Cla97C03G062720 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G062720
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	succinate dehydrogenase subunit 6, mitochondrial
Location	Cla97Chr03 : 24152352 .. 24155160 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAGGCACTGGGAAGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCCTTCATCCAGCGCCAGGCCCCTCTTCCTCCATGGTCTTCCTCCGATGTCGAGGAATTCATTGCTTCCGACCCCGTTCATGGCCCCGTTGTAATTTCATCCTTCTTTTACTGCCTGCTTCTGACTTCTCTTCTGTCACTCACTGTTTCATATAATCTCGTTTGTTTTCTTGATCGATGCATGGTGGGCTTCGTGGATTTTTCTGTTTCTTGAATCCCACATTTAAATTGGCCTTTGAGGGCGAACATTTCCAATTTGAGATTTATTCTTAGATTCGTATATCTGAAATTAAATGTGTTCATTTACATTTTTGTACGGAGATTAGGTAATAGAGTTGTTTCTCCATTGAGTTTTGGGATAATCTGAAATTTCCTAGCCCGATGATTGTTGATGAACAATGGCTTAAGTTATAATATTCTATGCCGTGTCTCGTCTCCCTCCCCTTGCCATGCGGTATTGCTATGAAATTACTTGAAGGAAATTATGAGTCAGGCCTTATACTTTTCAAGTTTTCTGGTGAATTCTTAGTAGGGAACTGTACCAAATATTTCCTTTTAGTATGGTTTTTATGATCAACAATTGATCATTCAATGCTCCCCATTTTAGAACTACTGAATAGTGGTTTCTTGAAATGCTTTTGAAATAATGTTTTCCTTTTTCTTTTCTTCCCATCATTCGTAATTTGAACATTATCATTCTGACAATCAAGTTAATACATTTTAATTTAACTCTTCTTTTCCTGGTTAGTATTATTTTGCTGTACGCCCTCATAATGTGTTTCACAGGGGTTGGAATCAATTTCTTTTTAATAAAGTTCCTATTAACTGTATTGGTATATGGTAGTTATCATTCTGATTACTTGGACCTTGTAGTGTAGGTAGCACTCCTGTTTGTTTGGTTTTTTGATAAGAAACAGGACGTATATCATGCACAAAACCCCCAAAAAAACAGCCTAAAGGTAAGGGGGAAGAGAGATCCCCCTCCCACAGAAGACCGAAAAAACAGCTATAAGAGAGCTTTCCTGTTCATTTGGATCATGGAAAGTGTAGCACACCTATTTGCCTGCGATTTTCCTTCCAAGACTTCTCTGCTTTTTTATTGTCTCTCTGGTCCTATTATGTTCTAGATTTGGTTGTTCGTGGCTGATTAGTTCTCTTTTCAATGCTCTCTTACGTTCAGTTATACAAAAAAAATTTCAGTTTATTTTCAGTTATTATCTAGAATATTATACTGCCTGTAATGCTAAATAGTTAGATCATGGAGATATTATATGTTCTCCCTTGCCTTCTTAAGTTCAACTACTTGGCCTGAGTGCATGTTCTATTCTTTTTCTGTTAAGTATATCCATATGCATTCTTCCGGATGAAATTTCAATAATTACTTAAGCAGCATATCACCTTAAAGACGGCCAGGTTAAGCATGGTTGTCATTTTGTTTCACATTTTTCCAACATAGCGGGAAGGCAAAGGCAGATACCTCAACTTTCTGTTATTATGGGTGATTTTGACATAATTTTAGATTCCTCGTTCATTAGCTGCTATTATTTCTTTTTCAGTTGAAGACTGCCAAAGAAGCTGTAAACTTTGGTCTTACAGGAAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTACATGGAAATACTCAAGAAGTCTACATGGTATTCAACTGCCTTGTCTTTCCACTTAACTGTTTCATATCAGTATATGAATACCGGTAGCATTCAAACTATTCTTTTACTTTACTCCTGACATTGTAGCAGTTGTTTCTTCTTTTAGAATTTAAGTACAAGATGGTTCAACGATCTCTGCAGTCTTATCTCTTCAATTCACATTCCTTTTCCTTCTTTTCATTTTTATGCAAGTCCAGTGTCTTTTTCAACCAATGGTGCGCATTTTTATTTTCATTGGCTAGAACCTTGGGTGGTAGTGTGGTACTATACTATACTTACAACTTGAATATGTCATGAGTTTGGTTGACATGAACATATATGATAGAACCCAAATATATTGAGATATAGGTAACCAAACTACAAGATAAATCATGTTATTCAAGGTACTTGGACCCTCTCCTCTTGAGATCACTCACAAGCCCTAAATCACTCACCAAATATTGCCTATTTTCTCCCTTCCCCTCCCCCTCTATTTATAACCAACTCCGTAGCTAATTACTAATATACCCTTTAATACTCTATTAACACTCTAATACCATTCCTATCATTATACTGGCTTAAAACGATTCCTGATTTATTTAATAGGGTGACATTTTGATTAGTCTCAAGTTGAAATGTGTAATGTCCTGTGGTAGAATACTGAGATCCTCAAGGCTCAAATTCTTGAGTTTCAATCCTAAAAGAGTTGAGGAGCTGGCTTTATTTGTGAAGACCTTCAGAATCTTTTTCTATGTTAAAGTCTGCGTCCAAGCAAACAAAAAGACATAACAAGCGTAAACTTAACTAGTTTGTTGAAATGTTGACTATGAGCATTGTGTTCTATGTATAAAGATGCATAAAATGCTTGTAAAATACTGGCATGCTTACCATGTAGCTGTGTTTTGACAGGCACTGGACTGTCATTCCTGGCGGGAGGTGTATTCGGTTGGACTTTCGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACATCATGGGTGCACAAGTTAAGTTTATGGAATGGTGGAGAAACAAGAATGAGGGACGTTTTTAA

