CSPI01G04460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G04460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Methyltransferase-related protein, putative
Location	Chr1 : 2796009 .. 2796948 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTATAATATATTATAATAAAGTAGTCTACTTTAGTTTATTTTTGCATAAAAAATTGAGCTTGTGGCATTGTGGGTTATCACTAACCAAATCTTTAACCTTATCTGATTATTAATATTATTTGTCTTTGACATCTCATTCATTTAATTATTCATAAGAAATGATAGAAAATGAGTGGTTAGGTTAGGTGGAAAAACAAGCAAACTCCATATTCAATTCCCCAATTTTTCTATACCCAATTTTGACAATTCCTTCCCTTCCTTTGATTTTACCCTAAAAATTCTCTCTCATTATTCAGATCCAGAGGTTAGAGAAAGAAGTAGAAGAAGAACAAAAAAATTATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTTCTTCTAATTGTTCTTCACCGGAATCTTGCATTTTCTTTTTCTTTGTTTGTGTCTGAATGGAATTATTGTGGTGGTTTGTTTGAACAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGACGATACGATGTCGGACTTGCGAGTGCTCCGACGGCCTAGGGCTCTCACCTTCTTCTGTTGTATGAATAATAATTATCTCTTTTTCCCTTCCCACCTTCGAGTAGATTTGTAAAATTCCTCTTCTGCTTCATATCCAGCATCGTCGTTAACATCTAAATCTGTATAATGTAATCAAAATACGTGGATTGAACAACGTTTTGTGGATTCGATTTGTGATACAAAATTTTCTAACACTCGGCTCCCTGATTTCCAT

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACGCTTGCCGGATTCTTCGTTCTCCGCAACCTCAAATCTCAGCCTCAAGATTTCGTGGCCGGCGATAATTCAGACGATAACTCCAACGAATTCGATTCCTCCGATTCGTCCTCCTGCTCGAAGGTGTCTTCGGGGTTCTGGACGTTGGTGGATATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTTCCATCGTCGAAGAAGCCTTCCGATTGA

Homology

[Close]

BLAST of CSPI01G04460 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of CSPI01G04460 vs. TrEMBL
Match: I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 58/92 (63.04%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVS---- 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP       N + N+   DS++SSS +  S    
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSDSANSSSITATSKSKV 60

Query: 61 -----SGFWTLVDMASGRYLWRHLFPSSKKPS 84
               SGFWTLVDMASGRYLWR L PSS K S
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of CSPI01G04460 vs. TrEMBL
Match: A0A0A0LVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60

Query: 61 TLVDMASGRYLWRHLF--PSSKKPSD 85
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of CSPI01G04460 vs. TrEMBL
Match: D7SJL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.5e-19
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQ---DFVAGDNSDDNSNEFDSSDSSS--CSKV 60
           MCPLR ILIFLSATLAGFFVLRNLKSQPQ   D  A  + DDN +  DS+  SS   S +
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDN-DPHDSTPKSSKVLSAI 92

Query: 61  SSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
            SGFWT VDMASGRYLWRHL  SS KPSD
Sbjct: 93  GSGFWTCVDMASGRYLWRHLV-SSSKPSD 119

[Close]

BLAST of CSPI01G04460 vs. TrEMBL
Match: W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQ-DFVAGDNSDDNSNEFD---------SSDSS 60
          MCPLR ILIFLSATLAGFFVLRNLKSQP+  F +GD + +N +E +         S  S 
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 SCSKVSSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
           CS + SGFWT VDMASGRYLWRHL  S+ K S+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

[Close]

BLAST of CSPI01G04460 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKV----S 60
          MCPLR ILIFLSATLAGFFVL+ L S   D +  D+S  ++   D    S  SKV     
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPL--DDSFTDAEHADDDSVSGFSKVGMAMK 60

Query: 61 SGFWTLVDMASGRYLWRHLFPSSKKPS 84
          SGFWT VDMASGRYLW +L  ++K+ S
Sbjct: 61 SGFWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of CSPI01G04460 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCP+RF+L+F SA LAG+F  + + S P+      +S D  NE    + +   K+ +GFW
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEF-----DSPDELNE--KQELNLKKKMENGFW 60

Query: 61 TLVDMASGRYLWRHL 76
            VDMASGRYLWR+L
Sbjct: 61 VFVDMASGRYLWRNL 68

[Close]

BLAST of CSPI01G04460 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRF+L+F SA LAG+   R + S P+ F + +     + E    D     K+ +G W
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKEKQGLDFK--RKMDNGLW 60

