Lsi06G012700 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G012700
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMethyltransferase-related protein, putative
Locationchr06 : 23284425 .. 23285197 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTCTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGACGATAACTCCAAGGATTTGGATTCCAATTCGTCGTCGTTCTCTAAGGTTCTTGTAATTCTTTTTCATCAGAATCTTGCATTTCCTTTTTGCTTTTCTTTGTTTATGTCTGAATGGAGCGATTGTGGCATGTTTGAATAGGTGTGTTTGGCTATGAAATCGGGGTTCTGGATGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGAAGGCTTCCGATTAATGACACTGCGAGTGTTTCGGGTTAGGGCTCATGTTCTTCGCTTGTATATGTGGGTGGACCGTGGATGAATAATATCTCTTTTTCTCTTTCCCTTTCCCCTTCTCTTCGAGTAGATTTTGTAAAACTCCTCTTCTTCCTTCCGGTCGAGTGTCATCGTTAACATATCTAAGCCTGTAACAGAAATACTAAAGTGTTCAGAAATGATTAATCGTAAATGCTTCTTATTTCAATTGGGATTTTGAGTTTTGATAATATCCTTAAACGAAAAAAAAAGAAAAAATGAGTTTAAAAATACTCTTGAACTGTGCTATAAAAATACTCTTAAAAGTTCAAAAAATGTTCTGCACTCTATTTGTCATTGTAAAAAGAATTAGTACTCTTTAACTTCCACATATATATATATATATATATATATATAT

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTCTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGACGATAACTCCAAGGATTTGGATTCCAATTCGTCGTCGTTCTCTAAGGTTCTTGTGTGTTTGGCTATGAAATCGGGGTTCTGGATGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGAAGGCTTCCGATTAATGACACTGCGAGTGTTTCGGGTTAGGGCTCATGTTCTTCGCTTGTATATGTGGGTGGACCGTGGATGAATAATATCTCTTTTTCTCTTTCCCTTTCCCCTTCTCTTCGAGTAGATTTTGTAAAACTCCTCTTCTTCCTTCCGGTCGAGTGTCATCGTTAACATATCTAAGCCTGTAACAGAAATACTAAAGTGTTCAGAAATGATTAATCGTAAATGCTTCTTATTTCAATTGGGATTTTGAGTTTTGATAATATCCTTAAACGAAAAAAAAAGAAAAAATGAGTTTAAAAATACTCTTGAACTGTGCTATAAAAATACTCTTAAAAGTTCAAAAAATGTTCTGCACTCTATTTGTCATTGTAAAAAGAATTAGTACTCTTTAACTTCCACATATATATATATATATATATATATATAT

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTCTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGACGATAACTCCAAGGATTTGGATTCCAATTCGTCGTCGTTCTCTAAGGTTCTTGTGTGTTTGGCTATGAAATCGGGGTTCTGGATGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGAAGGCTTCCGATTAA

Protein sequence

MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMKSGFWMAVDMASGRYLWRHLVPSSKKASD
Homology
[Close]
BLAST of Lsi06G012700 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKS-PQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAM 60
          MCPLRFILIFLSATLAGFF+LRNLKS PQDF AGDNSDDNS + DS+ SS      C  +
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSS-----CSKV 60

Query: 61 KSGFWMAVDMASGRYLWRHLVPSSKKASD 89
           SGFW  VDMASGRYLWRHL PSSKK SD
Sbjct: 61 SSGFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Lsi06G012700 vs. TrEMBL
Match: W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-19
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQD--FEAGDNSDDN------SKDLDSNSSSFSK 60
          MCPLR ILIFLSATLAGFF+LRNLKS  +  F +GD + +N      +K  +S +S FSK
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 VLVCLAMKSGFWMAVDMASGRYLWRHLVPSSKKASD 89
          V  C AM+SGFW  VDMASGRYLWRHLV S+ K S+
Sbjct: 61 V--CSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]
BLAST of Lsi06G012700 vs. TrEMBL
Match: I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-19
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKS---PQDFEAGDNSDDNSKDLDSNSSSF---SKVL 60
          MCPLRFILIFLSATLAGFF+LRNL+S   P D +  D  +  S D  +NSSS    SK  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSD-SANSSSITATSKSK 60

Query: 61 VCLAMKSGFWMAVDMASGRYLWRHLVPSSKKAS 88
          V +A++SGFW  VDMASGRYLWR LVPSS K S
Sbjct: 61 VRVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]
BLAST of Lsi06G012700 vs. TrEMBL
Match: R0F1L6_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10028567mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1 

Query: 1   MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMK 60
           MCPLR ILIFLSATLAGFF+L+ L S  D    D+  D ++  D ++S FSKV   +AMK
Sbjct: 44  MCPLRLILIFLSATLAGFFVLKKLNSTSDDPLDDSFTDEAEPADDSASGFSKV--GMAMK 103

Query: 61  SGFWMAVDMASGRYLWRHLVPSSKKAS 88
           SGFW  VDMASGRYLW H+   SK++S
Sbjct: 104 SGFWTCVDMASGRYLWNHICSDSKRSS 128

[Close]
BLAST of Lsi06G012700 vs. TrEMBL
Match: A0A067E3Z4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGD--NSDDNSKDLDSNSSSFSKVLVCLA 60
          MCPLR ILIFLSATLAGFF++RNLKSPQ   + D     D+S D   N S  SKV   LA
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVR--LA 60

Query: 61 MKSGFWMAVDMASGRYLWRHLVPSSKKA 87
          ++SGFW  VDMASG+YLWRHL  SSK++
Sbjct: 61 LESGFWTFVDMASGKYLWRHLGSSSKRS 86

