Csa1G025860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TOR kinase binding protein
Location	Chr1 : 2894728 .. 2897162 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGTGAAAATTCTTCGACCGGTGAGCCACAAGGCTAAGTGAAGGAACAAGCGAGGGTAAACTTCAAAGAGAGAGAGTTTGAAGGAAGAGAAGCAGAGAAAATCGAGCCGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCGTAATATCATTTCTCTCCATCTTTTTCTTCCTTTAGTATGTCGTTTGATTTATTTTCCATCTTTTTCTTTCGTGATCCGTTCACGCCCATTCACAGAGTGTGCGTCAATCTGGGGTAAATTTGTTCTTTTTAGGGTTTCCAATTTTTTAGTCTGTTTTCGACTCTGGATTCCTTTATACTTGATTGTTAATTAGTGAAATTTTTGGTCTTAACTTCCTGCCTGATGATTTTGCAATTGGTCAATTTCTTTTCCTGTCATTCGTTTGTTCATATTTTTACTGTTGGTTACAATTAAATAACGGGTTGGAGAATACAAATTTTTGATCCATTTTTTTAACATTGGTTGGCACATACTTGTAGCATATCATCTGCATTTTTTTCTTCTTTTTTAAAAGGATAGATTTGAGTTTGCTTTTTGAGTTTACTGCTTAGATACTTGTTCCATTGATTAGCTGCCTCTACTTGCTAGAAGTTATCTATTTTAAATCTTTTATGTTGAGGATGACACATTTAAAAAATTCAGGGGACTTCAGGATGTTTTTTTTAGTTTTTGTTTTTTTGTGTCCACACACAAATTGTGTGACACAACAAAATTACAAAAAAAAAAGCACAACTAATATATAAATTTGGGTTAAGAGTATACTTACAAATGAGTTTAGAAGGCTGAAGGGGAGAATCAAGTAGAAGCAAAAAGAGTAACTAAACTCCAAAAAGAGCCATTATTAGCTTCTTGGTCACTAAAGATTCAGAGTTTCTTTGGAGGGTGAAGATCCTATTGGATCGAAGAGTTTTCACAATGTTTATATAATATCTAGGCTACTCTTCTTATTGCTAGTTGGTTTTGAAACCAACAATGTTAGCTAACATGCCCTTGCCAATTGTTTTGAAATGGAAGCCTACGATATCAAACTTTCTATCTTTGTAGGACTTCCATTACCCAAAGAAAATGGGCAAAGAAAGGGGAGACAGGAAAGCTGATCCTACATTCATGAGGGTGGATACGGAAAAAATCCTACTGTTTTTACATTGGTTGAGTTGAGATAAAATCAGTTTCTTCTCAATAGTTTGAATCAAGATAAGAAAGGACGGGTTTGAAGAAATATAAATGGTTTTTAACTTTTAAATTTTTTGGGTTAACTTGAGCTTAGCGTTGCTTGGTGTTAAGGAATCTACTCCTTGCTTTGAGGTTAGATGTGTGTGTCCTGACTCCACCCTCACTTTTATTGAACTAGAAAATGTGATTAACATTTTTTGTTGGGATATTTGGTGGTAATAAAATAAAAAGTAAGGAATTTCTGTGTGGATAGGGTAGTTCAAATCTGACGACTTTAGATTTCTTGCTAATCTTATGAGATGTTTTTTCTTGTGTTTTTGAAGAATCACGCATGATGATATTTGTTTTACTGTCTAATGGAAATAACGCTTCCATTGTTCATAGAAACCTTCATTGTTCGTAGAAACCTTCATTGGAGGAAATAGAACTTCTGTGTCCAGAGCATGTTTTGCATCTGGATCTGAGATGATATTCAACCTGTCTTCTACCTGTGTTCATCTGTTTTTCTTCTCATTCTGGTTTCTTTTTCATAAATATTTGCCTGTAGTCTTCGTTTGTTATTCCTCATTTATATTAGTTTTTCTTCCCATTATTAAGCTATCGATTGTCTATAATTTTCAAGGTGCAAGTGCACACTTTAACGAGCTTTCTTCTAAAAGTTAACTTGGTTTATAACATTATGATGACAGCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGAGCACCTCATCAGGGCACCGCAATCAGTTTTTTTTTTTTTTTTTAAGTAATAAAACCTTTCTCATCTATGTGAACACTCAACCCTTCCAATTTGGATTATGGGACAATATTGCATCTTTGAAGTTTTAGAAGTGAAGCTGTGCAAGTTTACACTTTATTTTATGACATTTTGTGAATGTTGAGTATTTTCAGTTTGAAGTTCTGCCTTTCAAATTTATCAATACAGACCATTGTTGGTTTTGTTTTTGTTTTTGTTCTTGTTCTTTTCCTTAACATGGGATGCTTGCTCCAGGAGATTTACATCTAAGTATCTAAGTCTCTCAACTTTACGCTATTCATATAATATATATATAGTGCCG

mRNA sequence

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGA

Protein sequence

MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQDEDAGRPYRKFF*

Homology

[Close]

BLAST of Csa1G025860 vs. TrEMBL
Match: A0A0A0LPS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025860 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860 vs. TrEMBL
Match: A0A0S3TCX4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G260300 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860 vs. TrEMBL
Match: A0A0L9VGT5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g001400 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860 vs. TrEMBL
Match: A0A0B2S4X0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000818 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLE NFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLEFNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860 vs. TrEMBL
Match: V7APR3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G060700g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIE+W TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860 vs. TAIR10
Match: AT2G31490.1 (AT2G31490.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-30
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGME +KNKFIEDW +ARENLE NFRWTRRN A++GIFGIA+P +VYKGIV++FHMQD
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRP+RKF
Sbjct: 61 EDAGRPHRKF 70

