Lsi06G014430 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G014430
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Endonuclease/ nucleic acid binding protein
Location	chr06 : 24963033 .. 24965771 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAACAAGTAGGAAATGATCTCACGTCTTCAGTTTCTTCCCTTTCTGTCTTCTACAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGTAATATGATTTCCATCTCTGACACCTTTAGTCGACGAATGGTTTCTGATTCCTATTCGAGAATTTTTTATTCTGCTGTTGCGTTTTCGTAGTGGATGACTGGATATATTTAAATTTAGGGCTTAGCTCTGATTGTGATGAAATTCGATCGGCGATTGTTTGCAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGGTATTTTTTCATCTGCTCCAGTTCTTTCTTTTGGAATGATCATGCTCTACTGTTTAGTTTTATAACACTCGTTAGGGCTCGAGAGTCGAGACTATAAAATGGTAAACCTATGTTTGATGTCTGAATTTTCATATCCCAAATCATGGGCTGCTAATCTATGACCTGTCCATACCAAGTTACATAAAATTAAACTTTTAAAATGATCTCACCTTCTATACTGCCTATTAATTTTCATAAATCCTTTCTGCCGTACTATTCAAACGCAAGAACTTATCAAATTCGCGCTTGTTAAAGCTACGAGTACAACATCCGCTTGGAATACCCAAGTAGTTAACCTTTCTGTTGTTTTGTTCCTTCTTGCAATCTCTCCCAGTAGAATATAGCTTTTAGCATCAATTTCTTTTTCTCTTAGCTGCCCCATATGGCCATATGTTCATCAGCTTTTACATAATCATATGGTTTTTTGCTCAAAATTTGTAATTTCTGTAAATTAAAAACTCAGCCATTCCATGAGAATTGATTGGCTTGACTGTTGTGCTGTTGTTTAACTTTTGACAGTACTTGGTGACATTTTTGGGGGGAGTGGTCTAGAAACATCATTACAGTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGTTTTAGAAATATCTGTTGTCCTGTTCCATATTAGCTGTCATTGCTGGTGGTAGTTTGTGATTAAAAATTTAAAACAAACGAATACTTGTATTTTAGGTCATCTGAAACACAAATGAAGAATCTCCATAGATTGCTGTCTTTAACTTCGAACTATAAATTCACCTCCTTAATGTTATGAATTCAAATCATGCTGTGTACCCACGTACAATATCAAATATCTTATGAAATTTTAATCATTAAATGATGTAGAGAAATTAAATTGTTATGCATAAGTGGAATAGAGCACGCTCTGTGCATCTTGATCAATACCTAAAACTGGAGAAAGTCCTCTGGGTAGGAATTCTTCAAGGAACACATGGATTACCTCTTAGTTCATTGTCAATTTCCATATTCGGGTTTCAATGAGACATTGAGATCAACTTGCATGTATCTCAACGGATCTCACAAGATAATTACTTTATCTTACTACACGAGAAAAAAAAATGAAGGAATACAAGGGTGTACAGAAAAACCAAGCCCACAAAGCCCCCTTTAAAGAGAAAGGGGTCAAATTAAGAAAAATGTTGCCTAAAGAGTAATTACAAAAGAACTTCGAAAGCGAAGTTCAAAGGGAGACAAGAAACTTCACCAAGGACCAAACATCACTAGAGTCCCTCTCCACCCCTTTAAACACTACTATTTCTCTCTCCATAAATCTCATAACAAAGCACACACCCAACATTCTAAAGAAAGCAGTCATTCTCACTAAAAGAGGCGGATGGAGGAGGTACTCTCCGATCAAACTACTGACACTGCTCTTGGATCTCAAGTGGATGTCCACCATGAATTGAACTCATTGTGCTTAACCTTTCAAACGTGCCCTAGTATCCACTAGACCATCTCATGGTAGTTAAGGTTTTGAAGTCGATGAAAACAATTGACTCTCCCTTCGAGGTTCTTTTCCCCACTCTGTCTTACATCTATATATTTATGATGTATTTGGAGTGCATATTTCGTTGCAGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAACAACAAAGAAGACTTAAAACTAAAGCATGTTTGCCCCATTTGGTATAGATCTAGAATTTAATACGCTCGATACGAATACTGTTAGATTATATCAATTAGAAACTGTGGACCTCCATTACTTGGTTAGATCAATATCAATGAACATCGACCATCATTTCTTTATGTATTATTAATACAATGTTGTGTGTTCATTAAATAGTTGAAAAGAAAGTTTAAAGACACAAAATTCAAATATGTGGCAAACAGATTTTGGACTTTAAAAATAAGATCTACTAGACACTTTCTAAAAATTTACAAAA