[Close]
BLAST of Lsi06G012700 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-18
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMK 60
          MCPLR ILIFLSATLAGFF+L+ L S  D    D+  D     D + S FSKV   +AMK
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKV--GMAMK 60

Query: 61 SGFWMAVDMASGRYLWRHLVPSSKKAS 88
          SGFW  VDMASGRYLW +L  ++K++S
Sbjct: 61 SGFWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]
BLAST of Lsi06G012700 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMK 60
          MCP+RF+L+F SA LAG+F  + + S  +F++ D  ++  ++L+              M+
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNE-KQELNLKKK----------ME 60

Query: 61 SGFWMAVDMASGRYLWRHLVPSSKKA 87
          +GFW+ VDMASGRYLWR+L    +K+
Sbjct: 61 NGFWVFVDMASGRYLWRNLKEMREKS 75

[Close]
BLAST of Lsi06G012700 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMK 60
          MCPLRF+L+F SA LAG+   R + S  +  + +     +K+       F +      M 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKE--KQGLDFKR-----KMD 60

Query: 61 SGFWMAVDMASGRYLWRHL 80
          +G W  VDMASGRYLWR+L
Sbjct: 61 NGLWTFVDMASGRYLWRNL 72

[Close]
BLAST of Lsi06G012700 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKS-PQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAM 60
          MCPLRFILIFLSATLAGFF+LRNLKS PQDF AGDNSDD+SK+LDS+ S+      C  +
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTS-----CSKV 60

Query: 61 KSGFWMAVDMASGRYLWRHLVPSSKKASD 89
           SGFW  VDMASGRYLWRHL PSSKK SD
Sbjct: 61 SSGFWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Lsi06G012700 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKS-PQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAM 60
          MCPLRFILIFLSATLAGFF+LRNLKS PQDF AGDNSDDNS + DS+ SS      C  +
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSS-----CSKV 60

Query: 61 KSGFWMAVDMASGRYLWRHLVPSSKKASD 89
           SGFW  VDMASGRYLWRHL PSSKK SD
Sbjct: 61 SSGFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Lsi06G012700 vs. NCBI nr
Match: gi|470117183|ref|XP_004294741.1| (PREDICTED: uncharacterized protein LOC101299652 [Fragaria vesca subsp. vesca])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQDFEAGDNSDDNSKDLDSNSSSFSKVLVCLAMK 60
          MCPLRFIL+FLSATLAGFFLLRNLKS Q   A  + D +  +  ++ + FSK  VC AM+
Sbjct: 1  MCPLRFILVFLSATLAGFFLLRNLKSEQPQLAPTDDDTHLDNPKNSPNRFSK--VCSAME 60

Query: 61 SGFWMAVDMASGRYLWRHLVPSSKKASD 89
          SGFW  VDMASGRYLWRHLV SS K++D
Sbjct: 61 SGFWTFVDMASGRYLWRHLVTSSAKSTD 86

[Close]
BLAST of Lsi06G012700 vs. NCBI nr
Match: gi|703145305|ref|XP_010108497.1| (hypothetical protein L484_010690 [Morus notabilis])

HSP 1 Score: 101.7 bits (252), Expect = 6.8e-19
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKSPQD--FEAGDNSDDN------SKDLDSNSSSFSK 60
          MCPLR ILIFLSATLAGFF+LRNLKS  +  F +GD + +N      +K  +S +S FSK
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 VLVCLAMKSGFWMAVDMASGRYLWRHLVPSSKKASD 89
          V  C AM+SGFW  VDMASGRYLWRHLV S+ K S+
Sbjct: 61 V--CSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]
BLAST of Lsi06G012700 vs. NCBI nr
Match: gi|388522359|gb|AFK49241.1| (unknown [Lotus japonicus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFLLRNLKS---PQDFEAGDNSDDNSKDLDSNSSSF---SKVL 60
          MCPLRFILIFLSATLAGFF+LRNL+S   P D +  D  +  S D  +NSSS    SK  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSD-SANSSSITATSKSK 60

Query: 61 VCLAMKSGFWMAVDMASGRYLWRHLVPSSKKAS 88
          V +A++SGFW  VDMASGRYLWR LVPSS K S
Sbjct: 61 VRVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

The following BLAST results are available for this feature:
BLAST of Lsi06G012700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G012700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV42_CUCSA4.0e-2675.28Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1[more]
W9SAE2_9ROSA4.8e-1961.46Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1[more]
I3T9P9_LOTJA8.1e-1963.44Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
R0F1L6_9BRAS1.2e-1758.62Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10028567mg PE=4... [more]
A0A067E3Z4_CITSI3.4e-1762.50Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1[more]
BLAST of Lsi06G012700 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58375.11.2e-1857.47 Methyltransferase-related protein[more]
AT5G18150.12.5e-1139.53 Methyltransferase-related protein[more]
AT5G14602.12.6e-0840.51 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Lsi06G012700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107022|ref|XP_008453499.1|3.4e-2675.28PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo][more]
gi|700208790|gb|KGN63886.1|5.8e-2675.28hypothetical protein Csa_1G025180 [Cucumis sativus][more]
gi|470117183|ref|XP_004294741.1|1.1e-1964.77PREDICTED: uncharacterized protein LOC101299652 [Fragaria vesca subsp. vesca][more]
gi|703145305|ref|XP_010108497.1|6.8e-1961.46hypothetical protein L484_010690 [Morus notabilis][more]
gi|388522359|gb|AFK49241.1|1.2e-1863.44unknown [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G012700.1Lsi06G012700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34132FAMILY NOT NAMEDcoord: 2..86
score: 9.0
NoneNo IPR availablePANTHERPTHR34132:SF2SUBFAMILY NOT NAMEDcoord: 2..86
score: 9.0