Csa1G169960 (gene) Cucumber (Chinese Long) v2

NameCsa1G169960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10545862 .. 10546098 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

mRNA sequence

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Coding sequence (CDS)

ATGCGGGGATTAGGGGCTGCATGGAAGGTGTTTGATGGAATGCACGATAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAAGTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGTTTATGAAACAACAATGA

Protein sequence

MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ*
BLAST of Csa1G169960 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

BLAST of Csa1G169960 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

BLAST of Csa1G169960 vs. Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

BLAST of Csa1G169960 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

BLAST of Csa1G169960 vs. Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1

Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

BLAST of Csa1G169960 vs. TrEMBL
Match: A0A0A0LVX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169960 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

BLAST of Csa1G169960 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

BLAST of Csa1G169960 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 3.4e+00
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1

Query: 4   LGAAWKVFDGMHDRNEVLRSVLI------GRLGQVEEEEKLIMEMEVEPDKGLWGAMLSA 63
           LG A KVFDGM +RNEV  S L+      G  G+V    + ++E   +PD+  + ++L+A
Sbjct: 160 LGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTA 219


HSP 2 Score: 74.7 bits (182), Expect = 5.6e-11
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           ++GR+GQVEE EKLI  MEV+PD+ LWGA+L+AC+IHGK +VA+RV +R
Sbjct: 256 MLGRVGQVEEAEKLIWRMEVKPDEALWGALLAACKIHGKVEVAERVAER 304

BLAST of Csa1G169960 vs. TrEMBL
Match: W9RYT7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014506 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-11
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           ++GR+G+VEE E+LI  ME+EPD+ LWGAMLSACRIHGK +VA+RV+ +   +Q
Sbjct: 255 MLGRVGRVEEAEELISGMEMEPDEALWGAMLSACRIHGKVEVAERVEGKLYGRQ 308

BLAST of Csa1G169960 vs. TrEMBL
Match: A0A0B2RTT8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-10
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           ++GR+GQVEE EKLI+ MEV+PD+ LWGA+L AC+ HGK +V +RV++R
Sbjct: 257 MLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERVEER 305

BLAST of Csa1G169960 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-08
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Sbjct: 642 LLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGE 685

BLAST of Csa1G169960 vs. TAIR10
Match: AT3G46790.1 (AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

BLAST of Csa1G169960 vs. TAIR10
Match: AT4G33990.1 (AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADV 67
           + GR GQ+E   K I  M ++PD  +WGA+LSACR+HG  D+
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638

BLAST of Csa1G169960 vs. TAIR10
Match: AT5G44230.1 (AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD 69
           L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Sbjct: 430 LLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

BLAST of Csa1G169960 vs. TAIR10
Match: AT4G01030.1 (AT4G01030.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1

Query: 8   WKVFDGMHDRNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACR 67
           WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 68  IHGKADVADRVQKR 74
           IH   ++A+   KR
Sbjct: 577 IHRDLELAEIAWKR 590

BLAST of Csa1G169960 vs. NCBI nr
Match: gi|700209876|gb|KGN64972.1| (hypothetical protein Csa_1G169960 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60
          MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI
Sbjct: 1  MRGLGAAWKVFDGMHDRNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRI 60

Query: 61 HGKADVADRVQKRFMKQQ 79
          HGKADVADRVQKRFMKQQ
Sbjct: 61 HGKADVADRVQKRFMKQQ 78

BLAST of Csa1G169960 vs. NCBI nr
Match: gi|659110920|ref|XP_008455480.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-18
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Sbjct: 255 LLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRVQKRFIKQQ 308

BLAST of Csa1G169960 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Sbjct: 255 LLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 308

BLAST of Csa1G169960 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 38.9 bits (89), Expect = 4.9e+00
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1

Query: 4   LGAAWKVFDGMHDRNEVLRSVLI------GRLGQVEEEEKLIMEMEVEPDKGLWGAMLSA 63
           LG A KVFDGM +RNEV  S L+      G  G+V    + ++E   +PD+  + ++L+A
Sbjct: 160 LGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTA 219


HSP 2 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ 79
           ++GR+G+VEE E+LI  ME+EPD+ LWGAMLSACRIHGK +VA+RV+ +   +Q
Sbjct: 255 MLGRVGRVEEAEELISGMEMEPDEALWGAMLSACRIHGKVEVAERVEGKLYGRQ 308

BLAST of Csa1G169960 vs. NCBI nr
Match: gi|593699138|ref|XP_007150034.1| (hypothetical protein PHAVU_005G120500g [Phaseolus vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 25  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR 74
           ++GR+GQVEE EKLI  MEV+PD+ LWGA+L+AC+IHGK +VA+RV +R
Sbjct: 256 MLGRVGQVEEAEKLIWRMEVKPDEALWGALLAACKIHGKVEVAERVAER 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PPR45_ARATH5.4e-0750.00Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP265_ARATH1.2e-0638.78Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
PP417_ARATH1.6e-0650.00Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN... [more]
PP348_ARATH1.6e-0650.00Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN... [more]
PP297_ARATH2.0e-0635.14Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0LVX2_CUCSA7.7e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169960 PE=4 SV=1[more]
A0A0A0K1F7_CUCSA3.6e-1885.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1[more]
A0A0A0K1F7_CUCSA3.4e+0040.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1[more]
W9RYT7_9ROSA5.6e-1161.11Uncharacterized protein OS=Morus notabilis GN=L484_014506 PE=4 SV=1[more]
A0A0B2RTT8_GLYSO2.1e-1061.22Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE... [more]
Match NameE-valueIdentityDescription
AT1G15510.13.0e-0850.00 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G46790.16.8e-0838.78 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G33990.18.8e-0850.00 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G44230.18.8e-0850.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G01030.11.2e-0735.14 pentatricopeptide (PPR) repeat-containing protein[more]
Match NameE-valueIdentityDescription
gi|700209876|gb|KGN64972.1|1.1e-36100.00hypothetical protein Csa_1G169960 [Cucumis sativus][more]
gi|659110920|ref|XP_008455480.1|4.0e-1885.19PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|449453543|ref|XP_004144516.1|5.2e-1885.19PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|449453543|ref|XP_004144516.1|4.9e+0040.00PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|593699138|ref|XP_007150034.1|8.0e-1165.31hypothetical protein PHAVU_005G120500g [Phaseolus vulgaris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008568 microtubule-severing ATPase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G169960.1Csa1G169960.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 25..75
score: 8.4
NoneNo IPR availablePANTHERPTHR24015:SF900SUBFAMILY NOT NAMEDcoord: 25..75
score: 8.4