CmaCh13G003410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G003410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr13 : 3973282 .. 3974214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCACACACTTAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCGACCATCTGCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGTCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGTTTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGGAAGTGCGGGGACTTGGGTATTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGCAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCAATTTGAAGCCTGGGTTGGAACATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCACACACTTAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCGACCATCTGCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGTCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGTTTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGGAAGTGCGGGGACTTGGGTATTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGCAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCAATTTGAAGCCTGGGTTGGAACATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCACACACTTAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCGACCATCTGCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGTCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGTTTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGGAAGTGCGGGGACTTGGGTATTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGCAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCAATTTGAAGCCTGGGTTGGAACATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Protein sequence

MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMKQH

Homology

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BLAST of CmaCh13G003410 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-56
Identity = 116/301 (38.54%), Postives = 177/301 (58.80%), Query Frame = 1


Query: 11  YAALLQACSS---TKNHHTL-KQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG+++  G  + LP ++AL+TMYG+CG L + ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     +KP
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQT 306
            +EHY CMVDLLGR  +++EA K++   +M  EP   +WG+LL +CRIHG  E+A+R   
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMV--QDMRTEPGPKVWGSLLGSCRIHGNVELAERASR 479

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BLAST of CmaCh13G003410 vs. Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-54
Identity = 108/296 (36.49%), Postives = 166/296 (56.08%), Query Frame = 1


Query: 13  ALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFATRR 72
           +LL ACS  K+    K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
            + + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   MK  F LKP L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 309
           +D+LGR GQ+++A +++ E EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAE-EMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

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BLAST of CmaCh13G003410 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.1e-54
Identity = 105/295 (35.59%), Postives = 167/295 (56.61%), Query Frame = 1


Query: 14  LLQACSSTKNHHTLKQIHALTIRLG-ISHHDFIRTKLASTYAACDHLPQATTIFSFATRR 73
           L++AC +       K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G+++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFM 308
           VDLLGR G++ EA+  I    M ++P  + WGALLSACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFI--DNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

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BLAST of CmaCh13G003410 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-52
Identity = 111/285 (38.95%), Postives = 160/285 (56.14%), Query Frame = 1


Query: 14  LLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 FVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEV 299
           DLL R GQ++EA++ I      I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFI--ESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]

BLAST of CmaCh13G003410 vs. Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 4.3e-52
Identity = 103/298 (34.56%), Postives = 170/298 (57.05%), Query Frame = 1


Query: 11  YAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + ++P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 309
            MVD LGR G+++EA + +M+   +  P   +WG+LL ACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHP--PVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]

BLAST of CmaCh13G003410 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 1.9e-155
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           MPKP +IIPFYAALL ACSST N HTLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG ++INGFS DLP+LNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
           +L+PGL+HYTCMVDLLGR GQVEEAEKLI  MEMEIEPDEALWGA+LSACRIHGK +VAD
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLI--MEMEIEPDEALWGAMLSACRIHGKVDVAD 300

Query: 301 RVQTRFMKQ 310
           RVQ RF+KQ
Sbjct: 301 RVQKRFIKQ 307

[Close]

BLAST of CmaCh13G003410 vs. TrEMBL
Match: M5W7X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 3.0e-116
Identity = 206/303 (67.99%), Postives = 247/303 (81.52%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           MP P+ +IPFYA LL+ACS +KN  T+KQ+HA TIRL IS HDFIRTKL  +YA+C  L 
Sbjct: 3   MPPPRGLIPFYANLLEACSLSKNLQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           QA  +FSF  R+ TFLFN LIRAHSS  LFSQSLSIF  ML + K  DRHTLP VLKSC 
Sbjct: 63  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GL +LRLG+QVHG +++NGF+ DL NLNALI+MY KCG+L  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVAARKVFDGMLIRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           ++AGYG+HG+FGEVF LF+RMVE G++PD +TFT +LTACSHGG  E+G+EYFGMM+  F
Sbjct: 183 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 242

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
            +KP LEHYTCMVD+LGRVG+VEEAE+L+  + M +EPD ALWGALL ACRIHGK EVA+
Sbjct: 243 GVKPRLEHYTCMVDMLGRVGRVEEAEELV--LGMTVEPDAALWGALLGACRIHGKVEVAE 302

