ClCG06G014220 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G014220
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Methyltransferase-related protein LENGTH=85
Location	CG_Chr06 : 27661311 .. 27662099 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAAGCAAGGTTGCTTTCATGGCATCTAGATATTCAAAATTCCCCAATTTTCTAAAGCCAATTTTGACAATTCCTTCATTACACTCCCTTGATTTACCCTAATAATCATTTCTTCCCTTCCCACAATTTTCTCTCTTAATTCAGATCCAGAGGTTAGAGAAGAAGGAGGAAGGAAGGGCGTTGAAAAAAACAAGAAAAAAAAAAAAATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTTTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGAAGATAACTCCAAGGATTCGGATTCCAATTCGTCGTTGTTCTCTCAGGTTCTTGTGATTCTTCTTCATCGGAATCTTGCATTTCCTTTTTTTGCTTTTCTTTGTTTGTGTATGAATGGAACGATTGTGGTATGTTTGAACAGGCGTCTTCGGCTATGAAATCGGTGTTCTGGACGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGGAGGCTTCCGATTAACGACACTATACGATACGATGTCGGACGTCCGAGTGTTTCGGGTTAGAGCTCAGGTTCTTCGCTTGTATATGTGGGTGGATGAATAATATATCTCTTTTTCCCTTTCGCTTTCCCCTTCCCTTCGAGTAGATTTTGTAAAACTCATTTCTTCCAAGTTAACATCTAAATCTGTAAAAGAAATACAAAGTGTTCAGAAATGCTCAAGCGTAAATGATTCTGATTTCA

mRNA sequence

AAGCAAGCAAGGTTGCTTTCATGGCATCTAGATATTCAAAATTCCCCAATTTTCTAAAGCCAATTTTGACAATTCCTTCATTACACTCCCTTGATTTACCCTAATAATCATTTCTTCCCTTCCCACAATTTTCTCTCTTAATTCAGATCCAGAGGTTAGAGAAGAAGGAGGAAGGAAGGGCGTTGAAAAAAACAAGAAAAAAAAAAAAATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTTTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGAAGATAACTCCAAGGATTCGGATTCCAATTCGTCGTTGTTCTCTCAGGCGTCTTCGGCTATGAAATCGGTGTTCTGGACGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGGAGGCTTCCGATTAACGACACTATACGATACGATGTCGGACGTCCGAGTGTTTCGGGTTAGAGCTCAGGTTCTTCGCTTGTATATGTGGGTGGATGAATAATATATCTCTTTTTCCCTTTCGCTTTCCCCTTCCCTTCGAGTAGATTTTGTAAAACTCATTTCTTCCAAGTTAACATCTAAATCTGTAAAAGAAATACAAAGTGTTCAGAAATGCTCAAGCGTAAATGATTCTGATTTCA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTCCTTTTCCGCAACCTCAAATCGCCTCAAGATTTCGAGGCCGGCGATAATTCCGAAGATAACTCCAAGGATTCGGATTCCAATTCGTCGTTGTTCTCTCAGGCGTCTTCGGCTATGAAATCGGTGTTCTGGACGGCGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGGTTCCGTCATCGAAGGAGGCTTCCGATTAA

Protein sequence

MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKSVFWTAVDMASGRYLWRHLVPSSKEASD

Homology

[Close]

BLAST of ClCG06G014220 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-25
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKS-PQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKS 60
          MCPLRFILIFLSATLAGFF+ RNLKS PQDF AGDNS+DNS + DS+ S    + S + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDS---SSCSKVSS 60

Query: 61 VFWTAVDMASGRYLWRHLVPSSKEASD 87
           FWT VDMASGRYLWRHL PSSK+ SD
Sbjct: 61 GFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of ClCG06G014220 vs. TrEMBL
Match: W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.4e-20
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQD--FEAGDNSEDNSKDSD------SNSSLFSQ 60
          MCPLR ILIFLSATLAGFF+ RNLKS  +  F +GD + +N  +S+      S +S FS+
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 ASSAMKSVFWTAVDMASGRYLWRHLVPSSKEASD 87
            SAM+S FWT VDMASGRYLWRHLV S+ + S+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]

BLAST of ClCG06G014220 vs. TrEMBL
Match: A0A067LEU7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17330 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQ--DFEAGDNSEDNSKDSD----SNSSLFSQAS 60
          MCPLR ILIFLSATLAGFF+ RNLKS    D   GDNS+ +S  S     +N+SL S+  
Sbjct: 1  MCPLRVILIFLSATLAGFFVVRNLKSRPLTDDGGGDNSQSSSSSSSGSSINNASLNSKVR 60