Query: 61 TLVDMASGRYLWRHL 76
          T VDMASGRYLWR+L
Sbjct: 61 TFVDMASGRYLWRNL 72

[Close]

BLAST of CSPI01G04460 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          TLVDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of CSPI01G04460 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDD+S E DSSDS+SCSKVSSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TLVDMASGRYLWRHLFPSSKKPSD 85
          T+VDMASGRYLWRHLFPSSKKPSD
Sbjct: 61 TVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of CSPI01G04460 vs. NCBI nr
Match: gi|388522359|gb|AFK49241.1| (unknown [Lotus japonicus])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 58/92 (63.04%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVS---- 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP       N + N+   DS++SSS +  S    
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSDSANSSSITATSKSKV 60

Query: 61 -----SGFWTLVDMASGRYLWRHLFPSSKKPS 84
               SGFWTLVDMASGRYLWR L PSS K S
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of CSPI01G04460 vs. NCBI nr
Match: gi|700210759|gb|KGN65855.1| (hypothetical protein Csa_1G533620 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60

Query: 61 TLVDMASGRYLWRHLF--PSSKKPSD 85
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of CSPI01G04460 vs. NCBI nr
Match: gi|297745780|emb|CBI15836.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQ---DFVAGDNSDDNSNEFDSSDSSS--CSKV 60
           MCPLR ILIFLSATLAGFFVLRNLKSQPQ   D  A  + DDN +  DS+  SS   S +
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDN-DPHDSTPKSSKVLSAI 92

Query: 61  SSGFWTLVDMASGRYLWRHLFPSSKKPSD 85
            SGFWT VDMASGRYLWRHL  SS KPSD
Sbjct: 93  GSGFWTCVDMASGRYLWRHLV-SSSKPSD 119

The following BLAST results are available for this feature:

BLAST of CSPI01G04460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G04460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV42_CUCSA	1.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1	[more]
I3T9P9_LOTJA	1.2e-19	63.04	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0A0LVB2_CUCSA	1.6e-19	65.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1	[more]
D7SJL0_VITVI	3.5e-19	69.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=...	[more]
W9SAE2_9ROSA	6.0e-19	60.64	Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1	[more]

BLAST of CSPI01G04460 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58375.1	1.2e-15	55.17	Methyltransferase-related protein	[more]
AT5G18150.1	1.8e-11	46.67	Methyltransferase-related protein	[more]
AT5G14602.1	2.7e-10	46.67	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CSPI01G04460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208790\|gb\|KGN63886.1\|	2.6e-39	100.00	hypothetical protein Csa_1G025180 [Cucumis sativus]	[more]
gi\|659107022\|ref\|XP_008453499.1\|	1.2e-36	94.05	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]
gi\|388522359\|gb\|AFK49241.1\|	1.7e-19	63.04	unknown [Lotus japonicus]	[more]
gi\|700210759\|gb\|KGN65855.1\|	2.3e-19	65.12	hypothetical protein Csa_1G533620 [Cucumis sativus]	[more]
gi\|297745780\|emb\|CBI15836.3\|	5.1e-19	69.66	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04460.1	CSPI01G04460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..84 score: 5.4
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 2..84 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G04460	Cla018913	Watermelon (97103) v1	cpiwmB100
CSPI01G04460	Csa1G025180	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G04460	MELO3C017370	Melon (DHL92) v3.5.1	cpimeB056
CSPI01G04460	ClCG06G014220	Watermelon (Charleston Gray)	cpiwcgB084
CSPI01G04460	MELO3C017370.2	Melon (DHL92) v3.6.1	cpimedB050
CSPI01G04460	Bhi02G000112	Wax gourd	cpiwgoB079
CSPI01G04460	Cucsa.111670	Cucumber (Gy14) v1	cgycpiB137
CSPI01G04460	CsGy1G004360	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G04460	Cucurbita pepo (Zucchini)	cpecpiB363
CSPI01G04460	Cucurbita pepo (Zucchini)	cpecpiB657
CSPI01G04460	Bottle gourd (USVL1VR-Ls)	cpilsiB071
CSPI01G04460	Silver-seed gourd	carcpiB0628
CSPI01G04460	Silver-seed gourd	carcpiB0821
CSPI01G04460	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G04460	Watermelon (97103) v2	cpiwmbB080
CSPI01G04460	Cucurbita maxima (Rimu)	cmacpiB051
CSPI01G04460	Cucurbita maxima (Rimu)	cmacpiB086
CSPI01G04460	Cucurbita moschata (Rifu)	cmocpiB042
CSPI01G04460	Cucurbita moschata (Rifu)	cmocpiB079