Cla011036 (gene) Watermelon (97103) v1

Overview
NameCla011036
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat protein 65 (AHRD V1 ***- F5CAD8_FUNHY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr1 : 16747034 .. 16747960 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAACCACAAGACATAATCCCTTTCTACGCTGCTCTCCTGGAAGCATGCTCTTCCAAAAACAACCTCCACACCCTCGAGCAAATCCACGCTCTAACCATAAGACTCGGAATCTCTCACCACAATTTCATTCGAACCAAGCTCGCCTCCACCTACGCCGCCTGCGCCCAACTCCCACAAGCCCTCACCATCTTCTCCTTCGCCACTCGACGCCCTACCTACCTCTTCAATGCCCTCATCAGAGCGCACTCCTCTCTCCGTCTCTTCTCTCAATCCCTCTCCATTTTCCGCCACATGCTTCTCTCTGGCAAATCCATTGACCGTCATACTCTCCCGCCGGTGCTCAAGTCTTGTACCGGCCTCTCGTCCTTACGCCTCGGCCGCCAGGTTCATGGGGCTCTTGTGATTAATGGGTTCTCTGCAGATTTGCCGAATTTGAATGCTTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTAATGCACGGAAGGTGTTCGATGAAATGCCTGTGAGGAATGTGGTGTCATGGTCGGCGTTGATGGCGGGTTACGGTGTTCATGGGATGTTTGGGGAGGTGTTTGTGTTGTTTGAGAGGATGGTGGAAGAGGGGCAAAAGCCGGATGCGCTCACTTTTACAGCTCTTCTCACGGCGTGTAGCCATGGAGGGTTGCTTGACAGAGGGAAGGAGTATTTTGGTATGATGAGAATGGAGTTTGATTTGAGGCCTGGGTTGGAACATTATACATGTATGGTGGATTTGCTTGGGAGGGTGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATTAAGCCTGATGGGGCTTTGTGGGGAGCTCTGTTGAGTGCTTGTAGGATTCATGGGAAGACCGAGGTGGCTGAGAGGGTGCTAAAACGGTTTATCAACCAACAATGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCTTTCTACGCTGCTCTCCTGGAAGCATGCTCTTCCAAAAACAACCTCCACACCCTCGAGCAAATCCACGCTCTAACCATAAGACTCGGAATCTCTCACCACAATTTCATTCGAACCAAGCTCGCCTCCACCTACGCCGCCTGCGCCCAACTCCCACAAGCCCTCACCATCTTCTCCTTCGCCACTCGACGCCCTACCTACCTCTTCAATGCCCTCATCAGAGCGCACTCCTCTCTCCGTCTCTTCTCTCAATCCCTCTCCATTTTCCGCCACATGCTTCTCTCTGGCAAATCCATTGACCGTCATACTCTCCCGCCGGTGCTCAAGTCTTGTACCGGCCTCTCGTCCTTACGCCTCGGCCGCCAGGTTCATGGGGCTCTTGTGATTAATGGGTTCTCTGCAGATTTGCCGAATTTGAATGCTTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTAATGCACGGAAGGTGTTCGATGAAATGCCTGTGAGGAATGTGGTGTCATGGTCGGCGTTGATGGCGGGTTACGGTGTTCATGGGATGTTTGGGGAGGTGTTTGTGTTGTTTGAGAGGATGGTGGAAGAGGGGCAAAAGCCGGATGCGCTCACTTTTACAGCTCTTCTCACGGCGTGTAGCCATGGAGGGTTGCTTGACAGAGGGAAGGAGTATTTTGGTATGATGAGAATGGAGTTTGATTTGAGGCCTGGGTTGGAACATTATACATGTATGGTGGATTTGCTTGGGAGGGTGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATTAAGCCTGATGGGGCTTTGTGGGGAGCTCTGTTGAGTGCTTGTAGGATTCATGGGAAGACCGAGGTGGCTGAGAGGGTGCTAAAACGGTTTATCAACCAACAATGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCTTTCTACGCTGCTCTCCTGGAAGCATGCTCTTCCAAAAACAACCTCCACACCCTCGAGCAAATCCACGCTCTAACCATAAGACTCGGAATCTCTCACCACAATTTCATTCGAACCAAGCTCGCCTCCACCTACGCCGCCTGCGCCCAACTCCCACAAGCCCTCACCATCTTCTCCTTCGCCACTCGACGCCCTACCTACCTCTTCAATGCCCTCATCAGAGCGCACTCCTCTCTCCGTCTCTTCTCTCAATCCCTCTCCATTTTCCGCCACATGCTTCTCTCTGGCAAATCCATTGACCGTCATACTCTCCCGCCGGTGCTCAAGTCTTGTACCGGCCTCTCGTCCTTACGCCTCGGCCGCCAGGTTCATGGGGCTCTTGTGATTAATGGGTTCTCTGCAGATTTGCCGAATTTGAATGCTTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTAATGCACGGAAGGTGTTCGATGAAATGCCTGTGAGGAATGTGGTGTCATGGTCGGCGTTGATGGCGGGTTACGGTGTTCATGGGATGTTTGGGGAGGTGTTTGTGTTGTTTGAGAGGATGGTGGAAGAGGGGCAAAAGCCGGATGCGCTCACTTTTACAGCTCTTCTCACGGCGTGTAGCCATGGAGGGTTGCTTGACAGAGGGAAGGAGTATTTTGGTATGATGAGAATGGAGTTTGATTTGAGGCCTGGGTTGGAACATTATACATGTATGGTGGATTTGCTTGGGAGGGTGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATTAAGCCTGATGGGGCTTTGTGGGGAGCTCTGTTGAGTGCTTGTAGGATTCATGGGAAGACCGAGGTGGCTGAGAGGGTGCTAAAACGGTTTATCAACCAACAATGA

