Cp4.1LG00g01640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g01640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG00 : 3930039 .. 3930965 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Protein sequence

MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMKQH
Homology
[Close]
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.1e-58
Identity = 117/299 (39.13%), Postives = 177/299 (59.20%), Query Frame = 1 

Query: 11  YAALLQACSS---TKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LLG+CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.4e-55
Identity = 104/293 (35.49%), Postives = 166/293 (56.66%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALL ACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 7.9e-54
Identity = 103/296 (34.80%), Postives = 169/296 (57.09%), Query Frame = 1 

Query: 11  YAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + + P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMK 307
            MVD LGR G+++EA + +M+   +    +WG+LLGACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.0e-53
Identity = 108/299 (36.12%), Postives = 167/299 (55.85%), Query Frame = 1 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  ++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTDLPNL-NALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D   + NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +MK  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.9e-53
Identity = 110/283 (38.87%), Postives = 159/283 (56.18%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LL AC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 1.3e-156
Identity = 274/307 (89.25%), Postives = 287/307 (93.49%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHML+SGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+L ACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match: M5W7X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119
Identity = 207/301 (68.77%), Postives = 250/301 (83.06%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MP P+ +IPFYA LL+ACS +KN +T+KQ+HA TIRL IS HDFIRTKL  +YA+C  L 
Sbjct: 3   MPPPRGLIPFYANLLEACSLSKNLQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QA  +FSF  R+ TFLFN LIRAHSS  LFSQSLSIF  ML + K  DRHTLP VLKSC 
Sbjct: 63  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GL +LRLG+QVHGA+++NGF+ DL NLNALI+MY KCG+L  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVAARKVFDGMLIRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           ++AGYG+HG+FGEVF LF+RMVE G++PD +TFT +LTACSHGG  E+G+EYFGMM+  F
Sbjct: 183 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            ++P LEHYTCMVD+LGRVG+VEEAE+L++ M +EPD ALWGALLGACRIHGK EVA+RV
Sbjct: 243 GVKPRLEHYTCMVDMLGRVGRVEEAEELVLGMTVEPDAALWGALLGACRIHGKVEVAERV 302

Query: 301 Q 302
           +
Sbjct: 303 E 303

[Close]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match: I1M497_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2)

HSP 1 Score: 428.7 bits (1101), Expect = 5.9e-117
Identity = 202/303 (66.67%), Postives = 250/303 (82.51%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           M KP  ++PFYA LL ACSS+K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 1   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR ML++ KP DRHTLP VLKSC 
Sbjct: 61  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCA 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHGAV++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 121 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 181 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME++PDEALWGALLGAC+ HGK EV +RV
Sbjct: 241 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 300

Query: 301 QTR 304
           + R
Sbjct: 301 EER 303

[Close]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match: A0A0B2RTT8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.3e-116
Identity = 201/303 (66.34%), Postives = 250/303 (82.51%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           M KP  ++PFYA LL ACSS+K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 3   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR M+++ KP DRHTLP VLKSC 
Sbjct: 63  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMVLARKPFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHGAV++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 123 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 183 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME++PDEALWGALLGAC+ HGK EV +RV
Sbjct: 243 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 302

Query: 301 QTR 304
           + R
Sbjct: 303 EER 305

[Close]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match: V7BY86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.6e-114
Identity = 198/301 (65.78%), Postives = 248/301 (82.39%), Query Frame = 1 

Query: 3   KPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQA 62
           K  +++PFYA LL ACSS K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L +A
Sbjct: 4   KRGELVPFYATLLDACSSAKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEA 63

Query: 63  TTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGL 122
             +FSF  R+PTFLFN+LIRAHSSL LFSQSLSIFRHM+V+ KP DRHTLP VLKSC GL
Sbjct: 64  NILFSFTIRQPTFLFNSLIRAHSSLSLFSQSLSIFRHMIVAHKPFDRHTLPVVLKSCAGL 123

Query: 123 SSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALM 182
           S+L LG+QVHGAV++NGF+ DL N NAL+ MY KCG L  AR+VFD M +RNE+++S +M
Sbjct: 124 SALWLGQQVHGAVLVNGFALDLANSNALVNMYAKCGQLVSARQVFDRMCQRNEITFSTMM 183

Query: 183 AGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDL 242
            GYG+HG   EVF LF+++VE G++PD +TFT +L+ACSHGGLI++G+EYF MM++ F +
Sbjct: 184 MGYGMHGKCAEVFELFDKLVEAGERPDGVTFTTVLSACSHGGLIDKGREYFEMMEVRFGV 243

Query: 243 RPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQT 302
           +P ++HYTCMVD+LGRVGQVEEAEKLI  ME++PDEALWGALL AC+IHGK EVA+RV  
Sbjct: 244 KPEVQHYTCMVDMLGRVGQVEEAEKLIWRMEVKPDEALWGALLAACKIHGKVEVAERVAE 303

