Csa1G011480 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G011480
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	HNH endonuclease family protein, expressed; contains IPR003615 (HNH nuclease)
Location	Chr1 : 1609234 .. 1611558 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGGTGAGTCGGCCCGCTGAAAGAAGAGTCGAGGGGCAATGATCGGCGTAATTTAAGAACGGAATGATCCAATGTCTTCAGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGTAGTATGATTCTTTAGTCGACGATTGGTTTCTGATTCCGATTTGAGAAATTTTGCTTCTGCTGTTGAGTTCAGGGTTTAGTTTGGATTGTGATGAAATTTTTCGGCGACTGTTTGCAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGGTACTTCTTCATCCTGCTCCAATTCTTTCTTTTGGTATTCATATTCTTCTATTTTTCATATCCATTTATTGGCTGGTAATCTATGAGCTGCCGATACCAAGTTACATAAAATCAGATTTACATATATCTCACTTTCTAGTTTCCGTACTGCCTATAATTTTTCGCAAATTCTTTCTGCCGTACTATTCAATGCAAGAACTTCTCAAATTCATGCTTGTTTAAGCTACGAGTAAACCATCCGTTTCGAATACCAAAGTAGTTCACCCTACTGTTGTTTTGTTATTGCAATTTCTCCCAGTAAAATATAACTTTTGGCATTGATCTCTTTTTCTTAGCTGCCCCATATGGCCAAATGTTCATCAGCTTTTACGTAATCATATGGTTTGTTGCTCAAAATCTGTAGTTTCTGTAAAGTTGCTCAGCCATACCGTGAGACAATTGATTGGCTGTTGTGCTTTTATTTAACTTTTGTTGGTACTTGATGACAATTTCGGGGAAAGTGATCTAGAAACATCATTACAGTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGTTTTAGAAAGATCTGTTGTCCTGTCCCATATTAGCTGTCATTTCTGGTGGTAGTTTCTGATTAAAAATTTAAAACAAACGAGTTCTTGTATTTTAGGTCATCTGAAACTTTAAGTGATGAATCTCCGTAGGCTGCTGTCTAGAACTTCGAAGTATAAACTCACCTCCTTGAGGTTATGAATTCTAATATCTTATGAAAATTTCATTGAATGATGTAGTATAATTAAATTGCTGTGCATAAGCAGACAAGGGCACTCTCTGTGTATAAGATCGTCACCTCTTAGTTCATTGTGCTTTTCCCTTTGAAACCTGCTTTCATGCATCTCAAGAAAGTCACTTTGTTACCAACCCACCAAAGAAACTCCTTTGACATTTTTTTTTTTGTATAGAAACTATTTTCTCATGTAAGGGCGTACAAAAAAGAAAAAAAAACAAGCCTGCACCTACTGAATAGAATGTGCATAAAGAGTAATTACAAAATGTGTTTGAAATGGAAGGCTAAACATCAATTGGATATCTCTCCTCCACCTCTCCCTAACCACAGTTATTTCTCTACCTCATCAATCTCACATTTAATCGCACACCCAACATCTCAAAGCAAGCAATCATTCTCACCAAAAGACTGATGGAGAACTCGCTCCCCTATTGAACCACTAACGCTTGACCATCTCATGGTAGTCTATATTATAGAATCTGATTAAAACAGTTGATGCGTCAAGGTTTTTTCGCGTCTATCTCACATCCATATATGATGTATTTGGGTTTCATAATTCCTTGCAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAACAACAAAGAAGACTTGAAACTAAAGCATGTTTGCCCCATCTATAGTTTAATACGATTGATAAACATCATTTTAAGATTACATCAATTAGAATTGTGTGGACCTCCATTACTTGATTAGATCAATATGAATCAACATCGACCATCATTTTTTATTTATTA

mRNA sequence

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAA

Coding sequence (CDS)

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAA

Protein sequence

MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGSL*

Homology

[Close]

BLAST of Csa1G011480 vs. TrEMBL
Match: A0A0A0LUK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 3.8e-123
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60
           MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF
Sbjct: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60

Query: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120
           FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES
Sbjct: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120

Query: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180
           TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR
Sbjct: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180

Query: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 211
           CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL
Sbjct: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 210

[Close]

BLAST of Csa1G011480 vs. TrEMBL
Match: M5WAX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.5e-82
Identity = 143/174 (82.18%), Postives = 159/174 (91.38%), Query Frame = 1


Query: 32  ATSSSPSPTRSRGGQRD--SGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 91
           ++ SS SP RSRGG  +  S  G G++RPRFFD+KAK++CWAKADVVPGRHPERWRKDAA
Sbjct: 4   SSPSSSSPHRSRGGGDNGTSSKGKGEDRPRFFDSKAKSNCWAKADVVPGRHPERWRKDAA 63

Query: 92  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 151
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGEST DNCQILQTRVNRFKS+KD +D ++LKG
Sbjct: 64  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTEDNCQILQTRVNRFKSDKDQIDKTQLKG 123