Query: 61 SAMKSVFWTAVDMASGRYLWRHLVPSSKEAS 86
          SA++S FWT VDMASGRYLW+HLVPSS   S
Sbjct: 61 SAIESGFWTFVDMASGRYLWKHLVPSSSSPS 91

[Close]

BLAST of ClCG06G014220 vs. TrEMBL
Match: I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-19
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKS---PQDFEAGDNSEDNSKDSDSNSSLFSQASS-- 60
          MCPLRFILIFLSATLAGFF+ RNL+S   P D +  D     S DS ++SS+ + + S  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSDSANSSSITATSKSKV 60

Query: 61 --AMKSVFWTAVDMASGRYLWRHLVPSSKEAS 86
            A++S FWT VDMASGRYLWR LVPSS + S
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of ClCG06G014220 vs. TrEMBL
Match: R0F1L6_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10028567mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1   MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKSV 60
           MCPLR ILIFLSATLAGFF+ + L S  D    D+  D ++ +D ++S FS+   AMKS 
Sbjct: 44  MCPLRLILIFLSATLAGFFVLKKLNSTSDDPLDDSFTDEAEPADDSASGFSKVGMAMKSG 103

Query: 61  FWTAVDMASGRYLWRHLVPSSKEAS 86
           FWT VDMASGRYLW H+   SK +S
Sbjct: 104 FWTCVDMASGRYLWNHICSDSKRSS 128

[Close]

BLAST of ClCG06G014220 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-19
Identity = 47/85 (55.29%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKSV 60
          MCPLR ILIFLSATLAGFF+ + L S  D    D+  D     D + S FS+   AMKS 
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTAVDMASGRYLWRHLVPSSKEAS 86
          FWT VDMASGRYLW +L  ++K +S
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of ClCG06G014220 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.4e-12
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKSV 60
          MCP+RF+L+F SA LAG+F ++ + S  +F++ D         + N          M++ 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPD---------ELNEKQELNLKKKMENG 60

Query: 61 FWTAVDMASGRYLWRHL 78
          FW  VDMASGRYLWR+L
Sbjct: 61 FWVFVDMASGRYLWRNL 68

[Close]

BLAST of ClCG06G014220 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKSV 60
          MCPLRF+L+F SA LAG+  +R + S  +  + +  +  +K+              M + 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQG-----LDFKRKMDNG 60

Query: 61 FWTAVDMASGRYLWRHL 78
           WT VDMASGRYLWR+L
Sbjct: 61 LWTFVDMASGRYLWRNL 72

[Close]

BLAST of ClCG06G014220 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-25
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKS-PQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKS 60
          MCPLRFILIFLSATLAGFF+ RNLKS PQDF AGDNS+DNS + DS+ S    + S + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDS---SSCSKVSS 60

Query: 61 VFWTAVDMASGRYLWRHLVPSSKEASD 87
           FWT VDMASGRYLWRHL PSSK+ SD
Sbjct: 61 GFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of ClCG06G014220 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-25
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKS-PQDFEAGDNSEDNSKDSDSNSSLFSQASSAMKS 60
          MCPLRFILIFLSATLAGFF+ RNLKS PQDF AGDNS+D+SK+ DS+ S    + S + S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDST---SCSKVSS 60

Query: 61 VFWTAVDMASGRYLWRHLVPSSKEASD 87
           FWT VDMASGRYLWRHL PSSK+ SD
Sbjct: 61 GFWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of ClCG06G014220 vs. NCBI nr
Match: gi|470117183|ref|XP_004294741.1| (PREDICTED: uncharacterized protein LOC101299652 [Fragaria vesca subsp. vesca])

HSP 1 Score: 104.8 bits (260), Expect = 7.9e-20
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQDFEAGDNSEDNSKDSDSNS-SLFSQASSAMKS 60
          MCPLRFIL+FLSATLAGFFL RNLKS Q  +     +D   D+  NS + FS+  SAM+S
Sbjct: 1  MCPLRFILVFLSATLAGFFLLRNLKSEQP-QLAPTDDDTHLDNPKNSPNRFSKVCSAMES 60

Query: 61 VFWTAVDMASGRYLWRHLVPSSKEASD 87
           FWT VDMASGRYLWRHLV SS +++D
Sbjct: 61 GFWTFVDMASGRYLWRHLVTSSAKSTD 86

[Close]