mRNA sequence

ATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAGGCACTGGGAAGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCCTTCATCCAGCGCCAGGCCCCTCTTCCTCCATGGTCTTCCTCCGATGTCGAGGAATTCATTGCTTCCGACCCCGTTCATGGCCCCGTTTTGAAGACTGCCAAAGAAGCTGTAAACTTTGGTCTTACAGGAAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTACATGGAAATACTCAAGAAGTCTACATGGCACTGGACTGTCATTCCTGGCGGGAGGTGTATTCGGTTGGACTTTCGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACATCATGGGTGCACAAGTTAAGTTTATGGAATGGTGGAGAAACAAGAATGAGGGACGTTTTTAA

Coding sequence (CDS)

ATGGAAGATTCGTCCTCTCAATCCTTCTTCAGGAGGCACTGGGAAGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCCTTCATCCAGCGCCAGGCCCCTCTTCCTCCATGGTCTTCCTCCGATGTCGAGGAATTCATTGCTTCCGACCCCGTTCATGGCCCCGTTTTGAAGACTGCCAAAGAAGCTGTAAACTTTGGTCTTACAGGAAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTACATGGAAATACTCAAGAAGTCTACATGGCACTGGACTGTCATTCCTGGCGGGAGGTGTATTCGGTTGGACTTTCGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACATCATGGGTGCACAAGTTAAGTTTATGGAATGGTGGAGAAACAAGAATGAGGGACGTTTTTAA

Protein sequence

MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYRVDIMGAQVKFMEWWRNKNEGRF

Homology

[Close]

BLAST of Cla97C03G062720 vs. NCBI nr
Match: XP_022927277.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_023531100.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 8.9e-76
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWSERFSILDNYSPF+QR+ PLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           PVLKTA+EAVNFGLTGS+IGAVSTAGV WKYSRSLHG GLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNEGRF 148
           YQLYRVD MGAQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]

