CsGy1G004360 (gene) Cucumber (Gy14) v2

NameCsGy1G004360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMethyltransferase-related protein
LocationChr1 : 2777613 .. 2778954 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCAAGAAAATATCAATGTTAGTTAACAAGTTTGTTCAATTTTAGTTTCTATTAACCTTTTTAGTATTAATAATAGTTGTCTATTATGGTCTTTAAATACCATTTTGCTAGTTTTGGAAAGACTCATTTTTCTTAATTTTAACCCTTATTCTTTTTTTTTTTTTTTCCAAGCAGCCATCCACCATTATAATATATTATAATAAAGTAGTCTACTTTAGTTTATTTTTGCATAAAAAATTGAGCTTGTGGCATTGTGGGTTATCACTAACCAAATCTTTAACCTTATCTGATTATTAATATTATTTGTCTTTGACATCTCATTCATTTAATTATTCATAAGAAATGATAGAAAATGAGTGGTTAGGTTAGGTGGAAAAACAAGCAAACTCCATATTCAATTCCCCAATTTTTCTATACCCAATTTTGACAATTCCTTCCCTTCCTTTGATTTTACCCTAAAAATTCTCTCTCATTATTCAGATCCAGAGGTTAGAGAAAGAAGTAGAAGAAGAACAAAAAAATTATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTTCTTCTAATTGTTCTTCACCGGAATCTTGCATTTTCTTTTTCTTTGTTTGTGTCTGAATGGAATTATTGTGGTGGTTTGTTTGAACAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGACTGACGATACGATGTCGGACTTGCGAGTGCTCCGACGGCCTAGGGCTCTCACCTTCTTCTGTTGTATGAATAATAATTATCTCTTTTTCCCTTCCCACCTTCGAGTAGATTTTGTAAAATTCCTCTTCTGCTTCATATCCAGCATCGTCGTTAACATCTAAATCTGTATAATGTAATCAAAATACGTGGATTGAACAACGTTTTGTGGATTCGATTTGTGATACAAAATTTTCTAACACTCGGCTCCCTGATTTCCATTAATCTTCGTTTCAACTTGGAGTTAGTTTTGAATAGGAATTGATTACCCTTTTACAAGAAAAAAAATACATACATTTGTATTATTGATTTCTCTATAAAAACCAATTAAAATATACAAAAAAATCATTTTGACAAATTCTCAAACTCTTTATTTTGATCTCAAATTAATTAAATTTAAATTATACACTTGAAATTGAAAATGGATTACACTTCAATGC

mRNA sequence

AAATCAAGAAAATATCAATGTTAGTTAACAAGTTTGTTCAATTTTAGTTTCTATTAACCTTTTTAGTATTAATAATAGTTGTCTATTATGGTCTTTAAATACCATTTTGCTAGTTTTGGAAAGACTCATTTTTCTTAATTTTAACCCTTATTCTTTTTTTTTTTTTTTCCAAGCAGCCATCCACCATTATAATATATTATAATAAAGTAGTCTACTTTAGTTTATTTTTGCATAAAAAATTGAGCTTGTGGCATTGTGGGTTATCACTAACCAAATCTTTAACCTTATCTGATTATTAATATTATTTGTCTTTGACATCTCATTCATTTAATTATTCATAAGAAATGATAGAAAATGAGTGGTTAGGTTAGGTGGAAAAACAAGCAAACTCCATATTCAATTCCCCAATTTTTCTATACCCAATTTTGACAATTCCTTCCCTTCCTTTGATTTTACCCTAAAAATTCTCTCTCATTATTCAGATCCAGAGGTTAGAGAAAGAAGTAGAAGAAGAACAAAAAAATTATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGACTGACGATACGATGTCGGACTTGCGAGTGCTCCGACGGCCTAGGGCTCTCACCTTCTTCTGTTGTATGAATAATAATTATCTCTTTTTCCCTTCCCACCTTCGAGTAGATTTTGTAAAATTCCTCTTCTGCTTCATATCCAGCATCGTCGTTAACATCTAAATCTGTATAATGTAATCAAAATACGTGGATTGAACAACGTTTTGTGGATTCGATTTGTGATACAAAATTTTCTAACACTCGGCTCCCTGATTTCCATTAATCTTCGTTTCAACTTGGAGTTAGTTTTGAATAGGAATTGATTACCCTTTTACAAGAAAAAAAATACATACATTTGTATTATTGATTTCTCTATAAAAACCAATTAAAATATACAAAAAAATCATTTTGACAAATTCTCAAACTCTTTATTTTGATCTCAAATTAATTAAATTTAAATTATACACTTGAAATTGAAAATGGATTACACTTCAATGC

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGACTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD
BLAST of CsGy1G004360 vs. NCBI nr
Match: KGN63886.1 (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 8.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

BLAST of CsGy1G004360 vs. NCBI nr
Match: XP_008453499.1 (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDD+S E DSSDS+SCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          T+VDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TVVDMASGRYLWRHLFPSSKKPSD 84

BLAST of CsGy1G004360 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 62/86 (72.09%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNS--NEFDSSDSSSCSKVSSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNSD +S               + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSDAHSXXXXXXXXXXXXXXAMQSG 60

