Carg25975 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25975
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	succinate dehydrogenase subunit 6, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_311 : 39533 .. 42219 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGGAGCTTTCAAGAACGAGATTGCAGAGCTTGAAGAGAACAGCCATCGGCCATCGGGGGGTTCTTCTGCTTTCAATCGGATTAGTTTCTGTATTCTCAAATCGCCGCAACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTGTAAATCATCTTCCACTTTCCCTTTCTTTTACTTCCAGATTTATTAATTGTTCATTGGTGTATCTTAAATTAAATGCGGTCGTTCACTCTTTCTCCTTGATAAGGTAAAACAGCTGGAGGTCAATGGAAATGATTGTTTTTACTTTGAGTTTGGGATAATCTATAATTTCTTAGCCCAATGATTGTTGATGCAAAATGGTTATGATCTTGCATTCCTTGTCTCCCTACCCTTGTTGTGCAGTATTGATTTGAAGATTGTTATACTTTTCAATCTTCTGGTGCAGTGTATAGTGTGATTATTAGTAGGGAACTGGACCAAATATTTCCTTTTAACATGCTTTTCATGATCAGCAGTTTATCAGTAAGTGCTGCCCATTACAGGACTACTTAATTACTGTCTTTTGAAATCGTTTTGATCATAATAAGTGAAATAATACTTTGCCTTTTCTTTTCTTTCCCGTCATTGTAATTTGATTATTATCAGTACAATCAAATTGATTTGTTTCATTTAACCCTTTTTCTTGGTTTGTTTAGATTCATTGTTCTATCATGATATATTGCAATCTTGTTTCACCGGGGTTGGAATCAATTGCTTTTTAGTAAAGTATTTGTGAACTGTATTGGTAGATGGTTGTCATCATTCTGATTAATGGAACCTTTTAGCGCACCTATTTCCCTGGTTTTTGTTTGATTTTTATATGCAAAAGTAATTTCCTGTTTATTTTTTGGTTTCATCTGGACTAATATGTATGCCTATAATGCTCTCTAGTTAGATCATGGATTCATTATGTAATCTCCCTTGCCTTCTTAAGGTGAACTACTTGGTCTGGGTGCATGCTCTACGTCGTTTTTCGCTAGCGTATTCCTACACGTTCTTCCTTATGAAATTCCAATAATTACTTAGGCAGCATATCTACTGAGACTACCGGGTTAAGCATGGTTGACATTATGTTTTACATTTTACTTAGAGCTTTACTAGGAGCTCCTATACATGCCCTTTTGGATTCCTCGTTTACAAGCTGCTCGTTTTCTTTTTCAGTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTATTCAACCTTGTCTCTCCACTTATCTGCTTCATATTAATCAATGAATAGCAGTAGCATTCAAACTATCATTTATCTCTCATCAGTACTCATTTCTTAATTTCCATTTTCATGCAAGTCCAATATATTCCTCAACCAATTAAGAACATTTTATCATCAGCTAGAACCTTGAACGATACTTAATTATGTCCACAGCTTGATGAAGTCATGACTTTGATTGAGATGAATGAATACTGGCTTAAAATAATTCCTATTTTTTGTATTTATGAGGTGATATTTTAGAGTAGTTTAGGAGTCTCAAGTTGAAACGTGATGTCTTTTGGTAGAATAGTGAAGTCCTCAAGGTTCAAAGTCTTGAGAGTCCCATTTCTAAAAGAGTTGAGGAGCTGGGTTTATATGTCAAGACCTTGGGAATCATTTCTCTATGTTTAAATCTGCTTCAAAGCAAGCCACAAGACACAATAAGTGTATCTAGCGTGTTAAAATGTTGACCACGAGCGACGTGTAAAAGGGTCGTAAACATTTGGTTGCTTACCCTGTAGCTGTGTGTTTGACAGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAGGCTCTGATTTGCAGTTGAAGCAACAACACTCGCACTGCTGCTGCCATCTAAAATAAAAATGAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTTATGAGTTTAGAAAAGGACTATCCTTTTATTTTTATCTTCTGGAAATGACTGGTTCTAATTTGTAAGCTTGTTACAAATGTACTCATCTTTACCAATAACTACATCAATCCTGCCTTCTTTGTAATGCCTGGTGGACAACGTGAGCTTTACTGCTTGTTTTTCGGCCTTCTTTCTTGATCCAACTTCATGATCCTTCGAGATTTGTTTGTGCTTGACTTAGAATATCCTCCTTTTAAAGCTTTCTACGGGTGAAGAAAGGACGACTTTAGATTACCCAACGACTTTACTTGAACAAGATATGTTCCATACGATGTTCCCATCTAACTGTGCTCCCCGAGTTCTAAGGATCTCGAATGTGAAGATTATTAAAAGGCCTCAAATTTTATTATGAGTTTTATATGTTTATATGAAATATATAAATTAG

