Cp4.1LG18g06640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g06640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPre T-cell antigen receptor alpha
LocationCp4.1LG18 : 6694577 .. 6698402 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTAGTCATTATAAAAGAAAAAAATACATTTTTTTTTTTGAAAATAATATTTGTAAAGGGTGAAAATTTATCGACCGGCCGAACCACAGGGAGGAAACAGACGAGGGAAAACTGCGCAGAGAGCGAGGGAGTTTGCAAGCAGAGAAGAGGAGAAATTTGGAGAGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTGTAATATCATTTCTCTCTTTTCTCTTTTGCGATCTTTTTCTTGCATTAGTATGTGGTTTGATTTATATTCGATCGTTTCGTTTCGTGATCCGTTGACGCACATCCACGGCGTTTGTTTCAATCCGGGTTGAAATTGTTCTTTTTAGGGTTTCCATTTTTTTTTTTTTTACCTGTTTTCGATTCTGGATTTCCTTTCTACTAAATTGTTTTGAAGTGATGAAGAATTTGGTCCTATTTTCCTGGACTGGCCGTGTCGATCTTCCAATTGGCCAATTTATTTTGGCGTGATTCGTTTATTTATAGGACCTGGAATTCACATGTTTTCTTTAATTGCTAGTTATGATTTTAGTACCGGATTGGAGAATACAAGTTTTTAATTTCCTTTTGTGTGAGCATTGGTACTAACTTCCAGCATCTCGCGGCAATCCTTTCCTTTCTGAAAGGATAGAATTTAGTTTGCTTTTCAATTTACTGTTTGGTACTTGTTCTTTTGGATCGTCATTGCTACTTGCTGTTCTAAATCTTCAATATCTGTATGTTAATAAGAATGACTTCCATCACCAAAAGAGAATGTGCAAAGAAAGGGTGACAGGAAGGCTGATCCCTGTTGTTCGTCCACTTGTTGAGATGAAATAAATTTCTTCTCAAGAGTTTGAAATCAAGAAATTATTAGAAATGAATGATTTGAAAAAGTAGAAATGATTTAAAACTGTGTTCATCTTCGAAGTTAGAGGTTCAATTCTCAGACTCCATCCCCATGTGTTTGCTTCTGAGATATTGGGTGGTCTGACTCCTATCTTGTAGCTGTGTTCATCTTTGATTTTTCTCATGTTTGTTTCTTTTCCATTAAAATTTGCACGTAGTTTTTGTTTGTTTTTCTCCATTTATGTAAGTTTTCCTTCTCATTATTGAGTCGCCAATTGCCTGTTGAGATGTGGTGCACTCTTTATCAAGCTTTCTTCTAAAATATAACTTGGTTTATAACAATATGATGACAGCATATGCAAGATGAGGATGCAGGCAGACCTTACCGGAAGTTCTTTTGAGCACCGCACCAGGCACTCCAATAATTTCTTGCAGTAACAAAACCCTTCTTATCTATGTGAACACTAATCCCTGCCAATTTGGATTCTGGGACAATATTGCTTCTTTCTTTTAAGTTGTAGAAGTGATGCTATGCAAGTTTACACTATATTTTATGACATTTTGTGAATGCTGAGTATTTTTCATCTAACCATGAATATATAGACCATTTTTCTTACTCTTTTTGTTCTTTTTCTTAACATGGGTGCTCGGATTATCAGCAGCTGTGAAAATTCCTCAGGATTGTGATAGTTTACAAGATGATAGGTGGTAAATTGTTAGTTATAGCCTGTTTAGAAAATTGGGTATTGTTGCCTTTTCCTTGTTGATTCTAGGAACACAGGTTTTCAAAGTTAAAGCATGTTGTGTGTAGATATTCCAGAGAGATTGATGGATGGTTCCGTAGATTTCCAATAGCGTGAGATTCCGCCTCAGTTGGAGAGGGAAATGAAACATGCCTGATAAGACTGTAGGTATCTAACAGATGCGTTATAAAATTGTAAGTCTCCGGTGATACATAACATGTCTGCTTGAGACAGTATCTACTAGTAGTGGGTTTGGATTGTCACAAGTAACAAGATTGAAAATTGAAGACATTGTTTGCTCATAGGTATTGATTGATGAGCCGTCATGGAAATTTGATAGCAAATTCTTATCACATTTACTATGGAAATGTTACCATTCAAAGATAGTGAATGCCCAACTTTTGTATGGTTATCATGTTTTAAATTACGTATAATTTAGGATATCATTTTAATTCGATAATTTTTATTTAATAATGTTCGATTAGAATGACATAAATATTATGTAAGTTTATGTATTTTTTTACTATTTTTACAACGCTCATCAAAGTTAAGTCAAAGTTAAGTCGAAAAATGATATTATGACTTGTTTAATTTTTTTACTATAAGATTATAATTTAAAAGAATATATTTTGGGACGGTTAATTTTAATTCTAATACTTTCAACTTCATTCTTATTGCTAGTTTATTGCTAAAAAATTTCAATTTTTATTACTTATGAGTTTTTCTATTATTATCTACAATAAATTTTGTATATTCGCATAGTATTTGGCATGAAATAATTAAAAATTAATTTAAAAGGACTAATTTAAGACAAATATTTTCAAAGGCTTGCGCAACATTGAACTGGCTATAGCCGGTCATAGCCCACAAGCAAGCCGGTCCACGTGTGTGGTGTATTTAGGGTTTAAAGGACCTACGACTACGGTCCCGCGAAATAAGAAGAACCAGAAGAACCAGAAGGTACCAGTACTGTGCAGAGATCGAATTCTCGCAGCAATGGCGTCGAAGGTTTCTCTTAGAAGCAAGGGCAAGAGCTCCAAGGGCTCATCGAAGTCATCTGAGGATAAATCCACAACCCAAGCCTTCAAGGAGTGGACTACTTGGGCCGTAAAGAAAGCCAAGGTCATCACTCACTATGGCTTTATTCCTCTGGTCATCATCATCGGCATGAACTCCGAGCCAAAGCCTCAGCTTTCCCAGCTTCTCAGCCCCGTCTGATCTGATTGCTCTCTATACGTTGGTTTTCAGGATTTATATCTTTTTATGATGGATCGGTGCCTTTTCGTCGATTCACGACTTGGATTTATGTTTTTTGGGGGTTAGATAGCGCTTGAAGTTTAGATAGGTTTGGGTATAATACTTCGCTGCTTATGCTTGGTATGCTTGAACTACAATAGACATGTAATAGTTTGAGCAAAAATTTTAATTTCTTCTGAAATATCTGATTATGCTATCGCTTTACCGGTATGAATCTTGGTGCACTTCTCTTCTCCGAATTTTGTCTGTTTATTCAAATAATTGAATGGTGTTAAGGTTTATTTGCGCTATCTGATCCTTCAAGACTGTCATGGATGAATCATACAAGAGTGATAGGGCTGTATTATCGAAAAGCCCATTTTGTTGTGGCTGTTTTTCTTTCCTTCTCTCGCAAGTTTATAGTAATTGGTCAAGGATTTATACTCACCATTGCATGACTTGAATCTATTATCTTTCATTATGTTCCAATATTTAAATGTTTACTTTAAATTGTGATAATGAAATGCAATGTCTGAAGTCACCCTGATAGGCATTCATGTTCTTAGTATCATGTGTTATCTAGCCTATGAGTATGTTCTGTTTTCATTTTCCATTAATGTTCTATGTGTAGTTCCTCCTATAATAATACTTAACAGGGTTAGTTTGTCTCTAACCCAGAATTTTAGTCTTTGTTCATTGGGATTATCCTCTGTCATCTCCTGAGTTGTGATGAACCCATATCAATGCCCTCTACTGGCTCATTTGTTCTCTTGAGTTGTGTAGGTCTATATTGCATATTGTACTCAAAATCTGTCTCGTGTACAGCTCTCTTCATTCCCTCAAAGATTGGGCACAATTTT

