CU096939 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU096939
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 1609234 .. 1610976 (+)
Sequence length	409

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTAATAAATAAAAATAGATGGTCGATGTTGATTCATATTGATCTAATCAAGTAATGGAGGTCCACACAATTCTAATTGATGTAATCTTAAAATGATGTTTATCAATCGTATTAAACTATAGATGGGGCAAACATGCTTTAGTTTCAAGTCTTCTTTGTTGTTACAAAGAACCTTCTTCATTATATGGCAATTTGCAGGGGGCCAAACGGTCTTTAGATTTATATTGCCCAAGCACTTCAGAAACTGTTCTACAACGACATTGGTTCCCTGGCCGGATTACATCTCCGTAAACAGCCATTTCAATTATGTCAAGCTCCTTATCAGTAAACTTGACATCACACGAATAGCCTTTCAACTCAGACGTATCAACATCGTCTTTGTTCGATTTGAATCTGTTTACTCTCGTC

Library


Library category	ESTs
fruit (8DPP) library	3
gynoecious flower library	11
hermaphrodite flower library	10

Homology

[Close]

BLAST of CU096939 vs. TrEMBL
Match: A0A0A0LUK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = -2


Query: 166 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 225
           TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG
Sbjct: 130 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 189

Query: 226 QYKSKDRLAPCKLPYNEEGSL 285
           QYKSKDRLAPCKLPYNEEGSL
Sbjct: 190 QYKSKDRLAPCKLPYNEEGSL 210

Query: 286  345
           
Sbjct: 250  210

Query: 346  405
           
Sbjct: 310  210

Query: 406  409
           
Sbjct: 370  210

[Close]

BLAST of CU096939 vs. TrEMBL
Match: D7SI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06660 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 65/78 (83.33%), Postives = 75/78 (96.15%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 234
           TRVNRFKS+KD+VD ++L+GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTV+E+LG
Sbjct: 88  TRVNRFKSDKDNVDKTQLQGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLG 147

Query: 235 QYKSKDRLAPCKLPYNEE 294
           QYK KDR+A CKLP+N+E
Sbjct: 148 QYKPKDRMAACKLPFNDE 165

Query: 295  354
           
Sbjct: 208  165

Query: 355  409
           
Sbjct: 268  165

[Close]

BLAST of CU096939 vs. TrEMBL
Match: A0A0V0H5P5_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 234
           TRVNR KSNKD++D S LK YSCD+KFTDKELD+IEMAVYGDV+RPG QCRCRTV+EVLG
Sbjct: 105 TRVNRLKSNKDEIDISRLKSYSCDIKFTDKELDVIEMAVYGDVLRPGKQCRCRTVAEVLG 164

Query: 235 QYKSKDRLAPCKLPYNEE 294
           QYKSKDR APCKLPY +E
Sbjct: 165 QYKSKDRAAPCKLPYADE 182

Query: 295  354
           
Sbjct: 225  182

Query: 355  409
           
Sbjct: 285  182

[Close]

BLAST of CU096939 vs. TrEMBL
Match: M1B7E4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015000 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-31
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 234
           TRVNR KSNKD++D S LK YSCD+KFTDKELD+IEMAVYGDV+RPG QCRCRTV+EVLG
Sbjct: 87  TRVNRLKSNKDEIDISRLKSYSCDIKFTDKELDVIEMAVYGDVLRPGKQCRCRTVAEVLG 146

Query: 235 QYKSKDRLAPCKLPYNEE 294
           QYKSKDR APCKLPY  E
Sbjct: 147 QYKSKDRAAPCKLPYANE 164

Query: 295  354
           
Sbjct: 207  164

Query: 355  409
           
Sbjct: 267  164

[Close]

BLAST of CU096939 vs. TrEMBL
Match: A0A0D2TTQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-31
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 234
           TRVNRFKSNK+D+DT+ LKGYSC+V+FTDKELDIIEMAVYGDVIRPGNQCRCRT++E+LG
Sbjct: 92  TRVNRFKSNKEDLDTTRLKGYSCEVQFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLG 151

Query: 235 QYKSKDRLAPCKLPYNEE 294
           QYKSKD LA CKLP ++E
Sbjct: 152 QYKSKDNLAACKLPLDKE 169

Query: 295  354
           
Sbjct: 212  169

Query: 355  409
           
Sbjct: 272  169

[Close]

BLAST of CU096939 vs. NCBI nr
Match: gi|449440818|ref|XP_004138181.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = -2


Query: 166 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 225
           TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG
Sbjct: 101 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 160

Query: 226 QYKSKDRLAPCKLPYNEEGSL 285
           QYKSKDRLAPCKLPYNEEGSL
Sbjct: 161 QYKSKDRLAPCKLPYNEEGSL 181

Query: 286  345
           
Sbjct: 221  181

Query: 346  405
           
Sbjct: 281  181

Query: 406  409
           
Sbjct: 341  181

[Close]