Protein sequence

MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLKRFINQQ
Homology
[Close]
BLAST of Cla011036 vs. Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.9e-55
Identity = 114/299 (38.13%), Postives = 175/299 (58.53%), Query Frame = 1 

Query: 11  YAALLEACSSK----NNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIF 70
           Y  +L+AC +     N+L   ++IHA   R G S H +I T L   YA    +  A  +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K  S +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L   ++VFD M  R+VVSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL++ GK  F  M  +  ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLKR 304
            +EHY CMVDLLGR  +++EA K++ +M  +P   +WG+LL +CRIHG  E+AER  +R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479


HSP 2 Score: 129.8 bits (325), Expect = 5.1e-29
Identity = 87/305 (28.52%), Postives = 148/305 (48.52%), Query Frame = 1 

Query: 11  YAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFAT 70
           Y  L+  C  +++L    ++H   +  G     F+ TKL   Y+    +  A  +F    
Sbjct: 80  YELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTR 139

Query: 71  RRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTG----LSSLR 130
           +R  Y++NAL RA +      + L ++  M   G   DR T   VLK+C      ++ L 
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLM 199

Query: 131 LGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYG 190
            G+++H  L   G+S+ +  +  L+ MY + G +  A  VF  MPVRNVVSWSA++A Y 
Sbjct: 200 KGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYA 259

Query: 191 VHGMFGEVFVLFERMVEE--GQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRP 250
            +G   E    F  M+ E     P+++T  ++L AC+    L++GK   G     + LR 
Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHG-----YILRR 319

Query: 251 GLEH----YTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 306
           GL+      + +V + GR G++E  +++   M  + D   W +L+S+  +HG  + A ++
Sbjct: 320 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDR-DVVSWNSLISSYGVHGYGKKAIQI 378

[Close]
BLAST of Cla011036 vs. Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.6e-54
Identity = 111/293 (37.88%), Postives = 166/293 (56.66%), Query Frame = 1 

Query: 14  LLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFATRRP 73
           L+  C+    L     +H   ++ G+     +     + Y  C  +     +F     + 
Sbjct: 162 LVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKG 221

Query: 74  TYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
              +NA+I  +S   L    L ++  M  SG   D  TL  VL SC  L + ++G +V  
Sbjct: 222 LITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK 281

