Cla97C06G123480 (gene) Watermelon (97103) v2

Overview
NameCla97C06G123480
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPre T-cell antigen receptor alpha
LocationCla97Chr06 : 25808729 .. 25810820 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATTGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGATGGACTCGCCGGAATTTCGCTATTGTGGGTCTCTTTGGCATCGCCATTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTGTAATATCATTTCTCTCGATCTTTTTCTTTCTTTACTACTTTCGATCTTTTTGTTTCGTGATCCGTTGACGCCCATCCACAGCGTGTGTTTCAATCTGGGGTGAAATTTTTCTTTTTAGGGTTTCCATTTTTTCCCCCGTGTTTGCGACTCTGGATTCCTTTGGAATTGAAGCTGTTGGTCCTAATTTCCTTGATTGGCCCTGATGATCTTCTAATTGGCTAATTTCTTTTTACGTCATTCGTTTGTTCATTGGGCCTGGAATTCACGTGTTTTGTTTGTTACTGCTGGTTATGATTTTAAAACCGGGTTGGAGAATACAAGTTTCTTTTATTCCTTTTGTGAACATTGGTTAGCACTAGCTTGGAGCATTTCATCGGCAATCGAAATTCTTTCTTTTTTAAAATGATAGATTTGAGTTTGCTTTTCAGTTTACTGCTTACTGCTTAGATACTTGTTCCATTGGATTGCCGCGTCTACTTGCTGGAAGTTGTGTGTTTTAAATCTTCTATGTTGAGGATCCGACTTGAGTTTATCAAGTGGCTTCACAATGTTTATAGATACATAGGCTACTCTTTTCTTTCCATGGCAATTGGTTTTGAGATGGAATTCATATTATCTAACTTTCTATCGTTGTAAGACTTCCACTACCTAAAGAGAATGTGGAAAGAAAGGGGTGACAGGAACGCTGATCCTACATTCAAAATGGAGGAAGATGGCAAAAATCCTCTTATTTGTCCACTAATTGAGATAAAATCGGTTTCTTCTCAATAGTTTGGAATCAAGATAAGAAATGACGGGTTTGAAAAATTAGAAATGGTTTTAAACTATTCATATTTTTTTGGGTTAACTTGAGCTTAGCTTAGTGAATAAGGAATCTACTCCTTTCTTTGAGGTGGGATGTTTGAGTCCTGATTCCATCCCCACATTTGTTGGAATAAAAAGGGTGATTAACATCTTTTGTTGGGATGCTTCGTGGTAATAAAATAAAAATTAAAAAATTTGTGTTATTACCTTTCCATCATAATGTGTTTCCGGTGAGTTAAATTCTGACGACTCTAGATTTCTAGGCAATCCTATGAGATGGTTCTTCTTGTGATTTTGGAGGATCACGCATGATGATATTTGCTTTACTGTCTGATGGAAATAATGCTTCCATTGTTCATAGAACCTTCATTGGAGGAAATAAAATTGTTGTGTCTATAGTATGTTTTGCATCTGCGCTATTCAGCAGTAATACGATATTGTGGATGTTGGTGGTTTGACCCATCTTGTAACTGTTGTTTTCCATTAAAATTTGCATGTAGTTTTTGTTTGTGATTTTTCATTTATATTAGTGTTCCTTCTTGTCTGTAACTTTCAAGGTGCGGTGCACTCTTTTATTGAGCTTTCTTCTAAAAGATAACTTGGTTTATGTTGACAGCATATGCAAGATGAAGATGCAGGCAGACCGTACCGGAAGTTTTTTTGAGCACTGTTCCAGGCGCTGCAATAATTTCATGGAGTAATAAAACCTTTCTTATCTATGTGAACATCCCAATTTGGATTCTGGAACAATATTGCATCTTTCTTTGAAGTTGTAGAAGTGATGCTATGCAAGTTTACTCTGTATTTTATGACATTTTGTGAATGCTGAGTATTTTCAGTTTAAAGTCCTGGCTTTCAAAATTATCATGAATATAGACCATTTTTGTTTTTGTTTTTGTTCTTTTTCTTAACATGGGATGCTTGAATTATCCCCAGTTGTTAGAATAGCTCAAGAATGCCATAATTTTGTTGTGACAACTGGTTATAAACTCATAGGTGGTAAATTGTTATTTATATATTGCTTGGTCAGAAAATAAAGTATATTGTTGGCTTTTCTTGTTGAATCTAGAAACAGAGATTTTGTTTTGGAATCCATTTTTTAAGCCCAAAAGCGTATGA

mRNA sequence

ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATTGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGATGGACTCGCCGGAATTTCGCTATTGTGGGTCTCTTTGGCATCGCCATTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTCCCAAAAGCGTATGA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATTGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGATGGACTCGCCGGAATTTCGCTATTGTGGGTCTCTTTGGCATCGCCATTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTCCCAAAAGCGTATGA

Protein sequence

MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREFPKSV
Homology
[Close]
BLAST of Cla97C06G123480 vs. NCBI nr
Match: XP_022988537.1 (uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharacterized protein LOC111780310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEAHKNRFIEDW +ARENLEHNFRWTRRNFA+VGLFGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. NCBI nr
Match: XP_022930869.1 (uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 uncharacterized protein LOC111469278 [Cucurbita maxima] >XP_023529258.1 uncharacterized protein LOC111792156 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA KNRFIEDWG+ARENLEHNFRWTRRNFA+VG+FGIAIPLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. NCBI nr
Match: XP_022921830.1 (uncharacterized protein LOC111429971 [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDW +ARENLEHNFRWTRRNFA+VGLFGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. NCBI nr
Match: KCW78476.1 (hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDWG+ARE LEHNFRWTRRNFA+VG+FG+AIPLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. NCBI nr
Match: XP_012471613.1 (PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii] >XP_016713471.1 PREDICTED: uncharacterized protein LOC107927018 [Gossypium hirsutum] >KJB20377.1 hypothetical protein B456_003G145600 [Gossypium raimondii] >PPD91468.1 hypothetical protein GOBAR_DD11612 [Gossypium barbadense])

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA+KNRFIEDWG+ARENLEHNFRWTRRNFA+VG+FGIAIP+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TrEMBL
Match: tr|A0A2I4HAE4|A0A2I4HAE4_9ROSI (uncharacterized protein LOC108981675 OS=Juglans regia OX=51240 GN=LOC109015106 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 50/56 (89.29%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA+KNRFIEDWG+ARENLEHNFRWTRRNFA+VGLFG+A+P+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGLFGLAVPILVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TrEMBL
Match: tr|A0A059CK03|A0A059CK03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDWG+ARE LEHNFRWTRRNFA+VG+FG+AIPLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TrEMBL
Match: tr|A0A1U8LFU4|A0A1U8LFU4_GOSHI (uncharacterized protein LOC107927018 OS=Gossypium hirsutum OX=3635 GN=LOC107927018 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA+KNRFIEDWG+ARENLEHNFRWTRRNFA+VG+FGIAIP+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TrEMBL
Match: tr|A0A0D2MNV8|A0A0D2MNV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G145600 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA+KNRFIEDWG+ARENLEHNFRWTRRNFA+VG+FGIAIP+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TrEMBL
Match: tr|A0A2P5RXE1|A0A2P5RXE1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11612 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-23
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGMEA+KNRFIEDWG+ARENLEHNFRWTRRNFA+VG+FGIAIP+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREF 56

[Close]
BLAST of Cla97C06G123480 vs. TAIR10
Match: AT2G31490.1 (unknown protein)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-24
Identity = 44/56 (78.57%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFAIVGLFGIAIPLLVYKGIVREF 57
          MGGGME +KN+FIEDWG+ARENLEHNFRWTRRNFA++G+FGIA+P++VYKGIV++F
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDF 56

The following BLAST results are available for this feature:
BLAST of Cla97C06G123480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988537.12.7e-2392.86uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharac... [more]
XP_022930869.16.1e-2392.86uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 unchar... [more]
XP_022921830.16.1e-2391.07uncharacterized protein LOC111429971 [Cucurbita moschata][more]
KCW78476.11.0e-2289.29hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis][more]
XP_012471613.11.0e-2291.07PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii] >XP_016713... [more]
BLAST of Cla97C06G123480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I4HAE4|A0A2I4HAE4_9ROSI6.8e-2389.29uncharacterized protein LOC108981675 OS=Juglans regia OX=51240 GN=LOC109015106 P... [more]
tr|A0A059CK03|A0A059CK03_EUCGR6.8e-2389.29Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV... [more]
tr|A0A1U8LFU4|A0A1U8LFU4_GOSHI6.8e-2391.07uncharacterized protein LOC107927018 OS=Gossypium hirsutum OX=3635 GN=LOC1079270... [more]
tr|A0A0D2MNV8|A0A0D2MNV8_GOSRA6.8e-2391.07Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G145600 PE=4 ... [more]
tr|A0A2P5RXE1|A0A2P5RXE1_GOSBA6.8e-2391.07Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11612 PE=4 SV... [more]
BLAST of Cla97C06G123480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G123480 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31490.11.8e-2478.57unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009853 photorespiration
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G123480.1Cla97C06G123480.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35479FAMILY NOT NAMEDcoord: 1..57

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G123480Csa1G025860Cucumber (Chinese Long) v2cuwmbB079
Cla97C06G123480MELO3C017388Melon (DHL92) v3.5.1mewmbB261
Cla97C06G123480ClCG06G014030Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G123480CSPI01G04640Wild cucumber (PI 183967)cpiwmbB080
Cla97C06G123480Cucsa.111820Cucumber (Gy14) v1cgywmbB160
Cla97C06G123480CmaCh11G003310Cucurbita maxima (Rimu)cmawmbB139
Cla97C06G123480CmoCh11G003360Cucurbita moschata (Rifu)cmowmbB123
Cla97C06G123480Lsi06G012440Bottle gourd (USVL1VR-Ls)lsiwmbB374
Cla97C06G123480CsGy1G004530Cucumber (Gy14) v2cgybwmbB077
Cla97C06G123480MELO3C017388.2Melon (DHL92) v3.6.1medwmbB247
Cla97C06G123480Carg09081Silver-seed gourdcarwmbB0623
Cla97C06G123480Carg15198Silver-seed gourdcarwmbB0827
Cla97C06G123480CsaV3_1G004610Cucumber (Chinese Long) v3cucwmbB077
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G123480Cucurbita maxima (Rimu)cmawmbB081
Cla97C06G123480Cucurbita moschata (Rifu)cmowmbB070
Cla97C06G123480Watermelon (97103) v1wmwmbB406
Cla97C06G123480Wax gourdwgowmbB656