Query: 301 RVQ 304
           RV+
Sbjct: 303 RVE 303

[Close]

BLAST of CmaCh13G003410 vs. TrEMBL
Match: I1M497_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2)

HSP 1 Score: 419.1 bits (1076), Expect = 4.7e-114
Identity = 202/305 (66.23%), Postives = 247/305 (80.98%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           M KP  ++PFYA LL ACSS+K+   LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 1   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR MLL+ KP DRHTLP VLKSC 
Sbjct: 61  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCA 120

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHG V++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 121 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 181 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 240

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
            +KPGL HYTCMVD+LGRVGQVEEAEKLI  + ME++PDEALWGALL AC+ HGK EV +
Sbjct: 241 GVKPGLHHYTCMVDMLGRVGQVEEAEKLI--LRMEVKPDEALWGALLGACKTHGKLEVTE 300

Query: 301 RVQTR 306
           RV+ R
Sbjct: 301 RVEER 303

[Close]

BLAST of CmaCh13G003410 vs. TrEMBL
Match: A0A0B2RTT8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-113
Identity = 201/305 (65.90%), Postives = 247/305 (80.98%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           M KP  ++PFYA LL ACSS+K+   LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 3   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR M+L+ KP DRHTLP VLKSC 
Sbjct: 63  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMVLARKPFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHG V++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 123 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 183 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 242

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
            +KPGL HYTCMVD+LGRVGQVEEAEKLI  + ME++PDEALWGALL AC+ HGK EV +
Sbjct: 243 GVKPGLHHYTCMVDMLGRVGQVEEAEKLI--LRMEVKPDEALWGALLGACKTHGKLEVTE 302

Query: 301 RVQTR 306
           RV+ R
Sbjct: 303 RVEER 305

[Close]

BLAST of CmaCh13G003410 vs. TrEMBL
Match: V7BY86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 7.6e-112
Identity = 197/303 (65.02%), Postives = 247/303 (81.52%), Query Frame = 1


Query: 3   KPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQA 62
           K  +++PFYA LL ACSS K+   LK+IHALTI LGIS +DFIR+KL S+YA C  L +A
Sbjct: 4   KRGELVPFYATLLDACSSAKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEA 63

Query: 63  TTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGL 122
             +FSF  R+PTFLFN+LIRAHSSL LFSQSLSIFRHM+++ KP DRHTLP VLKSC GL
Sbjct: 64  NILFSFTIRQPTFLFNSLIRAHSSLSLFSQSLSIFRHMIVAHKPFDRHTLPVVLKSCAGL 123

Query: 123 SSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALM 182
           S+L LG+QVHG V++NGF+ DL N NAL+ MY KCG L  AR+VFD M +RNE+++S +M
Sbjct: 124 SALWLGQQVHGAVLVNGFALDLANSNALVNMYAKCGQLVSARQVFDRMCQRNEITFSTMM 183

Query: 183 AGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNL 242
            GYG+HG   EVF LF+++VE G++PD +TFT +L+ACSHGGLI++G+EYF MM++ F +
Sbjct: 184 MGYGMHGKCAEVFELFDKLVEAGERPDGVTFTTVLSACSHGGLIDKGREYFEMMEVRFGV 243

Query: 243 KPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRV 302
           KP ++HYTCMVD+LGRVGQVEEAEKLI    ME++PDEALWGALL+AC+IHGK EVA+RV
Sbjct: 244 KPEVQHYTCMVDMLGRVGQVEEAEKLI--WRMEVKPDEALWGALLAACKIHGKVEVAERV 303

Query: 303 QTR 306
             R
Sbjct: 304 AER 304

[Close]

BLAST of CmaCh13G003410 vs. TAIR10
Match: AT3G46790.1 (AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 221.5 bits (563), Expect = 7.3e-58
Identity = 116/301 (38.54%), Postives = 177/301 (58.80%), Query Frame = 1


Query: 11  YAALLQACSS---TKNHHTL-KQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG+++  G  + LP ++AL+TMYG+CG L + ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     +KP
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQT 306
            +EHY CMVDLLGR  +++EA K++   +M  EP   +WG+LL +CRIHG  E+A+R   
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMV--QDMRTEPGPKVWGSLLGSCRIHGNVELAERASR 479