Query: 134 ALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMFGE 193
            +  NGF  ++   NA I+MY +CG+L  AR VFD MPV+++VSW+A++  YG+HGM GE
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGM-GE 341

Query: 194 V-FVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTCM 253
           +  +LF+ M++ G +PD   F  +L+ACSH GL D+G E F  M+ E+ L PG EHY+C+
Sbjct: 342 IGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCL 401

Query: 254 VDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLKRFI 306
           VDLLGR G+++EA + I  M ++PDGA+WGALL AC+IH   ++AE    + I
Sbjct: 402 VDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI 453


HSP 2 Score: 137.1 bits (344), Expect = 3.2e-31
Identity = 82/285 (28.77%), Postives = 145/285 (50.88%), Query Frame = 1 

Query: 14  LLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSF--ATR 73
           +L++C+S +   + +Q+H    + G     F+ T L S Y  C  +  A  +F     + 
Sbjct: 59  ILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSS 118

Query: 74  RPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQV 133
           + +  +NALI  +++    + +  +FR M  +G S+D  T+  ++  CT    L LGR +
Sbjct: 119 QLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSL 178

Query: 134 HGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMF 193
           HG  V  G  +++  LN+ ITMY KCG +   R++FDEMPV+ +++W+A+++GY  +G+ 
Sbjct: 179 HGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLA 238

Query: 194 GEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTC 253
            +V  L+E+M   G  PD  T  ++L++C+H G    G E  G +       P +     
Sbjct: 239 YDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNA 298

Query: 254 MVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEV 297
            + +  R G + +A  +   M +K     W A++    +HG  E+
Sbjct: 299 SISMYARCGNLAKARAVFDIMPVK-SLVSWTAMIGCYGMHGMGEI 341


HSP 3 Score: 102.4 bits (254), Expect = 8.8e-21
Identity = 71/219 (32.42%), Postives = 112/219 (51.14%), Query Frame = 1 

Query: 77  FNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALV 136
           +N  +R  +   LFS+S+S++R ML SG S D  + P +LKSC  LS    G+Q+H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 137 INGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVS--WSALMAGYGVHGMFGEV 196
             G   +   L ALI+MY KCG + +ARKVF+E P  + +S  ++AL++GY  +    + 
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 197 FVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTCMVD 256
             +F RM E G   D++T   L+  C+    L  G+   G   ++  L   +      + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQC-VKGGLDSEVAVLNSFIT 200

Query: 257 LLGRVGQVEEAEKLIMEMEIKPDGAL-WGALLSACRIHG 293
           +  + G VE   +L  EM +K  G + W A++S    +G
Sbjct: 201 MYMKCGSVEAGRRLFDEMPVK--GLITWNAVISGYSQNG 236

[Close]
BLAST of Cla011036 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.1e-53
Identity = 104/296 (35.14%), Postives = 167/296 (56.42%), Query Frame = 1 

Query: 14  LLEACSSKNNLHTLEQIHALTIRLG-ISHHNFIRTKLASTYAACAQLPQALTIFSFATRR 73
           L++AC +       + +H ++IR   I   ++++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMFG 193
           G ++ NG   D  N  + I MY +CG++  AR VFD MP RNV+SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTCM 253
           E    F +M  +   P+++TF +LL+ACSH G +  G + F  M  ++ + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLKRFINQQ 309
           VDLLGR G++ EA+  I  M +KP  + WGALLSACRIH + ++A  + ++ ++ +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511


HSP 2 Score: 117.5 bits (293), Expect = 2.6e-25
Identity = 81/288 (28.12%), Postives = 138/288 (47.92%), Query Frame = 1 

Query: 15  LEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFATRRPT 74
           ++AC     L     IH L ++ G+   +++   L   YA    +  A  +F     R +
Sbjct: 116 IKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS 175

Query: 75  YLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGA 134
            L+  L++ +       +   +F  M  +G ++D  TL  ++K+C  + + ++G+ VHG 
Sbjct: 176 VLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGV 235

Query: 135 LVINGFSADLPNLNA-LITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMFGE 194
            +   F      L A +I MY KC  L NARK+F+    RNVV W+ L++G+       E
Sbjct: 236 SIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVE 295

