Carg15198 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15198
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Neuronal acetylcholine receptor subunit alpha
Location	Cucurbita_argyrosperma_scaffold_073 : 309011 .. 309274 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTGTAATATCATTTCTCTCTTTTCTCTTTGGCGATCTTTTTCTTGCATTAGTACGTGGTTTGATTTATATTCGATCGTTTCGTTTCGTGATCCGTTGA

mRNA sequence

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTGTAATATCATTTCTCTCTTTTCTCTTTGGCGATCTTTTTCTTGCATTAGTACGTGGTTTGATTTATATTCGATCGTTTCGTTTCGTGATCCGTTGA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTGTAATATCATTTCTCTCTTTTCTCTTTGGCGATCTTTTTCTTGCATTAGTACGTGGTTTGATTTATATTCGATCGTTTCGTTTCGTGATCCGTTGA

Protein sequence

MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISFLSFLFGDLFLALVRGLIYIRSFRFVIR

Homology

[Close]

BLAST of Carg15198 vs. NCBI nr
Match: XP_022921830.1 (uncharacterized protein LOC111429971 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. NCBI nr
Match: OMO61361.1 (hypothetical protein COLO4_33448 [Corchorus olitorius])

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-24
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISF 60
          MGGGMEA+KNKFIEDWSSARENLEHNFRWTRRN ALVGLFGIA+P+LVYKGIVREFV  F
Sbjct: 1  MGGGMEANKNKFIEDWSSARENLEHNFRWTRRNLALVGLFGIALPVLVYKGIVREFVFPF 60

Query: 61 LSFLFGDLFLALVRGLIYIRSF 83
          +SFL    +L      + + SF
Sbjct: 61 ISFLRLSAYLIFSLETLIVYSF 82

[Close]

BLAST of Carg15198 vs. NCBI nr
Match: XP_022988537.1 (uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharacterized protein LOC111780310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. NCBI nr
Match: XP_007025728.1 (PREDICTED: uncharacterized protein LOC18596917 [Theobroma cacao] >EOY28350.1 Pre T-cell antigen receptor alpha [Theobroma cacao])

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEA+KN+FIEDWSSARENLEHNFRWTRRNFALVGLFGIA+P+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. NCBI nr
Match: KCW78476.1 (hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis])

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEAHKNKFIEDW SARE LEHNFRWTRRNFALVG+FG+A+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. TAIR10
Match: AT2G31490.1 (unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 3.3e-24
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGME +KNKFIEDW SARENLEHNFRWTRRNFAL+G+FGIA+P++VYKGIV++F
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDF 56

[Close]

BLAST of Carg15198 vs. TrEMBL
Match: tr|A0A1R3GTK8|A0A1R3GTK8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33448 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.3e-24
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISF 60
          MGGGMEA+KNKFIEDWSSARENLEHNFRWTRRN ALVGLFGIA+P+LVYKGIVREFV  F
Sbjct: 1  MGGGMEANKNKFIEDWSSARENLEHNFRWTRRNLALVGLFGIALPVLVYKGIVREFVFPF 60

Query: 61 LSFLFGDLFLALVRGLIYIRSF 83
          +SFL    +L      + + SF
Sbjct: 61 ISFLRLSAYLIFSLETLIVYSF 82

[Close]

BLAST of Carg15198 vs. TrEMBL
Match: tr|A0A059CK03|A0A059CK03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-22
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEAHKNKFIEDW SARE LEHNFRWTRRNFALVG+FG+A+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. TrEMBL
Match: tr|A0A061GEQ2|A0A061GEQ2_THECC (Pre T-cell antigen receptor alpha OS=Theobroma cacao OX=3641 GN=TCM_029947 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-22
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEA+KN+FIEDWSSARENLEHNFRWTRRNFALVGLFGIA+P+LVYKGIVREF
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREF 56

[Close]

BLAST of Carg15198 vs. TrEMBL
Match: tr|A0A164ZX19|A0A164ZX19_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019791 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISF 60
          MGGGMEA+KN++IE+W SARENLEHNFRWTRRNFALVG+FGIA+P+LVYKGIV+EFVIS 
Sbjct: 1  MGGGMEANKNRWIEEWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVKEFVISR 60