[Close]

BLAST of CmaCh13G003410 vs. TAIR10
Match: AT1G18485.1 (AT1G18485.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-55
Identity = 108/296 (36.49%), Postives = 166/296 (56.08%), Query Frame = 1


Query: 13  ALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFATRR 72
           +LL ACS  K+    K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
            + + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   MK  F LKP L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 309
           +D+LGR GQ+++A +++ E EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAE-EMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]

BLAST of CmaCh13G003410 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 212.6 bits (540), Expect = 3.4e-55
Identity = 105/295 (35.59%), Postives = 167/295 (56.61%), Query Frame = 1


Query: 14  LLQACSSTKNHHTLKQIHALTIRLG-ISHHDFIRTKLASTYAACDHLPQATTIFSFATRR 73
           L++AC +       K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G+++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFM 308
           VDLLGR G++ EA+  I    M ++P  + WGALLSACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFI--DNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]

BLAST of CmaCh13G003410 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-53
Identity = 111/285 (38.95%), Postives = 160/285 (56.14%), Query Frame = 1


Query: 14  LLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 FVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEV 299
           DLL R GQ++EA++ I      I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFI--ESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]

BLAST of CmaCh13G003410 vs. TAIR10
Match: AT4G16470.1 (AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-53
Identity = 103/298 (34.56%), Postives = 170/298 (57.05%), Query Frame = 1


Query: 11  YAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + ++P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 309
            MVD LGR G+++EA + +M+   +  P   +WG+LL ACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHP--PVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]

BLAST of CmaCh13G003410 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 2.7e-155
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           MPKP +IIPFYAALL ACSST N HTLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG ++INGFS DLP+LNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
           +L+PGL+HYTCMVDLLGR GQVEEAEKLI  MEMEIEPDEALWGA+LSACRIHGK +VAD
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLI--MEMEIEPDEALWGAMLSACRIHGKVDVAD 300

Query: 301 RVQTRFMKQ 310
           RVQ RF+KQ
Sbjct: 301 RVQKRFIKQ 307

[Close]

BLAST of CmaCh13G003410 vs. NCBI nr
Match: gi|659110920|ref|XP_008455480.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 538.9 bits (1387), Expect = 5.9e-150
Identity = 265/309 (85.76%), Postives = 285/309 (92.23%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           MPKP +IIPFYAALL+ACSSTKN HTLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           QA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFRHMLLSGK  DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG ++INGFS DLP+LNALITMY KCGDLG+ARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
           +L+PGL+HYTCMVDLLGR+GQVEEAEKLIMEMEM  EPDEALWGA+LSACRIHG+ +VAD
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEM--EPDEALWGAMLSACRIHGRVDVAD 300

Query: 301 RVQTRFMKQ 310
           RVQ RF+KQ
Sbjct: 301 RVQKRFIKQ 307

[Close]

BLAST of CmaCh13G003410 vs. NCBI nr
Match: gi|657949665|ref|XP_008344341.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus domestica])

HSP 1 Score: 433.0 bits (1112), Expect = 4.6e-118
Identity = 212/303 (69.97%), Postives = 247/303 (81.52%), Query Frame = 1


Query: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60
           +P P+ +I FYA LL ACSS+KN  TL Q+HA TI+LGIS HDFIRTKL S+YAA   L 
Sbjct: 3   VPPPRGLILFYATLLDACSSSKNLQTLTQLHAKTIKLGISRHDFIRTKLLSSYAAAAQLK 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120
           Q   +FSF TRRPTFLFN LIRAHSS  LFSQSLSIF  ML + KP DRHTLP VLKSC 
Sbjct: 63  QXNLLFSFCTRRPTFLFNTLIRAHSSQGLFSQSLSIFLRMLAANKPWDRHTLPAVLKSCA 122

Query: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180
           GLS+LRLG+Q+HG V++NGF  DL N NALI+MY KCGDL  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLSALRLGKQMHGAVLVNGFGFDLANSNALISMYAKCGDLVGARKVFDGMLMRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           +MAGYG+HG+FGEVF LF+RMVE G+ PD +TFT +LTACSHGGL E+G+EYF MM+  F
Sbjct: 183 IMAGYGMHGVFGEVFELFDRMVEAGEXPDGMTFTTILTACSHGGLTEKGREYFEMMEWRF 242