BLAST of ClCG06G014220 vs. NCBI nr
Match: gi|703145305|ref|XP_010108497.1| (hypothetical protein L484_010690 [Morus notabilis])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQD--FEAGDNSEDNSKDSD------SNSSLFSQ 60
          MCPLR ILIFLSATLAGFF+ RNLKS  +  F +GD + +N  +S+      S +S FS+
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 ASSAMKSVFWTAVDMASGRYLWRHLVPSSKEASD 87
            SAM+S FWT VDMASGRYLWRHLV S+ + S+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]

BLAST of ClCG06G014220 vs. NCBI nr
Match: gi|802540798|ref|XP_012078343.1| (PREDICTED: uncharacterized protein LOC105639013 [Jatropha curcas])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFLFRNLKSPQ--DFEAGDNSEDNSKDSD----SNSSLFSQAS 60
          MCPLR ILIFLSATLAGFF+ RNLKS    D   GDNS+ +S  S     +N+SL S+  
Sbjct: 1  MCPLRVILIFLSATLAGFFVVRNLKSRPLTDDGGGDNSQSSSSSSSGSSINNASLNSKVR 60

Query: 61 SAMKSVFWTAVDMASGRYLWRHLVPSSKEAS 86
          SA++S FWT VDMASGRYLW+HLVPSS   S
Sbjct: 61 SAIESGFWTFVDMASGRYLWKHLVPSSSSPS 91

The following BLAST results are available for this feature:

BLAST of ClCG06G014220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV42_CUCSA	3.3e-25	72.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1	[more]
W9SAE2_9ROSA	9.4e-20	58.51	Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1	[more]
A0A067LEU7_JATCU	1.2e-19	62.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17330 PE=4 SV=1	[more]
I3T9P9_LOTJA	4.7e-19	58.70	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
R0F1L6_9BRAS	2.3e-18	56.47	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10028567mg PE=4...	[more]

BLAST of ClCG06G014220 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58375.1	1.4e-19	55.29	Methyltransferase-related protein	[more]
AT5G18150.1	6.4e-12	41.56	Methyltransferase-related protein	[more]
AT5G14602.1	2.1e-10	40.26	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG06G014220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208790\|gb\|KGN63886.1\|	4.8e-25	72.41	hypothetical protein Csa_1G025180 [Cucumis sativus]	[more]
gi\|659107022\|ref\|XP_008453499.1\|	4.8e-25	72.41	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]
gi\|470117183\|ref\|XP_004294741.1\|	7.9e-20	63.22	PREDICTED: uncharacterized protein LOC101299652 [Fragaria vesca subsp. vesca]	[more]
gi\|703145305\|ref\|XP_010108497.1\|	1.3e-19	58.51	hypothetical protein L484_010690 [Morus notabilis]	[more]
gi\|802540798\|ref\|XP_012078343.1\|	1.8e-19	62.64	PREDICTED: uncharacterized protein LOC105639013 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G014220.1	ClCG06G014220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..86 score: 3.0
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 2..86 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G014220	Cla018913	Watermelon (97103) v1	wcgwmB344
ClCG06G014220	Cla97C06G123680	Watermelon (97103) v2	wcgwmbB273
ClCG06G014220	Bhi02G000112	Wax gourd	wcgwgoB548
ClCG06G014220	CSPI01G04460	Wild cucumber (PI 183967)	cpiwcgB084
ClCG06G014220	Cucsa.111670	Cucumber (Gy14) v1	cgywcgB165
ClCG06G014220	Lsi06G012700	Bottle gourd (USVL1VR-Ls)	lsiwcgB372
ClCG06G014220	CsGy1G004360	Cucumber (Gy14) v2	cgybwcgB079
ClCG06G014220	MELO3C017370.2	Melon (DHL92) v3.6.1	medwcgB246

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G014220	Cucurbita pepo (Zucchini)	cpewcgB335
ClCG06G014220	Cucurbita pepo (Zucchini)	cpewcgB616
ClCG06G014220	Silver-seed gourd	carwcgB0581
ClCG06G014220	Silver-seed gourd	carwcgB0764
ClCG06G014220	Cucumber (Chinese Long) v3	cucwcgB089
ClCG06G014220	Cucurbita maxima (Rimu)	cmawcgB071
ClCG06G014220	Cucurbita maxima (Rimu)	cmawcgB135
ClCG06G014220	Cucurbita moschata (Rifu)	cmowcgB064
ClCG06G014220	Cucurbita moschata (Rifu)	cmowcgB119
ClCG06G014220	Cucumber (Chinese Long) v2	cuwcgB082
ClCG06G014220	Melon (DHL92) v3.5.1	mewcgB254