Query: 195 VFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLE----HY 254
            F LF +M+ E   P+  T  A+L +CS  G L  GK   G M     +R G+E    ++
Sbjct: 296 AFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM-----IRNGIEMDAVNF 355

Query: 255 TCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVA 298
           T  +D+  R G ++ A + + +M  + +   W ++++A  I+G  E A
Sbjct: 356 TSFIDMYARCGNIQMA-RTVFDMMPERNVISWSSMINAFGINGLFEEA 397


HSP 3 Score: 104.8 bits (260), Expect = 1.8e-21
Identity = 80/280 (28.57%), Postives = 127/280 (45.36%), Query Frame = 1 

Query: 13  ALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFAT-- 72
           ALL   S    L+  +Q+HA  I  G      + + L + Y    +L  A + F+     
Sbjct: 9   ALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCW 68

Query: 73  RRPTYLFNALIRAHSSLRL--FSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLG 132
           +R  + +N ++  +S  +   +S  L ++  M      +D   L   +K+C GL  L  G
Sbjct: 69  KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 133 RQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVH 192
             +HG  + NG   D     +L+ MY + G + +A+KVFDE+PVRN V W  LM GY  +
Sbjct: 129 ILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188

Query: 193 GMFGEVFVLFERMVEEGQKPDALTFTALLTACSH--GGLLDRGKEYFGMMRMEFDLRPGL 252
               EVF LF  M + G   DALT   L+ AC +   G + +      + R   D    L
Sbjct: 189 SKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248

Query: 253 EHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLS 287
           +    ++D+  +   ++ A KL  E  +  +  +W  L+S
Sbjct: 249 Q--ASIIDMYVKCRLLDNARKL-FETSVDRNVVMWTTLIS 285

[Close]
BLAST of Cla011036 vs. Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-52
Identity = 101/288 (35.07%), Postives = 161/288 (55.90%), Query Frame = 1 

Query: 11  YAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFAT 70
           + ++L AC     ++  +QIHA  IR     H ++ + L   Y  C  L  A T+F    
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 71  RRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQ 130
           ++    + A++  +       +++ IF  M  SG   D +TL   + +C  +SSL  G Q
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392

Query: 131 VHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGM 190
            HG  + +G    +   N+L+T+YGKCGD+ ++ ++F+EM VR+ VSW+A+++ Y   G 
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452

Query: 191 FGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYT 250
             E   LF++MV+ G KPD +T T +++ACS  GL+++G+ YF +M  E+ + P + HY+
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAE 299
           CM+DL  R G++EEA + I  M   PD   W  LLSACR  G  E+ +
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK 560


HSP 2 Score: 124.4 bits (311), Expect = 2.2e-27
Identity = 74/243 (30.45%), Postives = 122/243 (50.21%), Query Frame = 1 

Query: 55  ACAQLPQALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPP 114
           AC  +  AL +F     + +  + A+I+  +   L  +++  FR M + G  +D++    
Sbjct: 217 ACGMIEDALQLFR-GMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGS 276

Query: 115 VLKSCTGLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRN 174
           VL +C GL ++  G+Q+H  ++   F   +   +ALI MY KC  L  A+ VFD M  +N
Sbjct: 277 VLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN 336

Query: 175 VVSWSALMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFG 234
           VVSW+A++ GYG  G   E   +F  M   G  PD  T    ++AC++   L+ G ++ G
Sbjct: 337 VVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHG 396

Query: 235 MMRMEFDLRPGLEHY----TCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRI 294
                  +  GL HY      +V L G+ G ++++ +L  EM ++ D   W A++SA   
Sbjct: 397 KA-----ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQ 452

[Close]
BLAST of Cla011036 vs. Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-52
Identity = 110/306 (35.95%), Postives = 167/306 (54.58%), Query Frame = 1 

