Csa1G025180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 2780727 .. 2781071 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCCAAGGTTCTTCTAATTGTTCTTCACCGGAATCTTGCATTTTCTTTTTCTTTGTTTGTGTCTGAATGGAATTATTGTGGTGGTTTGTTTGAACAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGA

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCCAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCCAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD*

Homology

[Close]

BLAST of Csa1G025180 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Csa1G025180 vs. TrEMBL
Match: I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 58/92 (63.04%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVS---- 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP       N + N+   DS++SSS +  S    
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSDSANSSSITATSKSKV 60

Query: 61 -----SGFWTLVDMASGRYLWRHLFPSSKKPS 84
               SGFWTLVDMASGRYLWR L PSS K S
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of Csa1G025180 vs. TrEMBL
Match: A0A0A0LVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-21
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60

Query: 61 TLVDMASGRYLWRHLF--PSSKKPSD 85
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Csa1G025180 vs. TrEMBL
Match: D7SJL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 59/88 (67.05%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQ---DFVA-GDNSDDNSNEFDSSDSSSCSKVS 60
           MCPLR ILIFLSATLAGFFVLRNLKSQPQ   D  A GD  D++ ++     S   S + 
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKSSKVLSAIG 92

Query: 61  SGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           SGFWT VDMASGRYLWRHL  SS KPSD
Sbjct: 93  SGFWTCVDMASGRYLWRHLV-SSSKPSD 119

[Close]

BLAST of Csa1G025180 vs. TrEMBL
Match: W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQ-DFVAGDNSDDNSNEFD---------SSDSS 60
          MCPLR ILIFLSATLAGFFVLRNLKSQP+  F +GD + +N +E +         S  S 
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 SCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           CS + SGFWT VDMASGRYLWRHL  S+ K S+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]

BLAST of Csa1G025180 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-17
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKV----S 60
          MCPLR ILIFLSATLAGFFVL+ L S   D +  D+S  ++   D    S  SKV     
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPL--DDSFTDAEHADDDSVSGFSKVGMAMK 60

Query: 61 SGFWTLVDMASGRYLWRHLFPSSKKPS 84
          SGFWT VDMASGRYLW +L  ++K+ S
Sbjct: 61 SGFWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of Csa1G025180 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCP+RF+L+F SA LAG+F  + + S P+      +S D  NE    + +   K+ +GFW
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEF-----DSPDELNE--KQELNLKKKMENGFW 60

Query: 61 TLVDMASGRYLWRHL 76
            VDMASGRYLWR+L
Sbjct: 61 VFVDMASGRYLWRNL 68

[Close]

BLAST of Csa1G025180 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRF+L+F SA LAG+   R + S P+ F + +     + E    D     K+ +G W
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKEKQGLDFK--RKMDNGLW 60

Query: 61 TLVDMASGRYLWRHL 76
          T VDMASGRYLWR+L
Sbjct: 61 TFVDMASGRYLWRNL 72

[Close]

BLAST of Csa1G025180 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Csa1G025180 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDD+S E DSSDS+SCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          T+VDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Csa1G025180 vs. NCBI nr
Match: gi|388522359|gb|AFK49241.1| (unknown [Lotus japonicus])

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-21
Identity = 58/92 (63.04%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVS---- 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP       N + N+   DS++SSS +  S    
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSDSANSSSITATSKSKV 60

Query: 61 -----SGFWTLVDMASGRYLWRHLFPSSKKPS 84
               SGFWTLVDMASGRYLWR L PSS K S
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of Csa1G025180 vs. NCBI nr
Match: gi|700210759|gb|KGN65855.1| (hypothetical protein Csa_1G533620 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.4e-21
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60

Query: 61 TLVDMASGRYLWRHLF--PSSKKPSD 85
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Csa1G025180 vs. NCBI nr
Match: gi|297745780|emb|CBI15836.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 59/88 (67.05%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQ---DFVA-GDNSDDNSNEFDSSDSSSCSKVS 60
           MCPLR ILIFLSATLAGFFVLRNLKSQPQ   D  A GD  D++ ++     S   S + 
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKSSKVLSAIG 92

Query: 61  SGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           SGFWT VDMASGRYLWRHL  SS KPSD
Sbjct: 93  SGFWTCVDMASGRYLWRHLV-SSSKPSD 119

The following BLAST results are available for this feature:

BLAST of Csa1G025180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV42_CUCSA	4.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1	[more]
I3T9P9_LOTJA	2.9e-21	63.04	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0A0LVB2_CUCSA	3.8e-21	65.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1	[more]
D7SJL0_VITVI	1.1e-20	67.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=...	[more]
W9SAE2_9ROSA	1.4e-20	60.64	Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1	[more]

BLAST of Csa1G025180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58375.1	2.9e-17	55.17	Methyltransferase-related protein	[more]
AT5G18150.1	3.4e-13	46.67	Methyltransferase-related protein	[more]
AT5G14602.1	3.7e-12	46.67	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Csa1G025180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208790\|gb\|KGN63886.1\|	6.1e-41	100.00	hypothetical protein Csa_1G025180 [Cucumis sativus]	[more]
gi\|659107022\|ref\|XP_008453499.1\|	2.8e-38	94.05	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]
gi\|388522359\|gb\|AFK49241.1\|	4.1e-21	63.04	unknown [Lotus japonicus]	[more]
gi\|700210759\|gb\|KGN65855.1\|	5.4e-21	65.12	hypothetical protein Csa_1G533620 [Cucumis sativus]	[more]
gi\|297745780\|emb\|CBI15836.3\|	1.6e-20	67.05	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092557	cucumber EST collection version 3.0	transcribed_cluster
CU093223	cucumber EST collection version 3.0	transcribed_cluster
CU106388	cucumber EST collection version 3.0	transcribed_cluster
CU132233	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G025180.1	Csa1G025180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU092557	CU092557	transcribed_cluster
CU106388	CU106388	transcribed_cluster
CU132233	CU132233	transcribed_cluster
CU093223	CU093223	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..84 score: 5.4
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 2..84 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G025180	MELO3C017370	Melon (DHL92) v3.5.1	cumeB055
Csa1G025180	MELO3C017370.2	Melon (DHL92) v3.6.1	cumedB047
Csa1G025180	Bhi02G000112	Wax gourd	cuwgoB077
Csa1G025180	CSPI01G04460	Wild cucumber (PI 183967)	cpicuB000
Csa1G025180	Cucsa.111670	Cucumber (Gy14) v1	cgycuB137
Csa1G025180	CsGy1G004360	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G025180	Cucurbita maxima (Rimu)	cmacuB050
Csa1G025180	Cucurbita maxima (Rimu)	cmacuB087
Csa1G025180	Cucurbita moschata (Rifu)	cmocuB076
Csa1G025180	Cucurbita moschata (Rifu)	cmocuB039
Csa1G025180	Watermelon (Charleston Gray)	cuwcgB082
Csa1G025180	Watermelon (97103) v1	cuwmB095
Csa1G025180	Cucurbita pepo (Zucchini)	cpecuB363
Csa1G025180	Cucurbita pepo (Zucchini)	cpecuB654
Csa1G025180	Bottle gourd (USVL1VR-Ls)	culsiB071
Csa1G025180	Silver-seed gourd	carcuB0622
Csa1G025180	Silver-seed gourd	carcuB0801
Csa1G025180	Watermelon (97103) v2	cuwmbB079