Csa1G025860.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025860.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TOR kinase binding protein
Location	Chr1 : 2894728 .. 2897162 (-)
Sequence length	216

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGTGAAAATTCTTCGACCGGTGAGCCACAAGGCTAAGTGAAGGAACAAGCGAGGGTAAACTTCAAAGAGAGAGAGTTTGAAGGAAGAGAAGCAGAGAAAATCGAGCCGAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCGTAATATCATTTCTCTCCATCTTTTTCTTCCTTTAGTATGTCGTTTGATTTATTTTCCATCTTTTTCTTTCGTGATCCGTTCACGCCCATTCACAGAGTGTGCGTCAATCTGGGGTAAATTTGTTCTTTTTAGGGTTTCCAATTTTTTAGTCTGTTTTCGACTCTGGATTCCTTTATACTTGATTGTTAATTAGTGAAATTTTTGGTCTTAACTTCCTGCCTGATGATTTTGCAATTGGTCAATTTCTTTTCCTGTCATTCGTTTGTTCATATTTTTACTGTTGGTTACAATTAAATAACGGGTTGGAGAATACAAATTTTTGATCCATTTTTTTAACATTGGTTGGCACATACTTGTAGCATATCATCTGCATTTTTTTCTTCTTTTTTAAAAGGATAGATTTGAGTTTGCTTTTTGAGTTTACTGCTTAGATACTTGTTCCATTGATTAGCTGCCTCTACTTGCTAGAAGTTATCTATTTTAAATCTTTTATGTTGAGGATGACACATTTAAAAAATTCAGGGGACTTCAGGATGTTTTTTTTAGTTTTTGTTTTTTTGTGTCCACACACAAATTGTGTGACACAACAAAATTACAAAAAAAAAAGCACAACTAATATATAAATTTGGGTTAAGAGTATACTTACAAATGAGTTTAGAAGGCTGAAGGGGAGAATCAAGTAGAAGCAAAAAGAGTAACTAAACTCCAAAAAGAGCCATTATTAGCTTCTTGGTCACTAAAGATTCAGAGTTTCTTTGGAGGGTGAAGATCCTATTGGATCGAAGAGTTTTCACAATGTTTATATAATATCTAGGCTACTCTTCTTATTGCTAGTTGGTTTTGAAACCAACAATGTTAGCTAACATGCCCTTGCCAATTGTTTTGAAATGGAAGCCTACGATATCAAACTTTCTATCTTTGTAGGACTTCCATTACCCAAAGAAAATGGGCAAAGAAAGGGGAGACAGGAAAGCTGATCCTACATTCATGAGGGTGGATACGGAAAAAATCCTACTGTTTTTACATTGGTTGAGTTGAGATAAAATCAGTTTCTTCTCAATAGTTTGAATCAAGATAAGAAAGGACGGGTTTGAAGAAATATAAATGGTTTTTAACTTTTAAATTTTTTGGGTTAACTTGAGCTTAGCGTTGCTTGGTGTTAAGGAATCTACTCCTTGCTTTGAGGTTAGATGTGTGTGTCCTGACTCCACCCTCACTTTTATTGAACTAGAAAATGTGATTAACATTTTTTGTTGGGATATTTGGTGGTAATAAAATAAAAAGTAAGGAATTTCTGTGTGGATAGGGTAGTTCAAATCTGACGACTTTAGATTTCTTGCTAATCTTATGAGATGTTTTTTCTTGTGTTTTTGAAGAATCACGCATGATGATATTTGTTTTACTGTCTAATGGAAATAACGCTTCCATTGTTCATAGAAACCTTCATTGTTCGTAGAAACCTTCATTGGAGGAAATAGAACTTCTGTGTCCAGAGCATGTTTTGCATCTGGATCTGAGATGATATTCAACCTGTCTTCTACCTGTGTTCATCTGTTTTTCTTCTCATTCTGGTTTCTTTTTCATAAATATTTGCCTGTAGTCTTCGTTTGTTATTCCTCATTTATATTAGTTTTTCTTCCCATTATTAAGCTATCGATTGTCTATAATTTTCAAGGTGCAAGTGCACACTTTAACGAGCTTTCTTCTAAAAGTTAACTTGGTTTATAACATTATGATGACAGCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGAGCACCTCATCAGGGCACCGCAATCAGTTTTTTTTTTTTTTTTTAAGTAATAAAACCTTTCTCATCTATGTGAACACTCAACCCTTCCAATTTGGATTATGGGACAATATTGCATCTTTGAAGTTTTAGAAGTGAAGCTGTGCAAGTTTACACTTTATTTTATGACATTTTGTGAATGTTGAGTATTTTCAGTTTGAAGTTCTGCCTTTCAAATTTATCAATACAGACCATTGTTGGTTTTGTTTTTGTTTTTGTTCTTGTTCTTTTCCTTAACATGGGATGCTTGCTCCAGGAGATTTACATCTAAGTATCTAAGTCTCTCAACTTTACGCTATTCATATAATATATATATAGTGCCG

mRNA sequence

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAAATTTATTGAGGATTGGAGTACTGCCAGAGAAAATCTTGAGCTTAATTTTCGCTGGACTCGCCGGAATTTGGCGATTGTGGGTATCTTCGGAATCGCCGTTCCCTATCTTGTTTACAAGGGCATCGTCAGAGAATTCCATATGCAAGATGAGGATGCAGGCAGACCATACCGGAAGTTCTTTTGA