Query: 303 R 304
           R
Sbjct: 304 R 304

[Close]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match: AT3G46790.1 (AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-59
Identity = 117/299 (39.13%), Postives = 177/299 (59.20%), Query Frame = 1 

Query: 11  YAALLQACSS---TKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LLG+CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-56
Identity = 104/293 (35.49%), Postives = 166/293 (56.66%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALL ACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match: AT4G16470.1 (AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-55
Identity = 103/296 (34.80%), Postives = 169/296 (57.09%), Query Frame = 1 

Query: 11  YAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + + P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMK 307
            MVD LGR G+++EA + +M+   +    +WG+LLGACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match: AT4G19191.1 (AT4G19191.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-54
Identity = 108/299 (36.12%), Postives = 167/299 (55.85%), Query Frame = 1 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  ++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTDLPNL-NALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D   + NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +MK  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-54
Identity = 110/283 (38.87%), Postives = 159/283 (56.18%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LL AC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 1.9e-156
Identity = 274/307 (89.25%), Postives = 287/307 (93.49%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHML+SGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+L ACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: gi|659110920|ref|XP_008455480.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 541.2 bits (1393), Expect = 1.2e-150
Identity = 264/307 (85.99%), Postives = 283/307 (92.18%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL+ACSSTKN  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFRHML+SGK  DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME+EPDEALWGA+L ACRIHG+ +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: gi|657949665|ref|XP_008344341.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus domestica])

HSP 1 Score: 444.9 bits (1143), Expect = 1.2e-121
Identity = 214/301 (71.10%), Postives = 250/301 (83.06%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           +P P+ +I FYA LL ACSS+KN +TL Q+HA TI+LGIS HDFIRTKL S+YAA   L 
Sbjct: 3   VPPPRGLILFYATLLDACSSSKNLQTLTQLHAKTIKLGISRHDFIRTKLLSSYAAAAQLK 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           Q   +FSF TRRPTFLFN LIRAHSS  LFSQSLSIF  ML + KP DRHTLP VLKSC 
Sbjct: 63  QXNLLFSFCTRRPTFLFNTLIRAHSSQGLFSQSLSIFLRMLAANKPWDRHTLPAVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+Q+HGAV++NGF  DL N NALI+MY KCGDL  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLSALRLGKQMHGAVLVNGFGFDLANSNALISMYAKCGDLVGARKVFDGMLMRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG+FGEVF LF+RMVE G+ PD +TFT +LTACSHGGL E+G+EYF MM+  F
Sbjct: 183 IMAGYGMHGVFGEVFELFDRMVEAGEXPDGMTFTTILTACSHGGLTEKGREYFEMMEWRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            + PGLEHYTCMVDLLGRVG+VEEAE+L++ M +EPDEALWGALLGACRIHG+ EVA+RV
Sbjct: 243 GVMPGLEHYTCMVDLLGRVGRVEEAEELVLGMAVEPDEALWGALLGACRIHGQVEVAERV 302

Query: 301 Q 302
           +
Sbjct: 303 E 303

[Close]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: gi|1009109340|ref|XP_015889699.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 442.2 bits (1136), Expect = 7.5e-121
Identity = 211/303 (69.64%), Postives = 249/303 (82.18%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           +P  +++IPFYA L +AC STKN ++LKQIHA T+ LGI+ HDFIRTKL  +YA C  LP
Sbjct: 3   IPSLREVIPFYATLFEACISTKNLQSLKQIHAQTLTLGIARHDFIRTKLICSYACCGQLP 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QA  +FSFA R+PTFLFN  IR +SS +LFSQSLS FR ML+S KPID HTLP VLKSC 
Sbjct: 63  QANFLFSFAKRQPTFLFNTFIRVYSSHKLFSQSLSFFRQMLISHKPIDCHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAV ++GF +D+ N NALITMY KCG L  ARKVFDGMPERNE+SWSA
Sbjct: 123 GLSSLRLGRQVHGAVFVHGFGSDMANSNALITMYAKCGHLAGARKVFDGMPERNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG F EVF LFE+MV EGQ+PD +TFT +LTACSHGGL E G+ YF MM+  F
Sbjct: 183 MMAGYGMHGGFAEVFQLFEKMVSEGQRPDGVTFTTILTACSHGGLTEEGRLYFEMMERRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRP LEHYTCMVD+LGRVG+VEEAE+LI+ ME+EPDEALW ALLGAC+ HGK E+A+RV
Sbjct: 243 GLRPILEHYTCMVDMLGRVGRVEEAEELILGMELEPDEALWSALLGACKHHGKVEMAERV 302