mRNA sequence

TAATTTAGTCATTATAAAAGAAAAAAATACATTTTTTTTTTTGAAAATAATATTTGTAAAGGGTGAAAATTTATCGACCGGCCGAACCACAGGGAGGAAACAGACGAGGGAAAACTGCGCAGAGAGCGAGGGAGTTTGCAAGCAGAGAAGAGGAGAAATTTGGAGAGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTCATATGCAAGATGAGGATGCAGGCAGACCTTACCGGAAGTTCTTTTGAGCACCGCACCAGGCACTCCAATAATTTCTTGCAGTAACAAAACCCTTCTTATCTATGTGAACACTAATCCCTGCCAATTTGGATTCTGGGACAATATTGCTTCTTTCTTTTAAGTTGTAGAAGTGATGCTATGCAAGTTTACACTATATTTTATGACATTTTGTGAATGCTGAGTATTTTTCATCTAACCATGAATATATAGACCATTTTTCTTACTCTTTTTGTTCTTTTTCTTAACATGGGTGCTCGGATTATCAGCAGCTGTGAAAATTCCTCAGGATTGTGATAGTTTACAAGATGATAGGTGGTAAATTGTTAGTTATAGCCTGTTTAGAAAATTGGGTATTGTTGCCTTTTCCTTGTTGATTCTAGGAACACAGGTTTTCAAAGTTAAAGCATGTTGTGTGTAGATATTCCAGAGAGATTGATGGATGGTTCCGTAGATTTCCAATAGCGTGAGATTCCGCCTCAGTTGGAGAGGGAAATGAAACATGCCTGATAAGACTGTAGGTATCTAACAGATGCGTTATAAAATTGCTTGCGCAACATTGAACTGGCTATAGCCGGTCATAGCCCACAAGCAAGCCGGTCCACGTGTGTGGTGTATTTAGGGTTTAAAGGACCTACGACTACGGTCCCGCGAAATAAGAAGAACCAGAAGAACCAGAAGGTACCAGTACTGTGCAGAGATCGAATTCTCGCAGCAATGGCGTCGAAGGTTTCTCTTAGAAGCAAGGGCAAGAGCTCCAAGGGCTCATCGAAGTCATCTGAGGATAAATCCACAACCCAAGCCTTCAAGGAGTGGACTACTTGGGCCGTAAAGAAAGCCAAGGTCATCACTCACTATGGCTTTATTCCTCTGGTCATCATCATCGGCATGAACTCCGAGCCAAAGCCTCAGCTTTCCCAGCTTCTCAGCCCCGTCTGATCTGATTGCTCTCTATACGTTGGTTTTCAGGATTTATATCTTTTTATGATGGATCGGTGCCTTTTCGTCGATTCACGACTTGGATTTATGTTTTTTGGGGGTTAGATAGCGCTTGAAGTTTAGATAGGTTTGGGTATAATACTTCGCTGCTTATGCTTGGTATGCTTGAACTACAATAGACATGTAATAGTTTGAGCAAAAATTTTAATTTCTTCTGAAATATCTGATTATGCTATCGCTTTACCGGTATGAATCTTGGTGCACTTCTCTTCTCCGAATTTTGTCTGTTTATTCAAATAATTGAATGGTGTTAAGGTTTATTTGCGCTATCTGATCCTTCAAGACTGTCATGGATGAATCATACAAGAGTGATAGGGCTGTATTATCGAAAAGCCCATTTTGTTGTGGCTGTTTTTCTTTCCTTCTCTCGCAAGTTTATAGTAATTGGTCAAGGATTTATACTCACCATTGCATGACTTGAATCTATTATCTTTCATTATGTTCCAATATTTAAATGTTTACTTTAAATTGTGATAATGAAATGCAATGTCTGAAGTCACCCTGATAGGCATTCATGTTCTTAGTATCATGTGTTATCTAGCCTATGAGTATGTTCTGTTTTCATTTTCCATTAATGTTCTATGTGTAGTTCCTCCTATAATAATACTTAACAGGGTTAGTTTGTCTCTAACCCAGAATTTTAGTCTTTGTTCATTGGGATTATCCTCTGTCATCTCCTGAGTTGTGATGAACCCATATCAATGCCCTCTACTGGCTCATTTGTTCTCTTGAGTTGTGTAGGTCTATATTGCATATTGTACTCAAAATCTGTCTCGTGTACAGCTCTCTTCATTCCCTCAAAGATTGGGCACAATTTT

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGACTGGAGTTCTGCTAGAGAAAATCTTGAGCATAACTTCCGCTGGACTCGCCGGAACTTTGCTCTTGTCGGTCTTTTCGGCATCGCCGTTCCCCTCCTTGTTTACAAGGGCATCGTCAGGGAATTTCATATGCAAGATGAGGATGCAGGCAGACCTTACCGGAAGTTCTTTTGA

Protein sequence

MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQDEDAGRPYRKFF
Homology
[Close]
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match: A0A061GEQ2_THECC (Pre T-cell antigen receptor alpha OS=Theobroma cacao GN=TCM_029947 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-33
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA+KNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match: A0A0D2MNV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G145600 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.7e-32
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA+KNRFIEDW SARENLEHNFRWTRRNFALVG+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match: A0A059CK03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.7e-32
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEAHKN+FIEDW SARE LEHNFRWTRRNFALVG+FG+A+PLLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match: A0A0B0NWR1_GOSAR (Neuronal acetylcholine receptor subunit alpha-5 OS=Gossypium arboreum GN=F383_22652 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-31
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA+KNRFIEDWSSARENLEHNFRWTRRN ALVG+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match: A0A0K9RHR8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071180 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-31
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIEDW SARENLEHNFRWTRRNFAL+G+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEASKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. TAIR10
Match: AT2G31490.1 (AT2G31490.1 unknown protein)

HSP 1 Score: 137.9 bits (346), Expect = 2.4e-33
Identity = 58/70 (82.86%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGME +KN+FIEDW SARENLEHNFRWTRRNFAL+G+FGIA+P++VYKGIV++FHMQD
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRP+RKF
Sbjct: 61 EDAGRPHRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match: gi|590624878|ref|XP_007025728.1| (Pre T-cell antigen receptor alpha [Theobroma cacao])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-33
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA+KNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match: gi|702329097|ref|XP_010054100.1| (PREDICTED: uncharacterized protein LOC104442378 [Eucalyptus grandis])