Query: 5   QDIIPFYAALLEACSSKNNLHTLEQ---IHALTIRLGISHHNFIRTKLASTYAACAQLPQ 64
           ++  P  +  +   +S  N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  ++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGALVINGFSADLPNL-NALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 184
             SL  G+ +     I G   D   + NALI MY KCG +  AR +FD  P + VV+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G L++G EYF +M+  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 304
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  KPD  +WGALL+AC+IH   ++AE+ 
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQA 549

Query: 305 LKRFIN 307
            +   N
Sbjct: 550 AESLFN 555


HSP 2 Score: 122.1 bits (305), Expect = 1.1e-26
Identity = 78/295 (26.44%), Postives = 133/295 (45.08%), Query Frame = 1 

Query: 14  LLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQALTIFSFATR-- 73
           L+++ S + +L  LE +HA+ IRLG+     +     STY  C  L  A  +F    R  
Sbjct: 159 LIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGD 218

Query: 74  RPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQV 133
           R    +N++ +A+S       +  ++  ML      D  T   +  SC    +L  GR +
Sbjct: 219 RTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLI 278

Query: 134 HGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALMAGYGVHGMF 193
           H   +  G   D+  +N  I+MY K  D  +AR +FD M  R  VSW+ +++GY   G  
Sbjct: 279 HSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDM 338

Query: 194 GEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDLRPGLEHYTC 253
            E   LF  M++ G+KPD +T  +L++ C   G L+ GK       +    R  +     
Sbjct: 339 DEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNA 398

Query: 254 MVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLKRFIN 307
           ++D+  + G + EA   I +   +     W  +++   ++G    A ++  + I+
Sbjct: 399 LIDMYSKCGSIHEARD-IFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMID 452

[Close]
BLAST of Cla011036 vs. TrEMBL
Match: A0A0A0K1F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.2e-155
Identity = 275/308 (89.29%), Postives = 290/308 (94.16%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL+ACSS NNLHTL+QIHALTI L ISHH+FIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLSSLRLGRQVHGAL+INGFSADLP+LNALITMYGKCGDLG ARKVFD MP RN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPD LTFT+LLTACSHGGL+++GKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEI+PD ALWGA+LSACRIHGK +VA+RV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 LKRFINQQ 309
            KRFI QQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of Cla011036 vs. TrEMBL
Match: M5W7X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 3.0e-116
Identity = 204/300 (68.00%), Postives = 248/300 (82.67%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MP P+ +IPFYA LLEACS   NL T++Q+HA TIRL IS H+FIRTKL  +YA+CAQL 
Sbjct: 3   MPPPRGLIPFYANLLEACSLSKNLQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 62

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA  +FSF  R+ T+LFN LIRAHSS  LFSQSLSIF  ML + K+ DRHTLP VLKSC 
Sbjct: 63  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GL +LRLG+QVHGA+++NGF+ DL NLNALI+MY KCG+L  ARKVFD M +RN +SWSA
Sbjct: 123 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVAARKVFDGMLIRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           ++AGYG+HG+FGEVF LF+RMVE G++PDA+TFT +LTACSHGG  ++G+EYFGMM   F
Sbjct: 183 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            ++P LEHYTCMVD+LGRVG+VEEAE+L++ M ++PD ALWGALL ACRIHGK EVAERV
Sbjct: 243 GVKPRLEHYTCMVDMLGRVGRVEEAEELVLGMTVEPDAALWGALLGACRIHGKVEVAERV 302

[Close]
BLAST of Cla011036 vs. TrEMBL
Match: I1M497_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2)

HSP 1 Score: 414.8 bits (1065), Expect = 8.9e-113
Identity = 199/308 (64.61%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           M KP  ++PFYA LL+ACSS  +L  L++IHALTI LGIS ++FIR+KL S+YA CAQL 
Sbjct: 1   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 60

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           +A  +FSF  R+PT+LFN+LIRA+SSL LFSQSL IFR MLL+ K  DRHTLP VLKSC 
Sbjct: 61  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCA 120

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLS+LRLG+QVHGA+++NGF  DL N NALI MY KCG L  ARK+FD M  RN +++S 
Sbjct: 121 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 180