Query: 152 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 204
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTV+E+LGQYKSKD+ A CKLP
Sbjct: 124 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQYKSKDKTAACKLP 177

[Close]

BLAST of Csa1G011480 vs. TrEMBL
Match: A0A0D2TTQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.9e-80
Identity = 139/174 (79.89%), Postives = 156/174 (89.66%), Query Frame = 1


Query: 34  SSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVV 93
           SSSPSP RSR       S   +ERPRFFD+KAK+ CWA A+ VPGRHPERWRKDAAGN+V
Sbjct: 2   SSSPSPRRSRS------SNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNIV 61

Query: 94  CKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCD 153
           CKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQTRVNRFKSNK+D+DT+ LKGYSC+
Sbjct: 62  CKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSCE 121

Query: 154 VKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           V+FTDKELDIIEMAVYGDVIRPGNQCRCRT++E+LGQYKSKD LA CKLP ++E
Sbjct: 122 VQFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKE 169

[Close]

BLAST of Csa1G011480 vs. TrEMBL
Match: A0A0B0MHS4_GOSAR (Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79
Identity = 138/174 (79.31%), Postives = 156/174 (89.66%), Query Frame = 1


Query: 34  SSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVV 93
           SSSPSP RSR       S   +ERPRFFD+KAK+ CWA A+ VPGRHPERWRKDAAGN+V
Sbjct: 2   SSSPSPRRSRS------SNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNIV 61

Query: 94  CKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCD 153
           CKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQTRVNRFKSNK+D+DT+ LKGYSC+
Sbjct: 62  CKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSCE 121

Query: 154 VKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           V+FT+KELDIIEMAVYGDVIRPGNQCRCRT++E+LGQYKSKD LA CKLP ++E
Sbjct: 122 VQFTEKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKE 169

[Close]

BLAST of Csa1G011480 vs. TrEMBL
Match: V4TQC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 136/176 (77.27%), Postives = 157/176 (89.20%), Query Frame = 1


Query: 32  ATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGN 91
           ++SSS  P RSR     + + S +ERPR+FD KAK+ CWAKA+ VPGRHPERWRKDAAGN
Sbjct: 7   SSSSSSLPNRSRSS---NSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGN 66

Query: 92  VVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYS 151
           +VCKRFCNC GCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+K+ VD ++LKG+S
Sbjct: 67  IVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFS 126

Query: 152 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           CDVKFTDKELDIIEMAVYGDVIRPGNQCRC+TV+E+LGQ+KSKDR+A CKLPY+ E
Sbjct: 127 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRMAACKLPYDGE 179

[Close]

BLAST of Csa1G011480 vs. TAIR10
Match: AT1G18680.1 (AT1G18680.1 HNH endonuclease domain-containing protein)

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-71
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 1


Query: 28  TPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKD 87
           T     ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD
Sbjct: 10  TNSTTAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKD 69

Query: 88  AAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSEL 147
            AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQILQTRVNRFKS +++VD + L
Sbjct: 70  VAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTL 129

Query: 148 KGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 204
           K YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 130 KSYSCGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of Csa1G011480 vs. TAIR10
Match: AT3G47490.1 (AT3G47490.1 HNH endonuclease)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-35
Identity = 75/176 (42.61%), Postives = 94/176 (53.41%), Query Frame = 1


Query: 27  PTPMEATSSSPSPTRSRGGQRDS------------------GSGSGDERP--RFFDAKAK 86
           P+      SS SP R+ G  R                    GSG GD  P  R F    K
Sbjct: 57  PSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGSGYGDPNPEPRSFPYSVK 116

Query: 87  ASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQ 146
             CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVPYSKGG+ST +NCQ
Sbjct: 117 QQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQ 176

Query: 147 ILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR 183
           +LQ +VNR K NK D+  SEL   S   +   +++D+IE+  YG+V R      CR
Sbjct: 177 VLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCR 232

[Close]

BLAST of Csa1G011480 vs. NCBI nr
Match: gi|700208600|gb|KGN63696.1| (hypothetical protein Csa_1G011480 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 5.5e-123
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60
           MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF
Sbjct: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60

Query: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120
           FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES
Sbjct: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120

Query: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180
           TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR
Sbjct: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180

Query: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 211
           CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL
Sbjct: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 210

[Close]

BLAST of Csa1G011480 vs. NCBI nr
Match: gi|449440818|ref|XP_004138181.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 9.7e-104
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 209
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 180

Query: 210 L 211
           L
Sbjct: 181 L 181

[Close]

BLAST of Csa1G011480 vs. NCBI nr
Match: gi|778655999|ref|XP_011660190.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 5.3e-102
Identity = 181/185 (97.84%), Postives = 181/185 (97.84%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 209
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 180

Query: 210 EEGSL 211
           EEGSL
Sbjct: 181 EEGSL 185

[Close]

BLAST of Csa1G011480 vs. NCBI nr
Match: gi|659105999|ref|XP_008453224.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 2.0e-101
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED 178

[Close]