mRNA sequence

CAAAAGGAGCTTTCAAGAACGAGATTGCAGAGCTTGAAGAGAACAGCCATCGGCCATCGGGGGGTTCTTCTGCTTTCAATCGGATTAGTTTCTGTATTCTCAAATCGCCGCAACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAGGCTCTGATTTGCAGTTGAAGCAACAACACTCGCACTGCTGCTGCCATCTAAAATAAAAATGAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTTATGAGTTTAGAAAAGGACTATCCTTTTATTTTTATCTTCTGGAAATGACTGGTTCTAATTTGTAAGCTTGTTACAAATGTACTCATCTTTACCAATAACTACATCAATCCTGCCTTCTTTGTAATGCCTGGTGGACAACGTGAGCTTTACTGCTTGTTTTTCGGCCTTCTTTCTTGATCCAACTTCATGATCCTTCGAGATTTGTTTGTGCTTGACTTAGAATATCCTCCTTTTAAAGCTTTCTACGGGTGAAGAAAGGACGACTTTAGATTACCCAACGACTTTACTTGAACAAGATATGTTCCATACGATGTTCCCATCTAACTGTGCTCCCCGAGTTCTAAGGATCTCGAATGTGAAGATTATTAAAAGGCCTCAAATTTTATTATGAGTTTTATATGTTTATATGAAATATATAAATTAG

Coding sequence (CDS)

ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAG

Protein sequence

MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

Homology

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022927277.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_023531100.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.2 bits (796), Expect = 1.8e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKSEGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022965868.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 1.7e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSE 145
           YQLYRVDTMGAQVKFMEWWRNKSE
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022153276.1 (succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia])

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYR+DTM AQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_011660175.1 (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.6e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYRVDTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRVDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_008450314.1 (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGLSFLAGGAFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYR+DTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. TAIR10
Match: AT1G08480.1 (unknown protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-56
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GG FGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKSE 145
           +DTM AQVKFMEWW  KS+
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Carg25975 vs. Swiss-Prot
Match: sp|Q941A6|SDH6_ARATH (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GG FGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKSE 145
           +DTM AQVKFMEWW  KS+
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Carg25975 vs. Swiss-Prot
Match: sp|Q6ZCC4|SDH6_ORYSJ (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-32
Identity = 64/134 (47.76%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 12  KHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVN 71
           +H EG K  W++ FS LD +     R+KPLP W+D+DV+EFIASDPV+GP LK  RE+  
Sbjct: 5   EHVEGIKAHWAKNFSFLDYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRK 64

Query: 72  FGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYRVDTMGA 131
           F L G+L+G     G+A KYS++ HG  L+   G   G   G E+A HWYQLY+ D  GA
Sbjct: 65  FALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGA 124

Query: 132 QVKFMEWWRNKSEG 146
            ++F+ WW +K  G
Sbjct: 125 NLRFIYWWEDKVAG 138

[Close]

BLAST of Carg25975 vs. TrEMBL
Match: tr|A0A1S3BP04|A0A1S3BP04_CUCME (succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491959 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.9e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGLSFLAGGAFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYR+DTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. TrEMBL
Match: tr|A0A2N9FBI6|A0A2N9FBI6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16138 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.0e-68
Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           S+SFFRKHWEGYKEFW+ERFS L+NYS FV R+KPLPSWSDSDV+ FIASDPVHGP LKT
Sbjct: 14  SESFFRKHWEGYKEFWTERFSFLENYSRFVNRDKPLPSWSDSDVDHFIASDPVHGPTLKT 73

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHEIANHW QLYR
Sbjct: 74  AREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWLQLYR 133

Query: 126 VDTMGAQVKFMEWWRNKSEGR 147
           +DTM AQVKFMEWW  KSEG+
Sbjct: 134 LDTMAAQVKFMEWWEKKSEGQ 154

[Close]

BLAST of Carg25975 vs. TrEMBL
Match: tr|A0A2C9V092|A0A2C9V092_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G103800 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.0e-67
Identity = 122/141 (86.52%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           SQSFFRKHWEGYKEFW ERFS LDNYS F++R+KPLPSWS SDVEEFIASDPVHGP LKT
Sbjct: 5   SQSFFRKHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSASDVEEFIASDPVHGPTLKT 64

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREA  FGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFG EIANHW QLYR
Sbjct: 65  AREAAQFGLTGSIIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHWMQLYR 124

Query: 126 VDTMGAQVKFMEWWRNKSEGR 147
           +DTM AQVKFMEWW NK +GR
Sbjct: 125 LDTMAAQVKFMEWWENKCDGR 145

[Close]

BLAST of Carg25975 vs. TrEMBL
Match: tr|A0A2P4IYT2|A0A2P4IYT2_QUESU (Succinate dehydrogenase subunit 6, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_63325 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.8e-67
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           M +SSSQSFF+KH+EGYKEFW+ERFS L+NY+ FVQREKPLPSWSDSDVEEFIASDPV+G
Sbjct: 1   MGESSSQSFFKKHYEGYKEFWTERFSFLENYARFVQREKPLPSWSDSDVEEFIASDPVNG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
             LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRS+HGAGLSFLAGG FGWTFG E+ANHW
Sbjct: 61  FTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSVHGAGLSFLAGGVFGWTFGQEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGR 147
            QLYR+DTM AQVKFMEWW  KSEG+
Sbjct: 121 LQLYRLDTMAAQVKFMEWWEKKSEGQ 146