Query: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300
            + PGLEHYTCMVDLLGRVG+VEEAE+L+  + M +EPDEALWGALL ACRIHG+ EVA+
Sbjct: 243 GVMPGLEHYTCMVDLLGRVGRVEEAEELV--LGMAVEPDEALWGALLGACRIHGQVEVAE 302

Query: 301 RVQ 304
           RV+
Sbjct: 303 RVE 303

[Close]

BLAST of CmaCh13G003410 vs. NCBI nr
Match: gi|1021561906|ref|XP_016172140.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arachis ipaensis])

HSP 1 Score: 430.3 bits (1105), Expect = 3.0e-117
Identity = 207/299 (69.23%), Postives = 246/299 (82.27%), Query Frame = 1


Query: 7   IIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIF 66
           ++P  A LL AC S+KN   LK+IHA+TI LGIS HDFIRTKL S YA+C  L  A TIF
Sbjct: 9   LVPLCATLLDACISSKNLKNLKRIHAVTITLGISSHDFIRTKLVSCYASCAQLHHANTIF 68

Query: 67  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLR 126
           SFA R+PTFLFNALIRAHS+L  F+QSLS+FR M+LS K  DRHT P VLKSC GLSSLR
Sbjct: 69  SFANRKPTFLFNALIRAHSNLNNFAQSLSLFRFMVLSYKQFDRHTFPSVLKSCAGLSSLR 128

Query: 127 LGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYG 186
           LG+QVHG VV+NGFS DL NLNALI+MY KCGDL  ARKVFDGM ERN V W+ +MAGYG
Sbjct: 129 LGKQVHGAVVVNGFSFDLANLNALISMYAKCGDLACARKVFDGMLERNVVIWTTMMAGYG 188

Query: 187 VHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGL 246
           +HGMFGEVF +F+RMVE G++PD ++ TA+L+ACSHGG +E+G+EYF MM++ F +KPGL
Sbjct: 189 MHGMFGEVFEMFDRMVEAGERPDGVSLTAVLSACSHGGFVEKGREYFEMMEVKFGIKPGL 248

Query: 247 EHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTR 306
           +HYTCMVD+LGRVG+VEEAE+LI  + ME+EPDEALWGALL ACR HGK EVA+R+  R
Sbjct: 249 QHYTCMVDMLGRVGEVEEAERLI--LRMEVEPDEALWGALLGACRNHGKVEVAERIAER 305

[Close]

BLAST of CmaCh13G003410 vs. NCBI nr
Match: gi|1012222582|ref|XP_015936153.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arachis duranensis])

HSP 1 Score: 429.9 bits (1104), Expect = 3.9e-117
Identity = 207/299 (69.23%), Postives = 246/299 (82.27%), Query Frame = 1


Query: 7   IIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLPQATTIF 66
           ++P  A LL AC S+KN   LK+IHA+TI LGIS HDFIRTKL S YA+C  L  A TIF
Sbjct: 9   LVPLCATLLDACISSKNLKNLKRIHAVTITLGISSHDFIRTKLVSCYASCAQLHHANTIF 68

Query: 67  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCTGLSSLR 126
           SFA R+PTFLFNALIRAHS+L  F+QSLS+FR M+LS K  DRHT P VLKSC GLSSLR
Sbjct: 69  SFANRKPTFLFNALIRAHSNLSNFAQSLSLFRFMVLSYKQFDRHTFPSVLKSCAGLSSLR 128

Query: 127 LGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSALMAGYG 186
           LG+QVHG VV+NGFS DL NLNALI+MY KCGDL  ARKVFDGM ERN V W+ +MAGYG
Sbjct: 129 LGKQVHGAVVVNGFSFDLANLNALISMYAKCGDLACARKVFDGMVERNVVIWTTMMAGYG 188

Query: 187 VHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFNLKPGL 246
           +HGMFGEVF +F+RMVE G++PD ++ TALL+ACSHGG +E+G+EYF MM++ F +KPGL
Sbjct: 189 MHGMFGEVFEMFDRMVEAGERPDGVSLTALLSACSHGGFVEKGREYFEMMEVKFGIKPGL 248