BLAST of Csa1G011480 vs. NCBI nr
Match: gi|659105995|ref|XP_008453223.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 176/182 (96.70%), Postives = 178/182 (97.80%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 208
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180

The following BLAST results are available for this feature:

BLAST of Csa1G011480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK3_CUCSA	3.8e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1	[more]
M5WAX4_PRUPE	9.5e-82	82.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1	[more]
A0A0D2TTQ0_GOSRA	8.9e-80	79.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1	[more]
A0A0B0MHS4_GOSAR	2.6e-79	79.31	Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1	[more]
V4TQC1_9ROSI	1.7e-78	77.27	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1	[more]

BLAST of Csa1G011480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18680.1	3.0e-71	67.61	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	1.6e-35	42.61	HNH endonuclease	[more]

BLAST of Csa1G011480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208600\|gb\|KGN63696.1\|	5.5e-123	100.00	hypothetical protein Csa_1G011480 [Cucumis sativus]	[more]
gi\|449440818\|ref\|XP_004138181.1\|	9.7e-104	100.00	PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus]	[more]
gi\|778655999\|ref\|XP_011660190.1\|	5.3e-102	97.84	PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus]	[more]
gi\|659105999\|ref\|XP_008453224.1\|	2.0e-101	98.88	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]	[more]
gi\|659105995\|ref\|XP_008453223.1\|	1.1e-99	96.70	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002711	HNH
IPR003615	HNH_nuc

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004519	endonuclease activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096939	cucumber EST collection version 3.0	transcribed_cluster
CU129732	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G011480.1	Csa1G011480.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU096939	CU096939	transcribed_cluster
CU129732	CU129732	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 94..128 score: 5.
IPR003615	HNH nuclease	SMART	SM00507	HNH_5	coord: 80..134 score: 0.
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 56..207 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G011480	Cla019088	Watermelon (97103) v1	cuwmB094
Csa1G011480	MELO3C017197	Melon (DHL92) v3.5.1	cumeB054
Csa1G011480	ClCG06G015940	Watermelon (Charleston Gray)	cuwcgB081
Csa1G011480	Lsi06G014430	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G011480	MELO3C017197.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G011480	Cla97C06G125520	Watermelon (97103) v2	cuwmbB078
Csa1G011480	Bhi02G000198	Wax gourd	cuwgoB095
Csa1G011480	CSPI01G02550	Wild cucumber (PI 183967)	cpicuB000
Csa1G011480	Cucsa.197940	Cucumber (Gy14) v1	cgycuB299
Csa1G011480	CmaCh11G001220	Cucurbita maxima (Rimu)	cmacuB097
Csa1G011480	CmoCh11G001900	Cucurbita moschata (Rifu)	cmocuB076
Csa1G011480	CsGy1G002580	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G011480	Watermelon (97103) v2	cuwmbB055
Csa1G011480	Watermelon (97103) v2	cuwmbB060
Csa1G011480	Wax gourd	cuwgoB054
Csa1G011480	Wax gourd	cuwgoB070
Csa1G011480	Cucumber (Chinese Long) v2	cucuB000
Csa1G011480	Cucumber (Chinese Long) v2	cucuB029
Csa1G011480	Cucumber (Gy14) v1	cgycuB138
Csa1G011480	Cucumber (Gy14) v1	cgycuB404
Csa1G011480	Cucurbita maxima (Rimu)	cmacuB048
Csa1G011480	Cucurbita maxima (Rimu)	cmacuB221
Csa1G011480	Cucurbita maxima (Rimu)	cmacuB429
Csa1G011480	Cucurbita maxima (Rimu)	cmacuB685
Csa1G011480	Cucurbita moschata (Rifu)	cmocuB037
Csa1G011480	Cucurbita moschata (Rifu)	cmocuB210
Csa1G011480	Cucurbita moschata (Rifu)	cmocuB418
Csa1G011480	Cucurbita moschata (Rifu)	cmocuB673
Csa1G011480	Melon (DHL92) v3.5.1	cumeB009
Csa1G011480	Melon (DHL92) v3.5.1	cumeB030
Csa1G011480	Watermelon (Charleston Gray)	cuwcgB058
Csa1G011480	Watermelon (Charleston Gray)	cuwcgB062
Csa1G011480	Watermelon (97103) v1	cuwmB037
Csa1G011480	Watermelon (97103) v1	cuwmB063
Csa1G011480	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G011480	Cucurbita pepo (Zucchini)	cpecuB509
Csa1G011480	Cucurbita pepo (Zucchini)	cpecuB536
Csa1G011480	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G011480	Bottle gourd (USVL1VR-Ls)	culsiB025
Csa1G011480	Bottle gourd (USVL1VR-Ls)	culsiB056
Csa1G011480	Cucumber (Gy14) v2	cgybcuB005
Csa1G011480	Melon (DHL92) v3.6.1	cumedB004
Csa1G011480	Melon (DHL92) v3.6.1	cumedB026
Csa1G011480	Silver-seed gourd	carcuB0053
Csa1G011480	Silver-seed gourd	carcuB0416
Csa1G011480	Silver-seed gourd	carcuB0493