CmoCh13G003640 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Pentatricopeptide repeat-containing protein) (3.4.24.-) (3.6.4.3)
LocationCmo_Chr13 : 4685903 .. 4686829 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAACCACAAGACATAATCCCCTTCTACGCTGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCGCATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGATGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGCAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGGCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCTGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCGCATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGATGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGCAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGGCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCTGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCGCATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGATGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGCAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGTTGAGTGCTTGTAGGATTCATGGGAAAGGCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA
Homology
[Close]
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.5e-57
Identity = 115/299 (38.46%), Postives = 176/299 (58.86%), Query Frame = 1 

Query: 11  YAALLQACSS---TKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRH--TLPPVIKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  V+++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-55
Identity = 106/292 (36.30%), Postives = 170/292 (58.22%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR+ML      ++ TL  ++ SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFD 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F+
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV 301
           VDLLGR G++ EA+  I  M ++P  + WGALLSACRIH +    GE+A+++
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKL 507

[Close]
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.5e-54
Identity = 112/283 (39.58%), Postives = 162/283 (57.24%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++RRM  +G   +  T+  V+K+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G  DE
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV 297
           DLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 3.9e-53
Identity = 106/295 (35.93%), Postives = 166/295 (56.27%), Query Frame = 1 

Query: 13  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 72
           +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR+M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFD 192
              + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK 307
           +D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.7e-53
Identity = 108/299 (36.12%), Postives = 168/299 (56.19%), Query Frame = 1 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  +I  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTDLPNL-NALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D   + NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]
BLAST of CmoCh13G003640 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 7.2e-155
Identity = 273/307 (88.93%), Postives = 286/307 (93.16%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFR MLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of CmoCh13G003640 vs. TrEMBL
Match: M5W7X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 7.0e-118
Identity = 205/301 (68.11%), Postives = 249/301 (82.72%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MP P+ +IPFYA LL+ACS +KN +T+KQ+HA TIRL IS HDFIRTKL  +YA+C  L 
Sbjct: 3   MPPPRGLIPFYANLLEACSLSKNLQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           QA  +FSF  R+ TFLFN LIRAHSS  LFSQSLSIF RML + K  DRHTLP V+KSC 
Sbjct: 63  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GL +LRLG+QVHGA+++NGF+ DL NLNALI+MY KCG+L  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVAARKVFDGMLIRNEISWSA 182

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           ++AGYG+HG+F EVF LF+RMVE G++PD +TFT +LTACSHGG  E+G+EYFGMM+  F
Sbjct: 183 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            ++P LEHYTCMVD+LGRVG+VEEAE+L++ M +EPD ALWGALL ACRIHGK EVA+RV
Sbjct: 243 GVKPRLEHYTCMVDMLGRVGRVEEAEELVLGMTVEPDAALWGALLGACRIHGKVEVAERV 302

Query: 301 Q 302
           +
Sbjct: 303 E 303

[Close]
BLAST of CmoCh13G003640 vs. TrEMBL
Match: I1M497_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2)

HSP 1 Score: 423.3 bits (1087), Expect = 2.5e-115
Identity = 200/303 (66.01%), Postives = 249/303 (82.18%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           M KP  ++PFYA LL ACSS+K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 1   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR+MLL+ KP DRHTLP V+KSC 
Sbjct: 61  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCA 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHGAV++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 121 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 180

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           +MAGYG+HG   EVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 181 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME++PDEALWGALL AC+ HGK EV +RV
Sbjct: 241 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 300

Query: 301 QTR 304
           + R
Sbjct: 301 EER 303

[Close]
BLAST of CmoCh13G003640 vs. TrEMBL
Match: A0A0B2RTT8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 5.6e-115
Identity = 199/303 (65.68%), Postives = 249/303 (82.18%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           M KP  ++PFYA LL ACSS+K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L 
Sbjct: 3   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           +A  +FSF  R+PTFLFN+LIRA+SSL LFSQSL IFR+M+L+ KP DRHTLP V+KSC 
Sbjct: 63  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMVLARKPFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+QVHGAV++NGF  DL N NALI MY KCG L  ARK+FD M +RNE+++S 
Sbjct: 123 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 182

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           +MAGYG+HG   EVF LF++MVE G++PD +TFTA+L+ACSHGG I++G+EY  MM++ F
Sbjct: 183 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME++PDEALWGALL AC+ HGK EV +RV
Sbjct: 243 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 302