Query: 301 QTR 304
           + +
Sbjct: 303 ENK 305

[Close]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: gi|1021561906|ref|XP_016172140.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arachis ipaensis])

HSP 1 Score: 439.9 bits (1130), Expect = 3.7e-120
Identity = 207/297 (69.70%), Postives = 249/297 (83.84%), Query Frame = 1 

Query: 7   IIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 66
           ++P  A LL AC S+KN + LK+IHA+TI LGIS HDFIRTKL S YA+C  L  A TIF
Sbjct: 9   LVPLCATLLDACISSKNLKNLKRIHAVTITLGISSHDFIRTKLVSCYASCAQLHHANTIF 68

Query: 67  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLR 126
           SFA R+PTFLFNALIRAHS+L  F+QSLS+FR M++S K  DRHT P VLKSC GLSSLR
Sbjct: 69  SFANRKPTFLFNALIRAHSNLNNFAQSLSLFRFMVLSYKQFDRHTFPSVLKSCAGLSSLR 128

Query: 127 LGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYG 186
           LG+QVHGAVV+NGFS DL NLNALI+MY KCGDL  ARKVFDGM ERN V W+ +MAGYG
Sbjct: 129 LGKQVHGAVVVNGFSFDLANLNALISMYAKCGDLACARKVFDGMLERNVVIWTTMMAGYG 188

Query: 187 VHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGL 246
           +HGMFGEVF +F+RMVE G++PD ++ TA+L+ACSHGG +E+G+EYF MM++ F ++PGL
Sbjct: 189 MHGMFGEVFEMFDRMVEAGERPDGVSLTAVLSACSHGGFVEKGREYFEMMEVKFGIKPGL 248

Query: 247 EHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTR 304
           +HYTCMVD+LGRVG+VEEAE+LI+ ME+EPDEALWGALLGACR HGK EVA+R+  R
Sbjct: 249 QHYTCMVDMLGRVGEVEEAERLILRMEVEPDEALWGALLGACRNHGKVEVAERIAER 305

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g01640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP265_ARATH3.1e-5839.13Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
PPR14_ARATH5.4e-5535.49Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
PP315_ARATH7.9e-5434.80Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN... [more]
PP323_ARATH3.0e-5336.12Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
PP181_ARATH3.9e-5338.87Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG00g01640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1F7_CUCSA1.3e-15689.25Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1[more]
M5W7X0_PRUPE1.7e-11968.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1[more]
I1M497_SOYBN5.9e-11766.67Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2[more]
A0A0B2RTT8_GLYSO1.3e-11666.34Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE... [more]
V7BY86_PHAVU1.6e-11465.78Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1[more]
BLAST of Cp4.1LG00g01640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46790.11.7e-5939.13 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06140.13.1e-5635.49 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G16470.14.4e-5534.80 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G19191.11.7e-5436.12 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G33680.12.2e-5438.87 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453543|ref|XP_004144516.1|1.9e-15689.25PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|659110920|ref|XP_008455480.1|1.2e-15085.99PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|657949665|ref|XP_008344341.1|1.2e-12171.10PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus... [more]
gi|1009109340|ref|XP_015889699.1|7.5e-12169.64PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|1021561906|ref|XP_016172140.1|3.7e-12069.70PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arach... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008568 microtubule-severing ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g01640.1Cp4.1LG00g01640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 76..104
score: 0.03coord: 248..273
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..221
score: 1.7
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 148..174
score: 0.001coord: 249..273
score: 2.0E-4coord: 176..210
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 277..308
score: 6.215coord: 245..275
score: 7.837coord: 174..208
score: 11.575coord: 73..107
score: 7.761coord: 143..173
score: 8.199coord: 209..239
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 6..303
score: 3.5E
NoneNo IPR availablePANTHERPTHR24015:SF862SUBFAMILY NOT NAMEDcoord: 6..303
score: 3.5E
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g01640CmaCh13G003410Cucurbita maxima (Rimu)cmacpeB209
Cp4.1LG00g01640CmoCh13G003640Cucurbita moschata (Rifu)cmocpeB180
Cp4.1LG00g01640Cla011036Watermelon (97103) v1cpewmB014
Cp4.1LG00g01640Csa1G169960Cucumber (Chinese Long) v2cpecuB003
Cp4.1LG00g01640ClCG01G011540Watermelon (Charleston Gray)cpewcgB006
Cp4.1LG00g01640CSPI01G15140Wild cucumber (PI 183967)cpecpiB002
Cp4.1LG00g01640Lsi02G011860Bottle gourd (USVL1VR-Ls)cpelsiB007
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g01640Cucumber (Gy14) v1cgycpeB0839
Cp4.1LG00g01640Bottle gourd (USVL1VR-Ls)cpelsiB010
Cp4.1LG00g01640Cucumber (Chinese Long) v3cpecucB0003