[Close]

BLAST of Carg25975 vs. TrEMBL
Match: tr|A0A2I4H6S2|A0A2I4H6S2_9ROSI (succinate dehydrogenase subunit 6, mitochondrial OS=Juglans regia OX=51240 GN=LOC109013999 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 8.5e-67
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 7   QSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTA 66
           QSFFR+HWEGYKEFW+ERFS LDNYS F++R+KPLPSWS  DV+EFIASDPVHGP L+TA
Sbjct: 10  QSFFRRHWEGYKEFWAERFSFLDNYSRFIKRDKPLPSWSSFDVQEFIASDPVHGPTLQTA 69

Query: 67  REAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYRV 126
           REAVNFGLTGS+IGAVSTAGV WKYSRSLHGAGLSFLAGG FGWTFGHE+ANHW QLYR+
Sbjct: 70  REAVNFGLTGSVIGAVSTAGVTWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHWLQLYRL 129

Query: 127 DTMGAQVKFMEWWRNKSEGR 147
           DTM AQVKFMEWW  K EGR
Sbjct: 130 DTMAAQVKFMEWWERKCEGR 149

The following BLAST results are available for this feature:

BLAST of Carg25975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927277.1	1.8e-81	100.00	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_0...	[more]
XP_022965868.1	1.7e-79	100.00	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]	[more]
XP_022153276.1	1.4e-76	92.52	succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]	[more]
XP_011660175.1	2.6e-75	93.79	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]	[more]
XP_008450314.1	4.4e-75	93.79	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]	[more]

BLAST of Carg25975 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08480.1	1.5e-56	70.50	unknown protein	[more]

BLAST of Carg25975 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q941A6\|SDH6_ARATH	2.6e-55	70.50	Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q6ZCC4\|SDH6_ORYSJ	1.4e-32	47.76	Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Carg25975 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BP04\|A0A1S3BP04_CUCME	2.9e-75	93.79	succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2N9FBI6\|A0A2N9FBI6_FAGSY	2.0e-68	86.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16138 PE=4 SV=1	[more]
tr\|A0A2C9V092\|A0A2C9V092_MANES	1.0e-67	86.52	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G103800 PE=4 SV=...	[more]
tr\|A0A2P4IYT2\|A0A2P4IYT2_QUESU	3.8e-67	84.25	Succinate dehydrogenase subunit 6, mitochondrial OS=Quercus suber OX=58331 GN=CF...	[more]
tr\|A0A2I4H6S2\|A0A2I4H6S2_9ROSI	8.5e-67	84.29	succinate dehydrogenase subunit 6, mitochondrial OS=Juglans regia OX=51240 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)

Vocabulary: **INTERPRO**
Term	Definition
IPR034574	SDH6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25975-RA	Carg25975-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034574	Succinate dehydrogenase subunit 6, mitochondrial	PANTHER	PTHR36708	FAMILY NOT NAMED	coord: 7..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25975	Cla007336	Watermelon (97103) v1	carwmB0892
Carg25975	Csa1G629750	Cucumber (Chinese Long) v2	carcuB0905
Carg25975	MELO3C015091	Melon (DHL92) v3.5.1	carmeB0876
Carg25975	ClCG03G012390	Watermelon (Charleston Gray)	carwcgB0864
Carg25975	CSPI01G31260	Wild cucumber (PI 183967)	carcpiB0925
Carg25975	gCucsa.355740.2	Cucumber (Gy14) v1	carcgyB1010
Carg25975	CmoCh10G009170	Cucurbita moschata (Rifu)	carcmoB1200
Carg25975	Lsi06G006030	Bottle gourd (USVL1VR-Ls)	carlsiB807
Carg25975	Cp4.1LG04g12560	Cucurbita pepo (Zucchini)	carcpeB1240
Carg25975	Cp4.1LG18g02000	Cucurbita pepo (Zucchini)	carcpeB1239
Carg25975	CsGy1G030430	Cucumber (Gy14) v2	carcgybB0878
Carg25975	MELO3C015091.2	Melon (DHL92) v3.6.1	carmedB0884
Carg25975	CsaV3_1G043620	Cucumber (Chinese Long) v3	carcucB0928
Carg25975	Cla97C03G062720	Watermelon (97103) v2	carwmbB0928
Carg25975	Bhi02G001226	Wax gourd	carwgoB1035

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25975	Carg17847	Silver-seed gourd	carcarB640

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25975	Cucurbita maxima (Rimu)	carcmaB1230
Carg25975	Cucurbita maxima (Rimu)	carcmaB1231
Carg25975	Cucurbita moschata (Rifu)	carcmoB1201