Query: 301 QTR 304
           + R
Sbjct: 303 EER 305

[Close]
BLAST of CmoCh13G003640 vs. TrEMBL
Match: V7BY86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.5e-112
Identity = 195/301 (64.78%), Postives = 248/301 (82.39%), Query Frame = 1 

Query: 3   KPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQA 62
           K  +++PFYA LL ACSS K+ + LK+IHALTI LGIS +DFIR+KL S+YA C  L +A
Sbjct: 4   KRGELVPFYATLLDACSSAKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEA 63

Query: 63  TTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGL 122
             +FSF  R+PTFLFN+LIRAHSSL LFSQSLSIFR M+++ KP DRHTLP V+KSC GL
Sbjct: 64  NILFSFTIRQPTFLFNSLIRAHSSLSLFSQSLSIFRHMIVAHKPFDRHTLPVVLKSCAGL 123

Query: 123 SSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALM 182
           S+L LG+QVHGAV++NGF+ DL N NAL+ MY KCG L  AR+VFD M +RNE+++S +M
Sbjct: 124 SALWLGQQVHGAVLVNGFALDLANSNALVNMYAKCGQLVSARQVFDRMCQRNEITFSTMM 183

Query: 183 AGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDL 242
            GYG+HG   EVF LF+++VE G++PD +TFT +L+ACSHGGLI++G+EYF MM++ F +
Sbjct: 184 MGYGMHGKCAEVFELFDKLVEAGERPDGVTFTTVLSACSHGGLIDKGREYFEMMEVRFGV 243

Query: 243 RPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQT 302
           +P ++HYTCMVD+LGRVGQVEEAEKLI  ME++PDEALWGALL+AC+IHGK EVA+RV  
Sbjct: 244 KPEVQHYTCMVDMLGRVGQVEEAEKLIWRMEVKPDEALWGALLAACKIHGKVEVAERVAE 303

Query: 303 R 304
           R
Sbjct: 304 R 304

[Close]
BLAST of CmoCh13G003640 vs. TAIR10
Match: AT3G46790.1 (AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 223.0 bits (567), Expect = 2.5e-58
Identity = 115/299 (38.46%), Postives = 176/299 (58.86%), Query Frame = 1 

Query: 11  YAALLQACSS---TKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC +   T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRH--TLPPVIKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  V+++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of CmoCh13G003640 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-56
Identity = 106/292 (36.30%), Postives = 170/292 (58.22%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR+ML      ++ TL  ++ SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFD 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F+
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK----GEVADRV 301
           VDLLGR G++ EA+  I  M ++P  + WGALLSACRIH +    GE+A+++
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKL 507

[Close]
BLAST of CmoCh13G003640 vs. TAIR10
Match: AT2G33680.1 (AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-55
Identity = 112/283 (39.58%), Postives = 162/283 (57.24%), Query Frame = 1 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++RRM  +G   +  T+  V+K+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFDE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G  DE
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEV 297
           DLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of CmoCh13G003640 vs. TAIR10
Match: AT1G18485.1 (AT1G18485.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-54
Identity = 106/295 (35.93%), Postives = 166/295 (56.27%), Query Frame = 1 

Query: 13  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 72
           +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR+M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFD 192
              + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGFDLRPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKGEVADRVQTRFMK 307
           +D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of CmoCh13G003640 vs. TAIR10
Match: AT4G19191.1 (AT4G19191.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 208.8 bits (530), Expect = 4.9e-54
Identity = 108/299 (36.12%), Postives = 168/299 (56.19%), Query Frame = 1 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  +I  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTDLPNL-NALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D   + NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]
BLAST of CmoCh13G003640 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 554.7 bits (1428), Expect = 1.0e-154
Identity = 273/307 (88.93%), Postives = 286/307 (93.16%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFR MLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of CmoCh13G003640 vs. NCBI nr
Match: gi|659110920|ref|XP_008455480.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 535.4 bits (1378), Expect = 6.5e-149
Identity = 263/307 (85.67%), Postives = 282/307 (91.86%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL+ACSSTKN  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           QA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFR MLLSGK  DRHT P V+KSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           LMAGYGVHGMF EVF LFERMV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME+EPDEALWGA+LSACRIHG+ +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of CmoCh13G003640 vs. NCBI nr
Match: gi|657949665|ref|XP_008344341.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus domestica])