BLAST of Cla97C03G062720 vs. NCBI nr
Match: XP_022153276.1 (succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 131/147 (89.12%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWSERFSILDNY+P++QR+ PLP WSSSDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           P LKTA+EAVNFGLTGSVIGAVSTAGV WKYSRSLHG GLSFLAGGVFGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNEGRF 148
           YQLYR+D M AQVKFMEWWRNKNEGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]

BLAST of Cla97C03G062720 vs. NCBI nr
Match: XP_022988231.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 2.2e-74
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWSERFSILDNYSPF+QR  PLPPWSSSDVEEFIA +PVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDNPLPPWSSSDVEEFIAFNPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           P LKTA+EAVNFGLTG+VIGAVSTAGV WKYSRSLHG GLS L GGVFGWTFGHEIANHW
Sbjct: 61  PTLKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLVGGVFGWTFGHEIANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNEGRF 148
           YQLYRVD MGAQVKFMEWWRNKNEG F
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKNEGHF 147

[Close]

BLAST of Cla97C03G062720 vs. NCBI nr
Match: XP_011660175.1 (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 6.3e-74
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWS+RFSILDNYSP++QRQ PLP WSSSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           PVLKTA+EAVNFGLTGSVIGAVSTAGV WKYSRSLHG GLSFLAGGVFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNEG 146
           YQLYRVD M AQVKFMEWWRNK+EG
Sbjct: 121 YQLYRVDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Cla97C03G062720 vs. NCBI nr
Match: XP_022965868.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 8.3e-74
Identity = 131/144 (90.97%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWSERFSILDNYSPF+QR+ PLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           PVLKTA+EAVNFGLTGS+IGAVSTAGV WKYSRSLHG GLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNE 145
           YQLYRVD MGAQVKFMEWWRNK+E
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]

BLAST of Cla97C03G062720 vs. TrEMBL
Match: tr|A0A1S3BP04|A0A1S3BP04_CUCME (succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491959 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.4e-72
Identity = 129/145 (88.97%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MEDSSSQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFR+HWEGYKEFWSERFSILDNYSP++QR  PLP WSSSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHW 120
           PVLKTA+EAVNFGLTGSVIGAVSTAGV WKYS+SLHG GLSFLAGG FGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDIMGAQVKFMEWWRNKNEG 146
           YQLYR+D M AQVKFMEWWRNK+EG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Cla97C03G062720 vs. TrEMBL
Match: tr|A0A2I4H6S2|A0A2I4H6S2_9ROSI (succinate dehydrogenase subunit 6, mitochondrial OS=Juglans regia OX=51240 GN=LOC109013999 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.2e-66
Identity = 119/140 (85.00%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 7   QSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKTA 66
           QSFFRRHWEGYKEFW+ERFS LDNYS FI+R  PLP WSS DV+EFIASDPVHGP L+TA
Sbjct: 10  QSFFRRHWEGYKEFWAERFSFLDNYSRFIKRDKPLPSWSSFDVQEFIASDPVHGPTLQTA 69

Query: 67  KEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYRV 126
           +EAVNFGLTGSVIGAVSTAGVTWKYSRSLHG GLSFLAGGVFGWTFGHE+ANHW QLYR+
Sbjct: 70  REAVNFGLTGSVIGAVSTAGVTWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHWLQLYRL 129

Query: 127 DIMGAQVKFMEWWRNKNEGR 147
           D M AQVKFMEWW  K EGR
Sbjct: 130 DTMAAQVKFMEWWERKCEGR 149

[Close]

BLAST of Cla97C03G062720 vs. TrEMBL
Match: tr|A0A2C9V092|A0A2C9V092_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G103800 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.1e-65
Identity = 117/141 (82.98%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 6   SQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKT 65
           SQSFFR+HWEGYKEFW ERFS LDNYS FI+R  PLP WS+SDVEEFIASDPVHGP LKT
Sbjct: 5   SQSFFRKHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSASDVEEFIASDPVHGPTLKT 64