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG +D+G+EY  MM + F
Sbjct: 181 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME+KPD ALWGALL AC+ HGK EV ERV
Sbjct: 241 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 300

Query: 301 LKRFINQQ 309
            +R   ++
Sbjct: 301 EERVYGRE 308

[Close]
BLAST of Cla011036 vs. TrEMBL
Match: A0A0B2RTT8_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.0e-112
Identity = 198/308 (64.29%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           M KP  ++PFYA LL+ACSS  +L  L++IHALTI LGIS ++FIR+KL S+YA CAQL 
Sbjct: 3   MAKPHKLVPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLH 62

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           +A  +FSF  R+PT+LFN+LIRA+SSL LFSQSL IFR M+L+ K  DRHTLP VLKSC 
Sbjct: 63  EANILFSFTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMVLARKPFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLS+LRLG+QVHGA+++NGF  DL N NALI MY KCG L  ARK+FD M  RN +++S 
Sbjct: 123 GLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFST 182

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           +MAGYG+HG  GEVF LF++MVE G++PD +TFTA+L+ACSHGG +D+G+EY  MM + F
Sbjct: 183 MMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSHGGFIDKGREYLKMMEVRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            ++PGL HYTCMVD+LGRVGQVEEAEKLI+ ME+KPD ALWGALL AC+ HGK EV ERV
Sbjct: 243 GVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALWGALLGACKTHGKLEVTERV 302

Query: 301 LKRFINQQ 309
            +R   ++
Sbjct: 303 EERVYGRE 310

[Close]
BLAST of Cla011036 vs. TrEMBL
Match: V7BY86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.7e-111
Identity = 194/306 (63.40%), Postives = 250/306 (81.70%), Query Frame = 1 

Query: 3   KPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLPQA 62
           K  +++PFYA LL+ACSS  +L  L++IHALTI LGIS ++FIR+KL S+YA CAQL +A
Sbjct: 4   KRGELVPFYATLLDACSSAKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEA 63

Query: 63  LTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGL 122
             +FSF  R+PT+LFN+LIRAHSSL LFSQSLSIFRHM+++ K  DRHTLP VLKSC GL
Sbjct: 64  NILFSFTIRQPTFLFNSLIRAHSSLSLFSQSLSIFRHMIVAHKPFDRHTLPVVLKSCAGL 123

Query: 123 SSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSALM 182
           S+L LG+QVHGA+++NGF+ DL N NAL+ MY KCG L +AR+VFD M  RN +++S +M
Sbjct: 124 SALWLGQQVHGAVLVNGFALDLANSNALVNMYAKCGQLVSARQVFDRMCQRNEITFSTMM 183

Query: 183 AGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEFDL 242
            GYG+HG   EVF LF+++VE G++PD +TFT +L+ACSHGGL+D+G+EYF MM + F +
Sbjct: 184 MGYGMHGKCAEVFELFDKLVEAGERPDGVTFTTVLSACSHGGLIDKGREYFEMMEVRFGV 243

Query: 243 RPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERVLK 302
           +P ++HYTCMVD+LGRVGQVEEAEKLI  ME+KPD ALWGALL+AC+IHGK EVAERV +
Sbjct: 244 KPEVQHYTCMVDMLGRVGQVEEAEKLIWRMEVKPDEALWGALLAACKIHGKVEVAERVAE 303

Query: 303 RFINQQ 309
           R   ++
Sbjct: 304 RVYGRE 309

[Close]
BLAST of Cla011036 vs. NCBI nr
Match: gi|449453543|ref|XP_004144516.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 555.8 bits (1431), Expect = 4.6e-155
Identity = 275/308 (89.29%), Postives = 290/308 (94.16%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL+ACSS NNLHTL+QIHALTI L ISHH+FIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLSSLRLGRQVHGAL+INGFSADLP+LNALITMYGKCGDLG ARKVFD MP RN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPD LTFT+LLTACSHGGL+++GKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEI+PD ALWGA+LSACRIHGK +VA+RV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 LKRFINQQ 309
            KRFI QQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of Cla011036 vs. NCBI nr
Match: gi|659110920|ref|XP_008455480.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 536.2 bits (1380), Expect = 3.8e-149
Identity = 266/308 (86.36%), Postives = 285/308 (92.53%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALLEACSS  NLHTL+QIHALTI L ISHH+FIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLSSLRLGRQVHGAL+INGFSADLP+LNALITMY KCGDLG ARKVFD MP RN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMV+EGQ+PD LTFT+LLTACSHGGL+++GKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME++PD ALWGA+LSACRIHG+ +VA+RV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 LKRFINQQ 309
            KRFI QQ
Sbjct: 301 QKRFIKQQ 308

