CmaCh11G003310 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G003310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre T-cell antigen receptor alpha
Location	Cma_Chr11 : 1652189 .. 1654250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAAATTAATAACTTAATGTTACTGCATACTATATATATGTTTTCGGTTCGAAGAGGTGGTGAAAATTTGTCGACTGGCAAAGCGAAGGAAGAGAGAGCAGGGAAGAAATTTGAACAGAGCAACAATGGGCGGAGGAATGGAAGCTCAGAAGAACAGATTTATCGAGGATTGGGGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGTAACTTTGCTCTTGTGGGTATCTTCGGCATCGCCATCCCCCTCCTCGTTTACAAGGGGATCGTCAGGGAATTCGTAAGATCGTTTCTTTCTTTTCTCTTTTATGTTCCTTTTTCTTGCTTTGGTATGTGGTTCAATTTATTTTTTGATACCTTTTTGATCTGTTGACGCCCACCTACATCATTGTTCTTTCCTAGGGTTTCCATTTCTTCCGATTTTGCGACTTAGGATTTCCTTTCAGCTTGGTTGTTTAAAAGTCAATAAGTGAATTCATGATTTTCCGATTGTCTATTTCCTTTGATGTCATTCCTTTGTTCATAGAGTTCGAAATTTCATGTTCCCTTTGTTCTAGGTTTCAATCCTGACTCCATCCCCACATTTGATGTACTAAAACAATGTTGTTCATATATTTTTTTGTTGAGATGTGTAGAGGAAATACAACAAAAATTAAGATTTTACTGTTATCATCTATTTTTAATCACAGTGCGTCAGATTTCTTGGGGATCTTACAATATGGTTCTTTTTGTGTTCTTGGAGGATCACGATCACGCAGGATGATATTTGCTTTACTGTTTAGCGGGAAAAAATTGCTTCTATAACATGTTTTGCTTCGGAGATATTTGGCAGCAATACTGTTTTGTGAATGTTGGTGGTCTTAACTCCTGTCTTGTAACTGTGTTCATCTATGGTTTTTCCAATCTTCGCTTATTTTCCTTCAAAATGTGCATATAGTTCTTGTTTTGCGTTCTTCATTTATGTAAGTTTTCGTTCTCATTATTGAAGTGCTGATTGTCTGTAATTTTCAAGTCGCCGCACACTCTTTTTCGATCTTTCTTCTAATACATAACTTGGTCTCTAACATTATGATGACAGCATATGCAAGATGAGGATGCCGGCAGACCTTACAGGAAGTTCTTTTGAGCACCGTACTTGGGACTGCAATAATAATTCCTTGGAGTAATCAAACCTTTCTTATCTATGTGAGAACACTGAACCCCACCAATTTGGATTCTGGGACAATATTTCAGCTTTATGCTATGCAATTACACTGTATTTCATGTCATTTTGTGAACGCTGAGTGTTTTTTGTTGAAGATCATGCCTTCCAAATATGTTATGCATTTTTCCTTGTCTTCGTCGATTTTCTGAACACGGGGTGCTTGGATTATCATGTGGCTCAGGAATGCCAGAGTTTCATTGTGATAATTGGTTATATATTTACATAAGATGGCTGGTGGTAAATTGTTGGTTATTTCTTCTGTTTAGGAAATAGGGTGTTGGCCTTTCTTTGCTAAATCTTGTGTAAAGTCCAAGCCCATACGGGTAGATAATGTCCTATTTGGGATTTTCCCTTTCAAACTTCCCCATGGAGTTTTTAAAATAGGTTTCCCCATCTTTATAAAAAATGTTTCGTTCCCCTTTTCCAACCGATGTGGGATCTCAAAAATTTAAATGCTTCGAGGTCTAACGTCCTTCCTTGTTGACACTCGTTTCTTCCTTTTCCAATCAATGTGGGATCTCACATCTTACCGCCTCACAGAGTAGTGATTAGAGATGAGGATGTTGTTTGGTGGTTCCCTAAATATGCTTCTTTCTCCTCAGAAAATTGGAGATGTCGTCAAGGTGGAGGCTCCAATCTGAATTGGAAATGTTATGGCAAATTCTAGTCCTACTTTTGTTAGTCATAGATCACTAGTCGAGTTATGTTTGGTTTTGATTGTATTAAGGTTGAATCATATACACTTCCATTTTGTTTAGTACAAGTCATTTTATCCGTTCAATCCATGGGAGAAATTTAGATTTCTTGTTATTTTAAACGTTTTTAAGAGTAGATTTGACTAG