Query: 66  AKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           A+EA  FGLTGS+IGAVSTAGV WKYSRSLHG GLSFLAGGVFGWTFG EIANHW QLYR
Sbjct: 65  AREAAQFGLTGSIIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHWMQLYR 124

Query: 126 VDIMGAQVKFMEWWRNKNEGR 147
           +D M AQVKFMEWW NK +GR
Sbjct: 125 LDTMAAQVKFMEWWENKCDGR 145

[Close]

BLAST of Cla97C03G062720 vs. TrEMBL
Match: tr|A0A2N9FBI6|A0A2N9FBI6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16138 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.8e-64
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 6   SQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKT 65
           S+SFFR+HWEGYKEFW+ERFS L+NYS F+ R  PLP WS SDV+ FIASDPVHGP LKT
Sbjct: 14  SESFFRKHWEGYKEFWTERFSFLENYSRFVNRDKPLPSWSDSDVDHFIASDPVHGPTLKT 73

Query: 66  AKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           A+EAVNFGLTG+VIGAVSTAGV WKYSRSLHG GLSFLAGGVFGWTFGHEIANHW QLYR
Sbjct: 74  AREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWLQLYR 133

Query: 126 VDIMGAQVKFMEWWRNKNEGR 147
           +D M AQVKFMEWW  K+EG+
Sbjct: 134 LDTMAAQVKFMEWWEKKSEGQ 154

[Close]

BLAST of Cla97C03G062720 vs. TrEMBL
Match: tr|A0A251NQK0|A0A251NQK0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G148300 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.9e-64
Identity = 116/147 (78.91%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 1   MEDSSS-QSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVH 60
           M DSSS QSFF++HW+GYK+FW ERFS L NYS F++R  PLPPWS SDVE FIA DPVH
Sbjct: 1   MADSSSPQSFFKKHWDGYKDFWCERFSFLSNYSKFVKRDKPLPPWSESDVEAFIAFDPVH 60

Query: 61  GPVLKTAKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANH 120
           GP LKTA+EAVNFGLTGSVIGAVSTAGV+WKYSRSLHG GLSFLAGGVFGWTFGHEIANH
Sbjct: 61  GPALKTAREAVNFGLTGSVIGAVSTAGVSWKYSRSLHGAGLSFLAGGVFGWTFGHEIANH 120

Query: 121 WYQLYRVDIMGAQVKFMEWWRNKNEGR 147
           W QLYR+D + AQ KF+EWW +KNE R
Sbjct: 121 WLQLYRLDTLAAQTKFLEWWEDKNERR 147

[Close]

BLAST of Cla97C03G062720 vs. Swiss-Prot
Match: sp|Q941A6|SDH6_ARATH (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.9e-53
Identity = 94/139 (67.63%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 6   SQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKT 65
           S+SF  ++W G K+FWS+R S  +NY+ F +R APLP WSSSDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           A+EAV FG+TG+ +GAVSTA   WKYSRS HG  LSFL GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDIMGAQVKFMEWWRNKNE 145
           +D M AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Cla97C03G062720 vs. Swiss-Prot
Match: sp|Q6ZCC4|SDH6_ORYSJ (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.5e-30
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 13  HWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKTAKEAVNF 72
           H EG K  W++ FS LD +     R  PLP W+ +DV+EFIASDPV+GP LK  +E+  F
Sbjct: 6   HVEGIKAHWAKNFSFLDYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRKF 65

Query: 73  GLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYRVDIMGAQ 132
            L G+++G     G+  KYS++ HG  L+   G + G   G E+A HWYQLY+ D  GA 
Sbjct: 66  ALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGAN 125

Query: 133 VKFMEWWRNKNEG 146
           ++F+ WW +K  G
Sbjct: 126 LRFIYWWEDKVAG 138

[Close]