Query: 61 LSFLFGDLFLALVRGLIY 79
          L F     F  L   L+Y
Sbjct: 61 LLFFASCRFALLPSMLVY 78

[Close]

BLAST of Carg15198 vs. TrEMBL
Match: tr|A0A2I4EVB0|A0A2I4EVB0_9ROSI (uncharacterized protein LOC108993022 OS=Juglans regia OX=51240 GN=LOC108993022 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 57
          MGGGMEA+KNKFIEDW SARENLEHNFRWTRRNFALVG+FG+AVP+LVYKGIVREF
Sbjct: 1  MGGGMEANKNKFIEDWGSARENLEHNFRWTRRNFALVGIFGLAVPILVYKGIVREF 56

The following BLAST results are available for this feature:

BLAST of Carg15198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921830.1	4.7e-24	100.00	uncharacterized protein LOC111429971 [Cucurbita moschata]	[more]
OMO61361.1	7.9e-24	73.17	hypothetical protein COLO4_33448 [Corchorus olitorius]	[more]
XP_022988537.1	1.0e-23	98.21	uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharac...	[more]
XP_007025728.1	2.0e-22	92.86	PREDICTED: uncharacterized protein LOC18596917 [Theobroma cacao] >EOY28350.1 Pre...	[more]
KCW78476.1	2.0e-22	91.07	hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis]	[more]

BLAST of Carg15198 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31490.1	3.3e-24	82.14	unknown protein	[more]

BLAST of Carg15198 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15198 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3GTK8\|A0A1R3GTK8_9ROSI	5.3e-24	73.17	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33448 PE=4 SV=1	[more]
tr\|A0A059CK03\|A0A059CK03_EUCGR	1.3e-22	91.07	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV...	[more]
tr\|A0A061GEQ2\|A0A061GEQ2_THECC	1.3e-22	92.86	Pre T-cell antigen receptor alpha OS=Theobroma cacao OX=3641 GN=TCM_029947 PE=4 ...	[more]
tr\|A0A164ZX19\|A0A164ZX19_DAUCA	2.2e-22	71.79	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019791 ...	[more]
tr\|A0A2I4EVB0\|A0A2I4EVB0_9ROSI	2.9e-22	91.07	uncharacterized protein LOC108993022 OS=Juglans regia OX=51240 GN=LOC108993022 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15198-RA	Carg15198-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479	FAMILY NOT NAMED	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15198	Csa1G025860	Cucumber (Chinese Long) v2	carcuB0801
Carg15198	MELO3C017388	Melon (DHL92) v3.5.1	carmeB0785
Carg15198	ClCG06G014030	Watermelon (Charleston Gray)	carwcgB0764
Carg15198	CSPI01G04640	Wild cucumber (PI 183967)	carcpiB0821
Carg15198	Cucsa.111820	Cucumber (Gy14) v1	carcgyB0897
Carg15198	CmaCh11G003310	Cucurbita maxima (Rimu)	carcmaB1092
Carg15198	Lsi06G012440	Bottle gourd (USVL1VR-Ls)	carlsiB726
Carg15198	Cp4.1LG04g13420	Cucurbita pepo (Zucchini)	carcpeB1106
Carg15198	Cp4.1LG18g06640	Cucurbita pepo (Zucchini)	carcpeB1103
Carg15198	CsGy1G004530	Cucumber (Gy14) v2	carcgybB0778
Carg15198	MELO3C017388.2	Melon (DHL92) v3.6.1	carmedB0797
Carg15198	CsaV3_1G004610	Cucumber (Chinese Long) v3	carcucB0824
Carg15198	Cla97C06G123480	Watermelon (97103) v2	carwmbB0827

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15198	Carg09081	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15198	Cucurbita maxima (Rimu)	carcmaB1091
Carg15198	Cucurbita moschata (Rifu)	carcmoB1063
Carg15198	Cucurbita moschata (Rifu)	carcmoB1064
Carg15198	Watermelon (97103) v1	carwmB0789
Carg15198	Wax gourd	carwgoB0924