CmaCh11G001220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G001220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Endonuclease/ nucleic acid binding protein
Location	Cma_Chr11 : 651235 .. 653736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCTGGACGACATCCCGAGCGGTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGTAAATTTGATTTGCTTCTCTTCGCCTCTAGCCGGTTAATGGTTTCTGAGTTCGATATGGGAAATTTCGCTGTTGCTGTTGCTTTTCCGTTGTGGATTGCCGTAAATTTATGGCTTAGCTTTGGTTGTCATGAAATTCGCAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAGTCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACCGGTACTTTTTCATTCTGCCCCCATTCCCTGTCTATTGAAGTCCATGCTTTCTGTTTAGTCTTTTAACACTTGCTAGGGTTCGAGACTAAAAAATTGAACTTGCGTATGATGTCTGAATTTCCATATCTTAAAGATCCTGTTGCTAGTCCTTGAGCTACTCATACTAAGTTGAACGAAATCAAACTTGTGAAATCTCACTGTTATAGATCGTAAATCCAGATTAAACAATTTAGGTTTCCATAAACTATCCCTTTGTACTATTCCAAGTTAGAGCTTATCAAATTCATGCTTGTTAAAGCGACGAGTGAAACATCGGTTTGGAATAACTATTTAATTCACCTTTTTGTTGGTTTGGTCTTGATTTCTCTCCGGTTCGAATATAGCTACTATCATCAACTTACTTTTCTCCTAGCTGCCCCACATGTATAGCTATATAATTTTATCAGCTTTTACGGAATCATATGGTCGCTCAAAATTTGTAATTTCTATAAAGGCTATAATTTTATCGGATTTCATGGAATCATATGGTTGATCATATTTGTAATTTCTATAAAGTCTATATTTTTATCTGCTTTTACGGAATCATATGCTCGCTCAAAATTTGTAATTTCTATGAAGCATAAATTCGGCCGTCCCATGACACTATTGATTGGTTGTTTTGCTTTCCTTATCTTTTGACGGTACTTTGTGGCATTTCGGGGGAAGTGATCCGGAAACATCATTACATTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGCTTTAGCAATTGTATATGCTGTCCTGTTTCATATTAGCTATCATTGCTGATGTTAGTTTATGTTCAAACAAAAGAATGCTTGTACTTTTGGTCATTGAAACACAAATGAAGAACCTACATAGATTGCATTCCCCTTGTTGAAGTTATGAATTCAAATCATGCTGTGCACCCACCCAGAATATGAAATATCTTATGAACTTTTTGTAGAGATATTCATTGTTGTGCATATGTGGAATAGAGCAGGTTCTATGAATCTTGATCAATACCTAAAGCTGAAATAATCCATTCTGGGGAGGAATTTTTTGAGGACGACATGGATTTTACCTCTTAGTTCATTGTCCCTTTCCATATTCAACTTGGGAACTTGGATTCAATAAGACTAACATTCATGCATATCGAATAACCTTATGCGACACTCTCTTGATTTACTATATTTGCTTACCAGAAAAACTCGTTGAATGTGGAATTGACTACCATGAATCAAACTCATTTTCACTTGACCCTTATTCAATTACCACTAGGATGTCCCATGGTGATTAAGATTTTAGATTTCCCTAGAACAATTGATAACATCCAATATTGAGTTTGTTTTCTTTTCTTTTCTTTTCCCCTCTCCTCTTTCTCTTACATCCTTATATGATGTATTTGGGCTGCATGTTTTGTTGCAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAACGAAGATTCTTCGTAACAAAAAGAAGACTTGAACCCAAAGCATGTTTGCCCCATTTGGTGTAGATCTATAATTTAATACACTTGATACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCGATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTGTAGAAGTTTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATATATTCTTAAACTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGTTACAGCCCTACAACTTTGCAGGATATATTATGTTAGTTGCTGTCCAAGCTTTTTTTAATTGAATATCTATCGTGAAC