mRNA sequence

AAATTAAATTAATAACTTAATGTTACTGCATACTATATATATGTTTTCGGTTCGAAGAGGTGGTGAAAATTTGTCGACTGGCAAAGCGAAGGAAGAGAGAGCAGGGAAGAAATTTGAACAGAGCAACAATGGGCGGAGGAATGGAAGCTCAGAAGAACAGATTTATCGAGGATTGGGGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGTAACTTTGCTCTTGTGGGTATCTTCGGCATCGCCATCCCCCTCCTCGTTTACAAGGGGATCGTCAGGGAATTCCATATGCAAGATGAGGATGCCGGCAGACCTTACAGGAAATTTGACTAG

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCAGAAGAACAGATTTATCGAGGATTGGGGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGTAACTTTGCTCTTGTGGGTATCTTCGGCATCGCCATCCCCCTCCTCGTTTACAAGGGGATCGTCAGGGAATTCCATATGCAAGATGAGGATGCCGGCAGACCTTACAGGAAATTTGACTAG

Protein sequence

MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQDEDAGRPYRKFD

Homology

[Close]

BLAST of CmaCh11G003310 vs. TrEMBL
Match: A0A0K9RHR8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071180 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.0e-33
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIEDWGSARENLEHNFRWTRRNFAL+GIFGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEASKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. TrEMBL
Match: A0A0D2MNV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G145600 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.0e-33
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. TrEMBL
Match: A0A061GEQ2_THECC (Pre T-cell antigen receptor alpha OS=Theobroma cacao GN=TCM_029947 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-32
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KNRFIEDW SARENLEHNFRWTRRNFALVG+FGIAIP+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. TrEMBL
Match: M5Y579_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014388mg PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-32
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIE+WGSARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIVR+FHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGSARENLEHNFRWTRRNFALVGIFGIAIPILVYKGIVRDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. TrEMBL
Match: A0A059CK03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-32
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIEDWGSARE LEHNFRWTRRNFALVGIFG+AIPLLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. TAIR10
Match: AT2G31490.1 (AT2G31490.1 unknown protein)

HSP 1 Score: 141.0 bits (354), Expect = 2.9e-34
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGME  KN+FIEDWGSARENLEHNFRWTRRNFAL+GIFGIA+P++VYKGIV++FHMQD
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRP+RKF
Sbjct: 61 EDAGRPHRKF 70

[Close]

BLAST of CmaCh11G003310 vs. NCBI nr
Match: gi|902219737|gb|KNA18397.1| (hypothetical protein SOVF_071180 [Spinacia oleracea])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIEDWGSARENLEHNFRWTRRNFAL+GIFGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEASKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. NCBI nr
Match: gi|823143610|ref|XP_012471613.1| (PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. NCBI nr
Match: gi|590624878|ref|XP_007025728.1| (Pre T-cell antigen receptor alpha [Theobroma cacao])

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-32
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KNRFIEDW SARENLEHNFRWTRRNFALVG+FGIAIP+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. NCBI nr
Match: gi|596287755|ref|XP_007225826.1| (hypothetical protein PRUPE_ppa014388mg [Prunus persica])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-32
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIE+WGSARENLEHNFRWTRRNFALVGIFGIAIP+LVYKGIVR+FHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGSARENLEHNFRWTRRNFALVGIFGIAIPILVYKGIVRDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]