mRNA sequence

AAATTAACAAGTAGGAAATGATCTCACGTCTTCAGTTTCTTCCCTTTCTGTCTTCTACAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAACAACAAAGAAGACTTAAAACTAAAGCATGTTTGCCCCATTTGGTATAGATCTAGAATTTAATACGCTCGATACGAATACTGTTAGATTATATCAATTAGAAACTGTGGACCTCCATTACTTGGTTAGATCAATATCAATGAACATCGACCATCATTTCTTTATGTATTATTAATACAATGTTGTGTGTTCATTAAATAGTTGAAAAGAAAGTTTAAAGACACAAAATTCAAATATGTGGCAAACAGATTTTGGACTTTAAAAATAAGATCTACTAGACACTTTCTAAAAATTTACAAAA

Coding sequence (CDS)

ATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAA

Protein sequence

METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

Homology

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BLAST of Lsi06G014430 vs. TrEMBL
Match: A0A0A0LUK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.4e-97
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149

Query: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED 179
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Sbjct: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 207

[Close]

BLAST of Lsi06G014430 vs. TrEMBL
Match: M5WAX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.1e-81
Identity = 144/174 (82.76%), Postives = 158/174 (90.80%), Query Frame = 1


Query: 3   TTSSSPSPTRSRGGHRH--SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 62
           ++ SS SP RSRGG  +  S  G G++RPRFFD+KAK+ CWAKADVVPGRHPERWRKDAA
Sbjct: 4   SSPSSSSPHRSRGGGDNGTSSKGKGEDRPRFFDSKAKSNCWAKADVVPGRHPERWRKDAA 63

Query: 63  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 122
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGEST DNCQILQTRVNRFKSDK+ +D ++LKG
Sbjct: 64  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTEDNCQILQTRVNRFKSDKDQIDKTQLKG 123

Query: 123 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 175
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTV+EMLGQYKSKD+ A CKLP
Sbjct: 124 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQYKSKDKTAACKLP 177

[Close]

BLAST of Lsi06G014430 vs. TrEMBL
Match: V4TQC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-80
Identity = 139/178 (78.09%), Postives = 160/178 (89.89%), Query Frame = 1


Query: 3   TTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGN 62
           ++SSS  P RSR  + ++   S +ERPR+FD KAK++CWAKA+ VPGRHPERWRKDAAGN
Sbjct: 7   SSSSSSLPNRSRSSNSNN---SNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGN 66

Query: 63  VVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYS 122
           +VCKRFCNC GCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKSDK  VD ++LKG+S
Sbjct: 67  IVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFS 126

Query: 123 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 181
           CDVKFTDKELDIIEMAVYGDVIRPGNQCRC+TV+EMLGQ+KSKDR+A CKLPY+ +SL
Sbjct: 127 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRMAACKLPYDGESL 181

[Close]

BLAST of Lsi06G014430 vs. TrEMBL
Match: A0A067KHJ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11670 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 9.9e-80
Identity = 140/174 (80.46%), Postives = 153/174 (87.93%), Query Frame = 1


Query: 7   SPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCK 66
           S SP RSRGG     S  G+ERPRFFD  AK ICWAKAD+VPGRHPERWRKDAAGN+VCK
Sbjct: 2   SSSPHRSRGGT----SSGGEERPRFFDHNAKKICWAKADIVPGRHPERWRKDAAGNIVCK 61