BLAST of CU096939 vs. NCBI nr
Match: gi|700208600|gb|KGN63696.1| (hypothetical protein Csa_1G011480 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = -2


Query: 166 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 225
           TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG
Sbjct: 130 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 189

Query: 226 QYKSKDRLAPCKLPYNEEGSL 285
           QYKSKDRLAPCKLPYNEEGSL
Sbjct: 190 QYKSKDRLAPCKLPYNEEGSL 210

Query: 286  345
           
Sbjct: 250  210

Query: 346  405
           
Sbjct: 310  210

Query: 406  409
           
Sbjct: 370  210

[Close]

BLAST of CU096939 vs. NCBI nr
Match: gi|778655999|ref|XP_011660190.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 6.0e-38
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = -2


Query: 166 TRVNRFKSNKDDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVS 225
           TRVNRFKSNKDDVDTSELKGYSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVS
Sbjct: 101 TRVNRFKSNKDDVDTSELKGYSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVS 160

Query: 226 EVLGQYKSKDRLAPCKLPYNEEGSL 285
           EVLGQYKSKDRLAPCKLPYNEEGSL
Sbjct: 161 EVLGQYKSKDRLAPCKLPYNEEGSL 185

Query: 286  345
           
Sbjct: 221  185

Query: 346  405
           
Sbjct: 281  185

Query: 406  409
           
Sbjct: 341  185

[Close]

BLAST of CU096939 vs. NCBI nr
Match: gi|659105999|ref|XP_008453224.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-37
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLG 234
           TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LG
Sbjct: 101 TRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLG 160

Query: 235 QYKSKDRLAPCKLPYNEE 294
           QYKSKDRLAPCKLPYNE+
Sbjct: 161 QYKSKDRLAPCKLPYNED 178

Query: 295  354
           
Sbjct: 221  178

Query: 355  409
           
Sbjct: 281  178

[Close]

BLAST of CU096939 vs. NCBI nr
Match: gi|659105995|ref|XP_008453223.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-35
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = -2


Query: 175 TRVNRFKSNKDDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVS 234
           TRVNRFKSNKDDVDTSELKGYSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVS
Sbjct: 101 TRVNRFKSNKDDVDTSELKGYSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVS 160

Query: 235 EVLGQYKSKDRLAPCKLPYNEE 294
           E+LGQYKSKDRLAPCKLPYNE+
Sbjct: 161 EMLGQYKSKDRLAPCKLPYNED 182

Query: 295  354
           
Sbjct: 221  182

Query: 355  409
           
Sbjct: 281  182

The following BLAST results are available for this feature:

BLAST of CU096939 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK3_CUCSA	1.7e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1	[more]
D7SI72_VITVI	1.3e-31	83.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06660 PE=4 SV=...	[more]
A0A0V0H5P5_SOLCH	2.9e-31	82.05	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]
M1B7E4_SOLTU	4.9e-31	82.05	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015000 PE=4 SV=1	[more]
A0A0D2TTQ0_GOSRA	6.4e-31	82.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1	[more]

BLAST of CU096939 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440818\|ref\|XP_004138181.1\|	1.1e-39	100.00	PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus]	[more]
gi\|700208600\|gb\|KGN63696.1\|	1.1e-39	100.00	hypothetical protein Csa_1G011480 [Cucumis sativus]	[more]
gi\|778655999\|ref\|XP_011660190.1\|	6.0e-38	95.29	PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus]	[more]
gi\|659105999\|ref\|XP_008453224.1\|	3.0e-37	97.44	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]	[more]
gi\|659105995\|ref\|XP_008453223.1\|	1.6e-35	92.68	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G011480	Csa1G011480	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KNG8V	FKNP3UI02KNG8V	EST
FKNP3UI02M11YX	FKNP3UI02M11YX	EST
FKNP3UI02NPUQI	FKNP3UI02NPUQI	EST
G0005782	G0005782	EST
G0011621	G0011621	EST
G0035892	G0035892	EST
G0072131	G0072131	EST
G0074193	G0074193	EST
G0079424	G0079424	EST
G0085000	G0085000	EST
G0095848	G0095848	EST
G0119750	G0119750	EST
G0126805	G0126805	EST
G0166018	G0166018	EST
H0030926	H0030926	EST
H0031491	H0031491	EST
H0033978	H0033978	EST
H0039230	H0039230	EST
H0059582	H0059582	EST
H0084862	H0084862	EST
H0094647	H0094647	EST
H0106056	H0106056	EST
H0134960	H0134960	EST
H0151024	H0151024	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 2..79 score: 6.8