Protein sequence

MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQDEDAGRPYRKFF*

Homology

[Close]

BLAST of Csa1G025860.1 vs. TrEMBL
Match: A0A0A0LPS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025860 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860.1 vs. TrEMBL
Match: A0A0S3TCX4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G260300 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860.1 vs. TrEMBL
Match: A0A0L9VGT5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g001400 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860.1 vs. TrEMBL
Match: A0A0B2S4X0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000818 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLE NFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLEFNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860.1 vs. TrEMBL
Match: V7APR3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G060700g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-30
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIE+W TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860.1 vs. TAIR10
Match: AT2G31490.1 (AT2G31490.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-30
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGME +KNKFIEDW +ARENLE NFRWTRRN A++GIFGIA+P +VYKGIV++FHMQD
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKF 71
          EDAGRP+RKF
Sbjct: 61 EDAGRPHRKF 70

[Close]

BLAST of Csa1G025860.1 vs. NCBI nr
Match: gi|778656577|ref|XP_011649322.1| (PREDICTED: uncharacterized protein LOC101206025 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860.1 vs. NCBI nr
Match: gi|659107103|ref|XP_008453524.1| (PREDICTED: uncharacterized protein LOC103494207 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-33
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGM AHKNKFIEDWSTARENLE NFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD
Sbjct: 1  MGGGMGAHKNKFIEDWSTARENLEYNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKFF
Sbjct: 61 EDAGRPYRKFF 71

[Close]

BLAST of Csa1G025860.1 vs. NCBI nr
Match: gi|747092572|ref|XP_011094059.1| (PREDICTED: uncharacterized protein LOC105173858 [Sesamum indicum])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEAHKN++IEDWS+ARENLELNFRWTRRNLA+VGIFG+AVP LVYKGIV+EFHMQD
Sbjct: 1  MGGGMEAHKNRWIEDWSSARENLELNFRWTRRNLALVGIFGVAVPILVYKGIVKEFHMQD 60

Query: 61 EDAGRPYRKFF 72
          EDAGRPYRKF+
Sbjct: 61 EDAGRPYRKFW 71

[Close]

BLAST of Csa1G025860.1 vs. NCBI nr
Match: gi|920714034|gb|KOM54122.1| (hypothetical protein LR48_Vigan10g001400 [Vigna angularis])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIEDW TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

[Close]

BLAST of Csa1G025860.1 vs. NCBI nr
Match: gi|593264852|ref|XP_007134604.1| (hypothetical protein PHAVU_010G060700g [Phaseolus vulgaris])

HSP 1 Score: 137.9 bits (346), Expect = 7.0e-30
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60
          MGGGMEA+KNKFIE+W TARENLELNFRWTRRNLA+VGIFGIA+P LVYKGIVREFHMQD
Sbjct: 1  MGGGMEANKNKFIEEWGTARENLELNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKF 71
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

The following BLAST results are available for this feature:

BLAST of Csa1G025860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPS8_CUCSA	1.9e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025860 PE=4 SV=1	[more]
A0A0S3TCX4_PHAAN	1.7e-30	91.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G260300 PE=...	[more]
A0A0L9VGT5_PHAAN	1.7e-30	91.43	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g001400 PE=4 SV=1	[more]
A0A0B2S4X0_GLYSO	4.9e-30	90.00	Uncharacterized protein OS=Glycine soja GN=glysoja_000818 PE=4 SV=1	[more]
V7APR3_PHAVU	4.9e-30	90.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G060700g PE=4 SV=1	[more]

BLAST of Csa1G025860.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31490.1	2.0e-30	80.00	unknown protein	[more]

BLAST of Csa1G025860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656577\|ref\|XP_011649322.1\|	2.8e-34	100.00	PREDICTED: uncharacterized protein LOC101206025 [Cucumis sativus]	[more]
gi\|659107103\|ref\|XP_008453524.1\|	6.8e-33	97.18	PREDICTED: uncharacterized protein LOC103494207 [Cucumis melo]	[more]
gi\|747092572\|ref\|XP_011094059.1\|	1.1e-30	88.73	PREDICTED: uncharacterized protein LOC105173858 [Sesamum indicum]	[more]
gi\|920714034\|gb\|KOM54122.1\|	2.4e-30	91.43	hypothetical protein LR48_Vigan10g001400 [Vigna angularis]	[more]
gi\|593264852\|ref\|XP_007134604.1\|	7.0e-30	90.00	hypothetical protein PHAVU_010G060700g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025860	Csa1G025860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G025860.1	Csa1G025860.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G025860.1.utr3p1	Csa1G025860.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G025860.1.cds2	Csa1G025860.1.cds2	CDS
Csa1G025860.1.cds1	Csa1G025860.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G025860.1.utr5p1	Csa1G025860.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479	FAMILY NOT NAMED	coord: 2..71 score: 5.1
None	No IPR available	PANTHER	PTHR35479:SF1	SUBFAMILY NOT NAMED	coord: 2..71 score: 5.1