HSP 1 Score: 439.5 bits (1129), Expect = 4.8e-120
Identity = 212/301 (70.43%), Postives = 249/301 (82.72%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           +P P+ +I FYA LL ACSS+KN +TL Q+HA TI+LGIS HDFIRTKL S+YAA   L 
Sbjct: 3   VPPPRGLILFYATLLDACSSSKNLQTLTQLHAKTIKLGISRHDFIRTKLLSSYAAAAQLK 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           Q   +FSF TRRPTFLFN LIRAHSS  LFSQSLSIF RML + KP DRHTLP V+KSC 
Sbjct: 63  QXNLLFSFCTRRPTFLFNTLIRAHSSQGLFSQSLSIFLRMLAANKPWDRHTLPAVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS+LRLG+Q+HGAV++NGF  DL N NALI+MY KCGDL  ARKVFDGM  RNE+SWSA
Sbjct: 123 GLSALRLGKQMHGAVLVNGFGFDLANSNALISMYAKCGDLVGARKVFDGMLMRNEISWSA 182

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           +MAGYG+HG+F EVF LF+RMVE G+ PD +TFT +LTACSHGGL E+G+EYF MM+  F
Sbjct: 183 IMAGYGMHGVFGEVFELFDRMVEAGEXPDGMTFTTILTACSHGGLTEKGREYFEMMEWRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            + PGLEHYTCMVDLLGRVG+VEEAE+L++ M +EPDEALWGALL ACRIHG+ EVA+RV
Sbjct: 243 GVMPGLEHYTCMVDLLGRVGRVEEAEELVLGMAVEPDEALWGALLGACRIHGQVEVAERV 302

Query: 301 Q 302
           +
Sbjct: 303 E 303

[Close]
BLAST of CmoCh13G003640 vs. NCBI nr
Match: gi|694392093|ref|XP_009371538.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g16470-like [Pyrus x bretschneideri])

HSP 1 Score: 437.2 bits (1123), Expect = 2.4e-119
Identity = 209/301 (69.44%), Postives = 245/301 (81.40%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           +P P+ +IPFYA LL  CSS+KN R+L Q+HA TI+LGIS HDFIRTKL  +YAA   L 
Sbjct: 3   VPPPRGLIPFYATLLDGCSSSKNLRSLTQLHAKTIKLGISRHDFIRTKLLCSYAASSQLK 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           Q+  +FSF T RPTF+FN LIRAH S  LFSQSLSIF RML + KP DRHTLP V+KSC 
Sbjct: 63  QSNLLFSFCTSRPTFIFNTLIRAHCSQGLFSQSLSIFLRMLAANKPFDRHTLPAVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLS LRLG+QVHGAV++NGF  DL N NALI+MY KCGDL  A KVFDGM  RNE+SWSA
Sbjct: 123 GLSVLRLGKQVHGAVLVNGFGFDLANSNALISMYAKCGDLAGAHKVFDGMLMRNEISWSA 182

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           +MAGYG+HG+FDEVF LF+RMV  G++PD +TFT +LTACSHGGL E+GKEYF MM+  F
Sbjct: 183 IMAGYGMHGLFDEVFELFDRMVVAGERPDGVTFTTVLTACSHGGLTEKGKEYFEMMKQRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            + PGLEHYTCMVDLLGRVG+V+EAE+L++ M +EPDEALWGALL ACRIHGK EVA RV
Sbjct: 243 GVMPGLEHYTCMVDLLGRVGRVDEAEELVLGMAVEPDEALWGALLGACRIHGKVEVAGRV 302

Query: 301 Q 302
           +
Sbjct: 303 E 303

[Close]
BLAST of CmoCh13G003640 vs. NCBI nr
Match: gi|1009109340|ref|XP_015889699.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 437.2 bits (1123), Expect = 2.4e-119
Identity = 209/303 (68.98%), Postives = 249/303 (82.18%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           +P  +++IPFYA L +AC STKN ++LKQIHA T+ LGI+ HDFIRTKL  +YA C  LP
Sbjct: 3   IPSLREVIPFYATLFEACISTKNLQSLKQIHAQTLTLGIARHDFIRTKLICSYACCGQLP 62