[Close]

BLAST of Csa1G025860 vs. NCBI nr
Match: gi|778656577|ref|XP_011649322.1| (PREDICTED: uncharacterized protein LOC101206025 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860 vs. NCBI nr
Match: gi|659107103|ref|XP_008453524.1| (PREDICTED: uncharacterized protein LOC103494207 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-33
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGM AHKNKFIEDWSTARENLE NFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMGAHKNKFIEDWSTARENLEYNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860 vs. NCBI nr
Match: gi|747092572|ref|XP_011094059.1| (PREDICTED: uncharacterized protein LOC105173858 [Sesamum indicum])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKN++IEDWS+ARENLELNFRWTRRNLA+VGIFG+AVP LVYKGIV+EFHMQD
Sbjct: 1  MGGGMEAHKNRWIEDWSSARENLELNFRWTRRNLALVGIFGVAVPILVYKGIVKEFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKF+
Sbjct: 61 EDAGRPYRKFW 71

[Close]

BLAST of Csa1G025860 vs. NCBI nr
Match: gi|920714034|gb|KOM54122.1| (hypothetical protein LR48_Vigan10g001400 [Vigna angularis])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860 vs. NCBI nr
Match: gi|593264852|ref|XP_007134604.1| (hypothetical protein PHAVU_010G060700g [Phaseolus vulgaris])

HSP 1 Score: 137.9 bits (346), Expect = 7.0e-30
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIE+W TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

The following BLAST results are available for this feature:

BLAST of Csa1G025860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPS8_CUCSA	1.9e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025860 PE=4 SV=1	[more]
A0A0S3TCX4_PHAAN	1.7e-30	91.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G260300 PE=...	[more]
A0A0L9VGT5_PHAAN	1.7e-30	91.43	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g001400 PE=4 SV=1	[more]
A0A0B2S4X0_GLYSO	4.9e-30	90.00	Uncharacterized protein OS=Glycine soja GN=glysoja_000818 PE=4 SV=1	[more]
V7APR3_PHAVU	4.9e-30	90.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G060700g PE=4 SV=1	[more]

BLAST of Csa1G025860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31490.1	2.0e-30	80.00	unknown protein	[more]

BLAST of Csa1G025860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656577\|ref\|XP_011649322.1\|	2.8e-34	100.00	PREDICTED: uncharacterized protein LOC101206025 [Cucumis sativus]	[more]
gi\|659107103\|ref\|XP_008453524.1\|	6.8e-33	97.18	PREDICTED: uncharacterized protein LOC103494207 [Cucumis melo]	[more]
gi\|747092572\|ref\|XP_011094059.1\|	1.1e-30	88.73	PREDICTED: uncharacterized protein LOC105173858 [Sesamum indicum]	[more]
gi\|920714034\|gb\|KOM54122.1\|	2.4e-30	91.43	hypothetical protein LR48_Vigan10g001400 [Vigna angularis]	[more]
gi\|593264852\|ref\|XP_007134604.1\|	7.0e-30	90.00	hypothetical protein PHAVU_010G060700g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009853	photorespiration
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086928	cucumber EST collection version 3.0	transcribed_cluster
CU103215	cucumber EST collection version 3.0	transcribed_cluster
CU107758	cucumber EST collection version 3.0	transcribed_cluster
CU132596	cucumber EST collection version 3.0	transcribed_cluster
CU134509	cucumber EST collection version 3.0	transcribed_cluster
CU168181	cucumber EST collection version 3.0	transcribed_cluster
CU168742	cucumber EST collection version 3.0	transcribed_cluster
CU172357	cucumber EST collection version 3.0	transcribed_cluster
CU174187	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G025860.1	Csa1G025860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107758	CU107758	transcribed_cluster
CU168181	CU168181	transcribed_cluster
CU168742	CU168742	transcribed_cluster
CU132596	CU132596	transcribed_cluster
CU172357	CU172357	transcribed_cluster
CU103215	CU103215	transcribed_cluster
CU086928	CU086928	transcribed_cluster
CU174187	CU174187	transcribed_cluster
CU134509	CU134509	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479	FAMILY NOT NAMED	coord: 2..71 score: 5.1
None	No IPR available	PANTHER	PTHR35479:SF1	SUBFAMILY NOT NAMED	coord: 2..71 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G025860	MELO3C017388	Melon (DHL92) v3.5.1	cumeB055
Csa1G025860	ClCG06G014030	Watermelon (Charleston Gray)	cuwcgB082
Csa1G025860	Lsi06G012440	Bottle gourd (USVL1VR-Ls)	culsiB071
Csa1G025860	MELO3C017388.2	Melon (DHL92) v3.6.1	cumedB047
Csa1G025860	Cla97C06G123480	Watermelon (97103) v2	cuwmbB079
Csa1G025860	CSPI01G04640	Wild cucumber (PI 183967)	cpicuB000
Csa1G025860	Cucsa.111820	Cucumber (Gy14) v1	cgycuB137
Csa1G025860	CmaCh11G003310	Cucurbita maxima (Rimu)	cmacuB087
Csa1G025860	CmoCh11G003360	Cucurbita moschata (Rifu)	cmocuB076
Csa1G025860	Cp4.1LG18g06640	Cucurbita pepo (Zucchini)	cpecuB363
Csa1G025860	Cp4.1LG04g13420	Cucurbita pepo (Zucchini)	cpecuB654
Csa1G025860	CsGy1G004530	Cucumber (Gy14) v2	cgybcuB001
Csa1G025860	Carg09081	Silver-seed gourd	carcuB0622
Csa1G025860	Carg15198	Silver-seed gourd	carcuB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None