Query: 61 FWTLVDMASGRYLWRHLFPSSKKPSD 85
          FWT+VDMASGRYLWRHLFPSS+K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSQKRSD 86

BLAST of CsGy1G004360 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 7.2e-22
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNS--NEFDSSDSSSCSKVSSG 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A +NSD +S               + SG
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSXXXXXXXXXXXXXXAMQSG 127

Query: 61  FWTLVDMASGRYLWRHLFPSSKKPSD 85
           FWT+VDMASGRYLWRHLFPSS+K SD
Sbjct: 128 FWTVVDMASGRYLWRHLFPSSQKRSD 153

BLAST of CsGy1G004360 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 60/94 (63.83%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDN----------SNEFDSSDSS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+ +                    
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHXXXXXXXXXXXXXXXXXXXX 60

Query: 61 SCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
              + SGFWT+VDMASGRYLWRHL PSSKKPS+
Sbjct: 61 XXXAMQSGFWTVVDMASGRYLWRHLMPSSKKPSN 94

BLAST of CsGy1G004360 vs. TAIR10
Match: AT5G58375.1 (Methyltransferase-related protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-15
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKV----S 60
          MCPLR ILIFLSATLAGFFVL+ L S   D +  D+S  ++   D    S  SKV     
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPL--DDSFTDAEHADDDSVSGFSKVGMAMK 60

Query: 61 SGFWTLVDMASGRYLWRHLFPSSKKPS 84
          SGFWT VDMASGRYLW +L  ++K+ S
Sbjct: 61 SGFWTCVDMASGRYLWNNLCSNAKRSS 85

BLAST of CsGy1G004360 vs. TAIR10
Match: AT5G18150.1 (Methyltransferase-related protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCP+RF+L+F SA LAG+F  + + S P+      +S D  NE    + +   K+ +GFW
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPE-----FDSPDELNE--KQELNLKKKMENGFW 60

Query: 61 TLVDMASGRYLWRHL 76
            VDMASGRYLWR+L
Sbjct: 61 VFVDMASGRYLWRNL 68

BLAST of CsGy1G004360 vs. TAIR10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-10
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRF+L+F SA LAG+   R + S P+ F + +     + E    D     K+ +G W
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKEKQGLDFK--RKMDNGLW 60

Query: 61 TLVDMASGRYLWRHL 76
          T VDMASGRYLWR+L
Sbjct: 61 TFVDMASGRYLWRNL 72

BLAST of CsGy1G004360 vs. TrEMBL
Match: tr|A0A0A0LV42|A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

BLAST of CsGy1G004360 vs. TrEMBL
Match: tr|A0A1S3BWD8|A0A1S3BWD8_CUCME (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDD+S E DSSDS+SCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          T+VDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TVVDMASGRYLWRHLFPSSKKPSD 84

BLAST of CsGy1G004360 vs. TrEMBL
Match: tr|A0A0A0LVB2|A0A0A0LVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60

Query: 61 TLVDMASGRYLWRHLF--PSSKKPSD 85
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82

BLAST of CsGy1G004360 vs. TrEMBL
Match: tr|D7SJL0|D7SJL0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07850 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 59/88 (67.05%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQ---DFVA-GDNSDDNSNEFDSSDSSSCSKVS 60
           MCPLR ILIFLSATLAGFFVLRNLKSQPQ   D  A GD  D++ ++     S   S + 
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKSSKVLSAIG 92

Query: 61  SGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           SGFWT VDMASGRYLWRHL  SS KPSD
Sbjct: 93  SGFWTCVDMASGRYLWRHLV-SSSKPSD 119

BLAST of CsGy1G004360 vs. TrEMBL
Match: tr|W9SAE2|W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-18
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQ-DFVAGDNSDDNSNEFD---------SSDSS 60
          MCPLR ILIFLSATLAGFFVLRNLKSQP+  F +GD + +N +E +         S  S 
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 SCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           CS + SGFWT VDMASGRYLWRHL  S+ K S+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN63886.18.4e-39100.00hypothetical protein Csa_1G025180 [Cucumis sativus][more]
XP_008453499.13.9e-3694.05PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo][more]
XP_023525661.12.5e-2272.09uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo][more]
XP_022997733.17.2e-2270.93uncharacterized protein LOC111492605 [Cucurbita maxima][more]
XP_023519406.11.0e-2063.83uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G58375.12.1e-1555.17Methyltransferase-related protein[more]
AT5G18150.12.4e-1146.67Methyltransferase-related protein[more]
AT5G14602.13.4e-1046.67FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LV42|A0A0A0LV42_CUCSA5.6e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1[more]
tr|A0A1S3BWD8|A0A1S3BWD8_CUCME2.6e-3694.05uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=... [more]
tr|A0A0A0LVB2|A0A0A0LVB2_CUCSA4.9e-1965.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533620 PE=4 SV=1[more]
tr|D7SJL0|D7SJL0_VITVI1.4e-1867.05Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g07850 PE=4 SV=... [more]
tr|W9SAE2|W9SAE2_9ROSA1.9e-1860.64Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010690 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G004360.1CsGy1G004360.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..54
NoneNo IPR availablePANTHERPTHR34132FAMILY NOT NAMEDcoord: 1..81