BLAST of Cla97C03G062720 vs. TAIR10
Match: AT1G08480.1 (unknown protein)

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-54
Identity = 94/139 (67.63%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 6   SQSFFRRHWEGYKEFWSERFSILDNYSPFIQRQAPLPPWSSSDVEEFIASDPVHGPVLKT 65
           S+SF  ++W G K+FWS+R S  +NY+ F +R APLP WSSSDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AKEAVNFGLTGSVIGAVSTAGVTWKYSRSLHGTGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           A+EAV FG+TG+ +GAVSTA   WKYSRS HG  LSFL GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDIMGAQVKFMEWWRNKNE 145
           +D M AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

The following BLAST results are available for this feature:

BLAST of Cla97C03G062720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927277.1	8.9e-76	91.16	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_0...	[more]
XP_022153276.1	1.3e-74	89.12	succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]	[more]
XP_022988231.1	2.2e-74	89.80	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]	[more]
XP_011660175.1	6.3e-74	91.03	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]	[more]
XP_022965868.1	8.3e-74	90.97	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Cla97C03G062720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BP04\|A0A1S3BP04_CUCME	1.4e-72	88.97	succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2I4H6S2\|A0A2I4H6S2_9ROSI	4.2e-66	85.00	succinate dehydrogenase subunit 6, mitochondrial OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A2C9V092\|A0A2C9V092_MANES	6.1e-65	82.98	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G103800 PE=4 SV=...	[more]
tr\|A0A2N9FBI6\|A0A2N9FBI6_FAGSY	1.8e-64	80.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16138 PE=4 SV=1	[more]
tr\|A0A251NQK0\|A0A251NQK0_PRUPE	3.9e-64	78.91	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G148300 PE=4 SV=1	[more]

BLAST of Cla97C03G062720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q941A6\|SDH6_ARATH	1.9e-53	67.63	Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q6ZCC4\|SDH6_ORYSJ	6.5e-30	44.36	Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Cla97C03G062720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08480.1	1.0e-54	67.63	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)

Vocabulary: **INTERPRO**
Term	Definition
IPR034574	SDH6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043495	protein anchor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G062720.1	Cla97C03G062720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034574	Succinate dehydrogenase subunit 6, mitochondrial	PANTHER	PTHR36708	FAMILY NOT NAMED	coord: 7..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G062720	Cla007336	Watermelon (97103) v1	wmwmbB127
Cla97C03G062720	Csa1G629750	Cucumber (Chinese Long) v2	cuwmbB042
Cla97C03G062720	MELO3C015091	Melon (DHL92) v3.5.1	mewmbB249
Cla97C03G062720	ClCG03G012390	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G062720	CSPI01G31260	Wild cucumber (PI 183967)	cpiwmbB043
Cla97C03G062720	gCucsa.355740.2	Cucumber (Gy14) v1	cgywmbB610
Cla97C03G062720	CmoCh10G009170	Cucurbita moschata (Rifu)	cmowmbB046
Cla97C03G062720	Lsi06G006030	Bottle gourd (USVL1VR-Ls)	lsiwmbB365
Cla97C03G062720	CsGy1G030430	Cucumber (Gy14) v2	cgybwmbB041
Cla97C03G062720	MELO3C015091.2	Melon (DHL92) v3.6.1	medwmbB235
Cla97C03G062720	Carg25975	Silver-seed gourd	carwmbB0928
Cla97C03G062720	Carg17847	Silver-seed gourd	carwmbB1019
Cla97C03G062720	CsaV3_1G043620	Cucumber (Chinese Long) v3	cucwmbB041
Cla97C03G062720	Bhi02G001226	Wax gourd	wgowmbB630

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G062720	Cucurbita maxima (Rimu)	cmawmbB060
Cla97C03G062720	Cucurbita maxima (Rimu)	cmawmbB115
Cla97C03G062720	Cucurbita moschata (Rifu)	cmowmbB100