Query: 247 EHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVADRVQTR 306
           +HYTCMVD+LGRVG+VEEAE+LI  + M++EPDEALWGALL ACR HGK EVA+R+  R
Sbjct: 249 QHYTCMVDMLGRVGEVEEAERLI--LRMKVEPDEALWGALLGACRNHGKVEVAERIAER 305

The following BLAST results are available for this feature:

BLAST of CmaCh13G003410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP265_ARATH	1.3e-56	38.54	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
PPR48_ARATH	2.1e-54	36.49	Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN...	[more]
PPR14_ARATH	6.1e-54	35.59	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop...	[more]
PP181_ARATH	3.3e-52	38.95	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN...	[more]
PP315_ARATH	4.3e-52	34.56	Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh13G003410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1F7_CUCSA	1.9e-155	88.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1	[more]
M5W7X0_PRUPE	3.0e-116	67.99	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1	[more]
I1M497_SOYBN	4.7e-114	66.23	Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2	[more]
A0A0B2RTT8_GLYSO	1.1e-113	65.90	Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE...	[more]
V7BY86_PHAVU	7.6e-112	65.02	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1	[more]

BLAST of CmaCh13G003410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46790.1	7.3e-58	38.54	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G18485.1	1.2e-55	36.49	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G06140.1	3.4e-55	35.59	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G33680.1	1.9e-53	38.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G16470.1	2.4e-53	34.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmaCh13G003410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453543\|ref\|XP_004144516.1\|	2.7e-155	88.67	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
gi\|659110920\|ref\|XP_008455480.1\|	5.9e-150	85.76	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
gi\|657949665\|ref\|XP_008344341.1\|	4.6e-118	69.97	PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus...	[more]
gi\|1021561906\|ref\|XP_016172140.1\|	3.0e-117	69.23	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arach...	[more]
gi\|1012222582\|ref\|XP_015936153.1\|	3.9e-117	69.23	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Arach...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003410.1	CmaCh13G003410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 248..273 score: 7.7E-5coord: 76..104 score: 0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 174..221 score: 1.7
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 176..210 score: 2.7E-7coord: 249..273 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 73..107 score: 7.695coord: 245..275 score: 8.024coord: 279..310 score: 6.533coord: 209..244 score: 7.377coord: 143..173 score: 8.166coord: 174..208 score: 11
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 6..305 score: 1.8E
None	No IPR available	PANTHER	PTHR24015:SF862	SUBFAMILY NOT NAMED	coord: 6..305 score: 1.8E
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..18 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G003410	Cla011036	Watermelon (97103) v1	cmawmB202
CmaCh13G003410	Csa1G169960	Cucumber (Chinese Long) v2	cmacuB222
CmaCh13G003410	ClCG01G011540	Watermelon (Charleston Gray)	cmawcgB180
CmaCh13G003410	CSPI01G15140	Wild cucumber (PI 183967)	cmacpiB222
CmaCh13G003410	CmoCh13G003640	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G003410	Lsi02G011860	Bottle gourd (USVL1VR-Ls)	cmalsiB204
CmaCh13G003410	Cp4.1LG00g01640	Cucurbita pepo (Zucchini)	cmacpeB209
CmaCh13G003410	Cla97C01G011160	Watermelon (97103) v2	cmawmbB208
CmaCh13G003410	Carg28018	Silver-seed gourd	carcmaB0006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G003410	Cucumber (Gy14) v2	cgybcmaB068
CmaCh13G003410	Cucumber (Gy14) v2	cgybcmaB078
CmaCh13G003410	Cucumber (Chinese Long) v3	cmacucB0253
CmaCh13G003410	Wax gourd	cmawgoB0260
CmaCh13G003410	Cucurbita maxima (Rimu)	cmacmaB211
CmaCh13G003410	Cucumber (Gy14) v1	cgycmaB0883
CmaCh13G003410	Cucurbita moschata (Rifu)	cmacmoB220
CmaCh13G003410	Wild cucumber (PI 183967)	cmacpiB212
CmaCh13G003410	Cucumber (Chinese Long) v2	cmacuB210