[Close]
BLAST of Cla011036 vs. NCBI nr
Match: gi|657949665|ref|XP_008344341.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus domestica])

HSP 1 Score: 427.2 bits (1097), Expect = 2.5e-116
Identity = 207/300 (69.00%), Postives = 245/300 (81.67%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           +P P+ +I FYA LL+ACSS  NL TL Q+HA TI+LGIS H+FIRTKL S+YAA AQL 
Sbjct: 3   VPPPRGLILFYATLLDACSSSKNLQTLTQLHAKTIKLGISRHDFIRTKLLSSYAAAAQLK 62

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           Q   +FSF TRRPT+LFN LIRAHSS  LFSQSLSIF  ML + K  DRHTLP VLKSC 
Sbjct: 63  QXNLLFSFCTRRPTFLFNTLIRAHSSQGLFSQSLSIFLRMLAANKPWDRHTLPAVLKSCA 122

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GLS+LRLG+Q+HGA+++NGF  DL N NALI+MY KCGDL  ARKVFD M +RN +SWSA
Sbjct: 123 GLSALRLGKQMHGAVLVNGFGFDLANSNALISMYAKCGDLVGARKVFDGMLMRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           +MAGYG+HG+FGEVF LF+RMVE G+ PD +TFT +LTACSHGGL ++G+EYF MM   F
Sbjct: 183 IMAGYGMHGVFGEVFELFDRMVEAGEXPDGMTFTTILTACSHGGLTEKGREYFEMMEWRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            + PGLEHYTCMVDLLGRVG+VEEAE+L++ M ++PD ALWGALL ACRIHG+ EVAERV
Sbjct: 243 GVMPGLEHYTCMVDLLGRVGRVEEAEELVLGMAVEPDEALWGALLGACRIHGQVEVAERV 302

[Close]
BLAST of Cla011036 vs. NCBI nr
Match: gi|645218343|ref|XP_008230141.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Prunus mume])

HSP 1 Score: 426.4 bits (1095), Expect = 4.2e-116
Identity = 203/300 (67.67%), Postives = 248/300 (82.67%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MP P+ +IPFYA LLEACS   N+ T++Q+HA TIRL IS H+FIRTKL  +YA+CAQL 
Sbjct: 16  MPPPRGLIPFYANLLEACSLSKNIQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 75

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA  +FSF  R+ T+LFN LIRAHSS  LFSQSLSIF  ML + K+ DRHTLP VLKSC 
Sbjct: 76  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 135

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GL +LRLG+QVHGA+++NGF+ DL NLNALI+MY KCG+L  ARKVFD M +RN +SWSA
Sbjct: 136 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVGARKVFDGMLIRNEISWSA 195

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           ++AGYG+HG+FGEVF LF+RMVE G++PDA+TFT +LTACSHGG  ++G+EYFGMM   F
Sbjct: 196 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 255

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            ++P LEHYTCMVD+LGRVG+VEEAE+L++ M ++PD ALWGALL ACRIHGK EVAERV
Sbjct: 256 GVKPRLEHYTCMVDMLGRVGRVEEAEELVLGMTVEPDAALWGALLGACRIHGKVEVAERV 315

[Close]
BLAST of Cla011036 vs. NCBI nr
Match: gi|595841451|ref|XP_007208212.1| (hypothetical protein PRUPE_ppa019520mg [Prunus persica])

HSP 1 Score: 426.4 bits (1095), Expect = 4.2e-116
Identity = 204/300 (68.00%), Postives = 248/300 (82.67%), Query Frame = 1 