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEAHKN+FIEDW SARE LEHNFRWTRRNFALVG+FG+A+PLLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match: gi|823143610|ref|XP_012471613.1| (PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii])

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA+KNRFIEDW SARENLEHNFRWTRRNFALVG+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match: gi|729346618|ref|XP_010541972.1| (PREDICTED: uncharacterized protein LOC104815318 [Tarenaya hassleriana])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGME +KNRFIEDWSSARENLEHNFRWTRRN ALVG+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMETNKNRFIEDWSSARENLEHNFRWTRRNLALVGIFGIALPILVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

[Close]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match: gi|902219737|gb|KNA18397.1| (hypothetical protein SOVF_071180 [Spinacia oleracea])

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFHMQD 60
          MGGGMEA KN+FIEDW SARENLEHNFRWTRRNFAL+G+FGIA+P+LVYKGIVREFHMQD
Sbjct: 1  MGGGMEASKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRPYRKF
Sbjct: 61 EDAGRPYRKF 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g06640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g06640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061GEQ2_THECC2.7e-3395.71Pre T-cell antigen receptor alpha OS=Theobroma cacao GN=TCM_029947 PE=4 SV=1[more]
A0A0D2MNV8_GOSRA6.7e-3291.43Uncharacterized protein OS=Gossypium raimondii GN=B456_003G145600 PE=4 SV=1[more]
A0A059CK03_EUCGR6.7e-3290.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02622 PE=4 SV=1[more]
A0A0B0NWR1_GOSAR1.2e-3191.43Neuronal acetylcholine receptor subunit alpha-5 OS=Gossypium arboreum GN=F383_22... [more]
A0A0K9RHR8_SPIOL1.2e-3190.00Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071180 PE=4 SV=1[more]
BLAST of Cp4.1LG18g06640 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31490.12.4e-3382.86 unknown protein[more]
BLAST of Cp4.1LG18g06640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590624878|ref|XP_007025728.1|3.9e-3395.71Pre T-cell antigen receptor alpha [Theobroma cacao][more]
gi|702329097|ref|XP_010054100.1|9.7e-3290.00PREDICTED: uncharacterized protein LOC104442378 [Eucalyptus grandis][more]
gi|823143610|ref|XP_012471613.1|9.7e-3291.43PREDICTED: uncharacterized protein LOC105788991 [Gossypium raimondii][more]
gi|729346618|ref|XP_010541972.1|1.3e-3191.43PREDICTED: uncharacterized protein LOC104815318 [Tarenaya hassleriana][more]
gi|902219737|gb|KNA18397.1|1.7e-3190.00hypothetical protein SOVF_071180 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009853 photorespiration
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g06640.1Cp4.1LG18g06640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35479FAMILY NOT NAMEDcoord: 2..71
score: 1.7
NoneNo IPR availablePANTHERPTHR35479:SF1SUBFAMILY NOT NAMEDcoord: 2..71
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g06640Cucsa.111820Cucumber (Gy14) v1cgycpeB0253
Cp4.1LG18g06640CmaCh11G003310Cucurbita maxima (Rimu)cmacpeB132
Cp4.1LG18g06640CmoCh11G003360Cucurbita moschata (Rifu)cmocpeB108
Cp4.1LG18g06640Csa1G025860Cucumber (Chinese Long) v2cpecuB363
Cp4.1LG18g06640MELO3C017388Melon (DHL92) v3.5.1cpemeB330
Cp4.1LG18g06640ClCG06G014030Watermelon (Charleston Gray)cpewcgB335
Cp4.1LG18g06640CSPI01G04640Wild cucumber (PI 183967)cpecpiB363
Cp4.1LG18g06640Lsi06G012440Bottle gourd (USVL1VR-Ls)cpelsiB301
Cp4.1LG18g06640MELO3C017388.2Melon (DHL92) v3.6.1cpemedB388
Cp4.1LG18g06640CsaV3_1G004610Cucumber (Chinese Long) v3cpecucB0444
Cp4.1LG18g06640CsGy1G004530Cucumber (Gy14) v2cgybcpeB055
Cp4.1LG18g06640Carg09081Silver-seed gourdcarcpeB0843
Cp4.1LG18g06640Carg15198Silver-seed gourdcarcpeB1103
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g06640Cp4.1LG04g13420Cucurbita pepo (Zucchini)cpecpeB360
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g06640Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g06640Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g06640Watermelon (97103) v1cpewmB372
Cp4.1LG18g06640Wax gourdcpewgoB0467