Query: 67  RFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVK 126
           R CNC GCLCF+YDHIVP+SKGGESTADNCQILQTRVN FKSDK +VD ++L+GYSCD+K
Sbjct: 62  RLCNCHGCLCFQYDHIVPFSKGGESTADNCQILQTRVNSFKSDKEEVDKAQLRGYSCDLK 121

Query: 127 FTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 181
           FTDKELDIIEMAVYGDVIRPGNQCRCRTV+EMLGQ KSKDR A CKLPY ++SL
Sbjct: 122 FTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQQKSKDRAAACKLPYGDESL 171

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BLAST of Lsi06G014430 vs. TrEMBL
Match: A0A0D2TTQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.7e-79
Identity = 139/176 (78.98%), Postives = 157/176 (89.20%), Query Frame = 1


Query: 5   SSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVV 64
           SSSPSP RSR       S   +ERPRFFD+KAK+ CWA A+ VPGRHPERWRKDAAGN+V
Sbjct: 2   SSSPSPRRSRS------SNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNIV 61

Query: 65  CKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCD 124
           CKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQTRVNRFKS+K D+DT+ LKGYSC+
Sbjct: 62  CKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSCE 121

Query: 125 VKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 181
           V+FTDKELDIIEMAVYGDVIRPGNQCRCRT++EMLGQYKSKD LA CKLP +++S+
Sbjct: 122 VQFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKESI 171

[Close]

BLAST of Lsi06G014430 vs. TAIR10
Match: AT1G18680.1 (AT1G18680.1 HNH endonuclease domain-containing protein)

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-70
Identity = 119/172 (69.19%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 3   TTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGN 62
           T ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD AGN
Sbjct: 14  TAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGN 73

Query: 63  VVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYS 122
           +VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQILQTRVNRFKS + +VD + LK YS
Sbjct: 74  IVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYS 133

Query: 123 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 175
           C ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 134 CGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of Lsi06G014430 vs. TAIR10
Match: AT3G47490.1 (AT3G47490.1 HNH endonuclease)

HSP 1 Score: 144.4 bits (363), Expect = 6.6e-35
Identity = 64/134 (47.76%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 20  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 79
           SG G  +  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +Y
Sbjct: 99  SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDY 158

Query: 80  DHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAV 139
           DHIVPYSKGG+ST +NCQ+LQ +VNR K +K D+  SEL   S   +   +++D+IE+  
Sbjct: 159 DHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTA 218

Query: 140 YGDVIRPGNQCRCR 154
           YG+V R      CR
Sbjct: 219 YGNVQRAPTSSGCR 232

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BLAST of Lsi06G014430 vs. NCBI nr
Match: gi|659105999|ref|XP_008453224.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo])

HSP 1 Score: 369.8 bits (948), Expect = 2.7e-99
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 180
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL 180

[Close]

BLAST of Lsi06G014430 vs. NCBI nr
Match: gi|659105995|ref|XP_008453223.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 174/184 (94.57%), Postives = 176/184 (95.65%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 121 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180

[Close]

BLAST of Lsi06G014430 vs. NCBI nr
Match: gi|449440818|ref|XP_004138181.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED 179
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 178

[Close]

BLAST of Lsi06G014430 vs. NCBI nr
Match: gi|700208600|gb|KGN63696.1| (hypothetical protein Csa_1G011480 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 2.0e-97
Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149

Query: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED 179
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Sbjct: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 207

[Close]

BLAST of Lsi06G014430 vs. NCBI nr
Match: gi|778655999|ref|XP_011660190.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-95
Identity = 170/182 (93.41%), Postives = 174/182 (95.60%), Query Frame = 1


Query: 1   METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAA 60
           ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELKG 120
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKS+K+DVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 121 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 179
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 180

The following BLAST results are available for this feature:

BLAST of Lsi06G014430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G014430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK3_CUCSA	1.4e-97	95.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1	[more]
M5WAX4_PRUPE	3.1e-81	82.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1	[more]
V4TQC1_9ROSI	4.4e-80	78.09	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1	[more]
A0A067KHJ2_JATCU	9.9e-80	80.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11670 PE=4 SV=1	[more]
A0A0D2TTQ0_GOSRA	1.7e-79	78.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1	[more]