Query: 1   MPKPQDIIPFYAALLEACSSKNNLHTLEQIHALTIRLGISHHNFIRTKLASTYAACAQLP 60
           MP P+ +IPFYA LLEACS   NL T++Q+HA TIRL IS H+FIRTKL  +YA+CAQL 
Sbjct: 3   MPPPRGLIPFYANLLEACSLSKNLQTVKQLHAKTIRLCISRHDFIRTKLVFSYASCAQLN 62

Query: 61  QALTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA  +FSF  R+ T+LFN LIRAHSS  LFSQSLSIF  ML + K+ DRHTLP VLKSC 
Sbjct: 63  QANLLFSFCNRQSTFLFNTLIRAHSSQGLFSQSLSIFIRMLAAIKAFDRHTLPVVLKSCA 122

Query: 121 GLSSLRLGRQVHGALVINGFSADLPNLNALITMYGKCGDLGNARKVFDEMPVRNVVSWSA 180
           GL +LRLG+QVHGA+++NGF+ DL NLNALI+MY KCG+L  ARKVFD M +RN +SWSA
Sbjct: 123 GLLALRLGKQVHGAILVNGFALDLANLNALISMYAKCGELVAARKVFDGMLIRNEISWSA 182

Query: 181 LMAGYGVHGMFGEVFVLFERMVEEGQKPDALTFTALLTACSHGGLLDRGKEYFGMMRMEF 240
           ++AGYG+HG+FGEVF LF+RMVE G++PDA+TFT +LTACSHGG  ++G+EYFGMM   F
Sbjct: 183 ILAGYGMHGVFGEVFELFDRMVEAGERPDAVTFTTILTACSHGGFTEKGREYFGMMEQRF 242

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIKPDGALWGALLSACRIHGKTEVAERV 300
            ++P LEHYTCMVD+LGRVG+VEEAE+L++ M ++PD ALWGALL ACRIHGK EVAERV
Sbjct: 243 GVKPRLEHYTCMVDMLGRVGRVEEAEELVLGMTVEPDAALWGALLGACRIHGKVEVAERV 302

The following BLAST results are available for this feature:
BLAST of Cla011036 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP265_ARATH1.9e-5538.13Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
PP223_ARATH4.6e-5437.88Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis th... [more]
PPR14_ARATH5.1e-5335.14Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
PP108_ARATH1.1e-5235.07Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th... [more]
PP323_ARATH1.5e-5235.95Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
BLAST of Cla011036 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1F7_CUCSA3.2e-15589.29Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041310 PE=4 SV=1[more]
M5W7X0_PRUPE3.0e-11668.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019520mg PE=4 SV=1[more]
I1M497_SOYBN8.9e-11364.61Uncharacterized protein OS=Glycine max GN=GLYMA_13G313300 PE=4 SV=2[more]
A0A0B2RTT8_GLYSO2.0e-11264.29Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_001226 PE... [more]
V7BY86_PHAVU1.7e-11163.40Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G120500g PE=4 SV=1[more]
BLAST of Cla011036 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453543|ref|XP_004144516.1|4.6e-15589.29PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|659110920|ref|XP_008455480.1|3.8e-14986.36PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|657949665|ref|XP_008344341.1|2.5e-11669.00PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Malus... [more]
gi|645218343|ref|XP_008230141.1|4.2e-11667.67PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
gi|595841451|ref|XP_007208212.1|4.2e-11668.00hypothetical protein PRUPE_ppa019520mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011036Cla011036.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 248..273
score: 9.3E-5coord: 76..104
score: 0.043coord: 281..304
score:
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..221
score: 2.1
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 148..175
score: 3.7E-4coord: 249..273
score: 2.6E-4coord: 176..210
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 143..173
score: 8.55coord: 174..208
score: 11.509coord: 209..244
score: 7.783coord: 245..275
score: 7.969coord: 277..308
score: 6.95coord: 73..107
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 6..303
score: 1.6E
NoneNo IPR availablePANTHERPTHR24015:SF862SUBFAMILY NOT NAMEDcoord: 6..303
score: 1.6E