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120
           QA  +FSFA R+PTFLFN  IR +SS +LFSQSLS FR+ML+S KPID HTLP V+KSC 
Sbjct: 63  QANFLFSFAKRQPTFLFNTFIRVYSSHKLFSQSLSFFRQMLISHKPIDCHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAV ++GF +D+ N NALITMY KCG L  ARKVFDGMPERNE+SWSA
Sbjct: 123 GLSSLRLGRQVHGAVFVHGFGSDMANSNALITMYAKCGHLAGARKVFDGMPERNEISWSA 182

Query: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240
           +MAGYG+HG F EVF LFE+MV EGQ+PD +TFT +LTACSHGGL E G+ YF MM+  F
Sbjct: 183 MMAGYGMHGGFAEVFQLFEKMVSEGQRPDGVTFTTILTACSHGGLTEEGRLYFEMMERRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300
            LRP LEHYTCMVD+LGRVG+VEEAE+LI+ ME+EPDEALW ALL AC+ HGK E+A+RV
Sbjct: 243 GLRPILEHYTCMVDMLGRVGRVEEAEELILGMELEPDEALWSALLGACKHHGKVEMAERV 302

Query: 301 QTR 304
           + +
Sbjct: 303 ENK 305

The following BLAST results are available for this feature:
BLAST of CmoCh13G003640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP265_ARATH4.5e-5738.46Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
PPR14_ARATH2.4e-5536.30Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
PP181_ARATH3.5e-5439.58Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN... [more]
PPR48_ARATH3.9e-5335.93Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN... [more]
PP323_ARATH8.7e-5336.12Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh13G003640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1F7_CUCSA7.2e-15588.93Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1[more]
M5W7X0_PRUPE7.0e-11868.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1[more]
I1M497_SOYBN2.5e-11566.01Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2[more]
A0A0B2RTT8_GLYSO5.6e-11565.68Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE... [more]
V7BY86_PHAVU1.5e-11264.78Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1[more]
BLAST of CmoCh13G003640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46790.12.5e-5838.46 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G06140.11.4e-5636.30 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33680.12.0e-5539.58 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G18485.12.2e-5435.93 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G19191.14.9e-5436.12 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CmoCh13G003640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453543|ref|XP_004144516.1|1.0e-15488.93PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|659110920|ref|XP_008455480.1|6.5e-14985.67PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|657949665|ref|XP_008344341.1|4.8e-12070.43PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus... [more]
gi|694392093|ref|XP_009371538.1|2.4e-11969.44PREDICTED: pentatricopeptide repeat-containing protein At4g16470-like [Pyrus x b... [more]
gi|1009109340|ref|XP_015889699.1|2.4e-11968.98PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008568 microtubule-severing ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003640.1CmoCh13G003640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 76..104
score: 0.0096coord: 248..273
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..221
score: 2.8
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 176..210
score: 3.9E-8coord: 148..174
score: 0.001coord: 249..273
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 245..275
score: 7.837coord: 209..244
score: 7.322coord: 174..208
score: 12.189coord: 277..308
score: 6.259coord: 73..107
score: 7.936coord: 143..173
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 6..303
score: 4.2E
NoneNo IPR availablePANTHERPTHR24015:SF862SUBFAMILY NOT NAMEDcoord: 6..303
score: 4.2E
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G003640CmaCh13G003410Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003640Cla011036Watermelon (97103) v1cmowmB189
CmoCh13G003640Csa1G169960Cucumber (Chinese Long) v2cmocuB206
CmoCh13G003640ClCG01G011540Watermelon (Charleston Gray)cmowcgB171
CmoCh13G003640CSPI01G15140Wild cucumber (PI 183967)cmocpiB208
CmoCh13G003640Lsi02G011860Bottle gourd (USVL1VR-Ls)cmolsiB194
CmoCh13G003640Cp4.1LG00g01640Cucurbita pepo (Zucchini)cmocpeB180
CmoCh13G003640Cla97C01G011160Watermelon (97103) v2cmowmbB192
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003640Cucumber (Gy14) v2cgybcmoB072
CmoCh13G003640Cucumber (Chinese Long) v3cmocucB0239
CmoCh13G003640Cucurbita moschata (Rifu)cmocmoB167
CmoCh13G003640Cucumber (Gy14) v1cgycmoB0880
CmoCh13G003640Cucurbita maxima (Rimu)cmacmoB395