BLAST of Lsi06G014430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18680.1	1.7e-70	69.19	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	6.6e-35	47.76	HNH endonuclease	[more]

BLAST of Lsi06G014430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105999\|ref\|XP_008453224.1\|	2.7e-99	96.67	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]	[more]
gi\|659105995\|ref\|XP_008453223.1\|	1.5e-97	94.57	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]
gi\|449440818\|ref\|XP_004138181.1\|	2.0e-97	95.51	PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus]	[more]
gi\|700208600\|gb\|KGN63696.1\|	2.0e-97	95.51	hypothetical protein Csa_1G011480 [Cucumis sativus]	[more]
gi\|778655999\|ref\|XP_011660190.1\|	1.1e-95	93.41	PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004519	endonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003615	HNH_nuc
IPR002711	HNH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G014430.1	Lsi06G014430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 65..99 score: 4.
IPR003615	HNH nuclease	SMART	SM00507	HNH_5	coord: 51..105 score: 0.
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 27..179 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G014430	Csa1G011480	Cucumber (Chinese Long) v2	culsiB070
Lsi06G014430	CSPI01G02550	Wild cucumber (PI 183967)	cpilsiB070
Lsi06G014430	Cucsa.197940	Cucumber (Gy14) v1	cgylsiB342
Lsi06G014430	CmaCh11G001220	Cucurbita maxima (Rimu)	cmalsiB129
Lsi06G014430	CmoCh11G001900	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G014430	Cla019088	Watermelon (97103) v1	lsiwmB414
Lsi06G014430	MELO3C017197	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G014430	ClCG06G015940	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G014430	MELO3C017197.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G014430	Cla97C06G125520	Watermelon (97103) v2	lsiwmbB374
Lsi06G014430	Bhi02G000198	Wax gourd	lsiwgoB501
Lsi06G014430	CsGy1G002580	Cucumber (Gy14) v2	cgyblsiB067
Lsi06G014430	CsaV3_1G002610	Cucumber (Chinese Long) v3	cuclsiB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G014430	Bottle gourd (USVL1VR-Ls)	lsilsiB113
Lsi06G014430	Cucumber (Gy14) v1	cgylsiB157
Lsi06G014430	Cucurbita maxima (Rimu)	cmalsiB072
Lsi06G014430	Cucurbita maxima (Rimu)	cmalsiB218
Lsi06G014430	Cucurbita maxima (Rimu)	cmalsiB443
Lsi06G014430	Cucurbita moschata (Rifu)	cmolsiB058
Lsi06G014430	Cucurbita moschata (Rifu)	cmolsiB432
Lsi06G014430	Cucurbita pepo (Zucchini)	cpelsiB298
Lsi06G014430	Cucurbita pepo (Zucchini)	cpelsiB432
Lsi06G014430	Cucurbita pepo (Zucchini)	cpelsiB471
Lsi06G014430	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G014430	Wild cucumber (PI 183967)	cpilsiB072
Lsi06G014430	Cucumber (Chinese Long) v2	culsiB072
Lsi06G014430	Melon (DHL92) v3.5.1	lsimeB391
Lsi06G014430	Watermelon (Charleston Gray)	lsiwcgB366
Lsi06G014430	Watermelon (97103) v1	lsiwmB408
Lsi06G014430	Cucumber (Gy14) v2	cgyblsiB069
Lsi06G014430	Melon (DHL92) v3.6.1	lsimedB413
Lsi06G014430	Silver-seed gourd	carlsiB049
Lsi06G014430	Silver-seed gourd	carlsiB359
Lsi06G014430	Silver-seed gourd	carlsiB419
Lsi06G014430	Cucumber (Chinese Long) v3	cuclsiB083
Lsi06G014430	Watermelon (97103) v2	lsiwmbB368
Lsi06G014430	Wax gourd	lsiwgoB488