BLAST of CmaCh11G003310 vs. NCBI nr
Match: gi|470127631|ref|XP_004299771.1| (PREDICTED: uncharacterized protein LOC101307696 [Fragaria vesca subsp. vesca])

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-32
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREFHMQD 60
          MGGGMEA KNRF+E+WG+ARENLEHNFRWTRRNFA++GIFGIAIP+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFVEEWGAARENLEHNFRWTRRNFAIIGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

The following BLAST results are available for this feature:

BLAST of CmaCh11G003310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G003310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0K9RHR8_SPIOL	8.0e-33	92.86	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071180 PE=4 SV=1	[more]
A0A0D2MNV8_GOSRA	8.0e-33	95.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G145600 PE=4 SV=1	[more]
A0A061GEQ2_THECC	1.4e-32	94.29	Pre T-cell antigen receptor alpha OS=Theobroma cacao GN=TCM_029947 PE=4 SV=1	[more]
M5Y579_PRUPE	1.8e-32	92.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014388mg PE=4 SV=1	[more]
A0A059CK03_EUCGR	5.2e-32	92.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02622 PE=4 SV=1	[more]

BLAST of CmaCh11G003310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31490.1	2.9e-34	85.71	unknown protein	[more]

BLAST of CmaCh11G003310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|902219737\|gb\|KNA18397.1\|	1.1e-32	92.86	hypothetical protein SOVF_071180 [Spinacia oleracea]	[more]
gi\|823143610\|ref\|XP_012471613.1\|	1.1e-32	95.71	PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii]	[more]
gi\|590624878\|ref\|XP_007025728.1\|	2.0e-32	94.29	Pre T-cell antigen receptor alpha [Theobroma cacao]	[more]
gi\|596287755\|ref\|XP_007225826.1\|	2.5e-32	92.86	hypothetical protein PRUPE_ppa014388mg [Prunus persica]	[more]
gi\|470127631\|ref\|XP_004299771.1\|	4.3e-32	90.00	PREDICTED: uncharacterized protein LOC101307696 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003310.1	CmaCh11G003310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479	FAMILY NOT NAMED	coord: 2..70 score: 1.5
None	No IPR available	PANTHER	PTHR35479:SF1	SUBFAMILY NOT NAMED	coord: 2..70 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G003310	Cucsa.111820	Cucumber (Gy14) v1	cgycmaB0259
CmaCh11G003310	Csa1G025860	Cucumber (Chinese Long) v2	cmacuB087
CmaCh11G003310	MELO3C017388	Melon (DHL92) v3.5.1	cmameB120
CmaCh11G003310	ClCG06G014030	Watermelon (Charleston Gray)	cmawcgB135
CmaCh11G003310	CSPI01G04640	Wild cucumber (PI 183967)	cmacpiB086
CmaCh11G003310	Lsi06G012440	Bottle gourd (USVL1VR-Ls)	cmalsiB143
CmaCh11G003310	Cp4.1LG04g13420	Cucurbita pepo (Zucchini)	cmacpeB153
CmaCh11G003310	Cp4.1LG18g06640	Cucurbita pepo (Zucchini)	cmacpeB132
CmaCh11G003310	MELO3C017388.2	Melon (DHL92) v3.6.1	cmamedB128
CmaCh11G003310	CsaV3_1G004610	Cucumber (Chinese Long) v3	cmacucB0101
CmaCh11G003310	Cla97C06G123480	Watermelon (97103) v2	cmawmbB139
CmaCh11G003310	CsGy1G004530	Cucumber (Gy14) v2	cgybcmaB029
CmaCh11G003310	Carg09081	Silver-seed gourd	carcmaB0830
CmaCh11G003310	Carg15198	Silver-seed gourd	carcmaB1092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G003310	Wax gourd	cmawgoB0152
CmaCh11G003310	Cucurbita maxima (Rimu)	cmacmaB072
CmaCh11G003310	Cucurbita moschata (Rifu)	cmacmoB099
CmaCh11G003310	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G003310	Watermelon (97103) v1	cmawmB143