mRNA sequence

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCTGGACGACATCCCGAGCGGTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAGTCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACCGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAACGAAGATTCTTCGTAACAAAAAGAAGACTTGAACCCAAAGCATGTTTGCCCCATTTGGTGTAGATCTATAATTTAATACACTTGATACAAATAATGTTGGGGACCTCCATTACTTGATTAGATCAATGTGAATGAATATCACACCGATCTCAGTTTAAGAAATTGTTAAATTTTGAGTGTGTAGAAGTTTTTAAATCAACTAGATTACAATATATTTGATTTTTGTGCTCTCCATTCTGGTCCATATATTCTTAAACTGTTTATGTTAGTACTTAAATTGTATTAATGTTTTGTTACAGCCCTACAACTTTGCAGGATATATTATGTTAGTTGCTGTCCAAGCTTTTTTTAATTGAATATCTATCGTGAAC

Coding sequence (CDS)

ATGTCCGATCCGCCGGACGGCGTCGAAACTCCCATGGAAGCTACTTCCAGCTCGCCGTCACCGACTCGTTCCCGCGGCGGACCTAGACAGAGTGGCTCCGGAAATGGGAACGAACGGCCTAGATTTTTCGACACAAAAGCGAAAGCCATTTGTTGGGCCAAGGCCGATACTGTCCCTGGACGACATCCCGAGCGGTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGCAAGCGCTTCTGCAACTGCCAGGGATGCCTCTGCTTCGAGTATGATCACATAGTCCCCTTCTCAAAAGGCGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAGTCGGATAAAGACGATGTTGATACGTCTCAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACCGATAAGGAGCTTGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGAAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTCGGCCAATATAAATCCAAAGACCGCTTGGCCCCTTGCAAGTTGCCATATAACGAAGATTCTTCGTAA

Protein sequence

MSDPPDGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS

Homology

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BLAST of CmaCh11G001220 vs. TrEMBL
Match: A0A0A0LUK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.5e-99
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1


Query: 6   DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPER 65
           DGV TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPER
Sbjct: 24  DGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPER 83

Query: 66  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVD 125
           WRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVD
Sbjct: 84  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVD 143

Query: 126 TSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 185
           TS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLP
Sbjct: 144 TSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 203

Query: 186 YNEDSS 192
           YNE+ S
Sbjct: 204 YNEEGS 209

[Close]

BLAST of CmaCh11G001220 vs. TrEMBL
Match: M5WAX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 8.6e-82
Identity = 146/174 (83.91%), Postives = 155/174 (89.08%), Query Frame = 1


Query: 14  ATSSSPSPTRSRGGPRQ--SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 73
           ++ SS SP RSRGG     S  G G +RPRFFD+KAK+ CWAKAD VPGRHPERWRKDAA
Sbjct: 4   SSPSSSSPHRSRGGGDNGTSSKGKGEDRPRFFDSKAKSNCWAKADVVPGRHPERWRKDAA 63

Query: 74  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 133
           GNVVCKRFCNCQGCLCFEYDHIVPFSKGGEST DNCQILQTRVNRFKSDKD +D +QLKG
Sbjct: 64  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTEDNCQILQTRVNRFKSDKDQIDKTQLKG 123

Query: 134 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 186
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTV+EMLGQYKSKD+ A CKLP
Sbjct: 124 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQYKSKDKTAACKLP 177

[Close]

BLAST of CmaCh11G001220 vs. TrEMBL
Match: V4TQC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-80
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 1


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNE-RPRFFDTKAKAICWAKADTVPGRHPERWRKDA 71
           M ++SSS S +      R S S N NE RPR+FD KAK++CWAKA+TVPGRHPERWRKDA
Sbjct: 1   MSSSSSSSSSSSLPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDA 60

Query: 72  AGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLK 131
           AGN+VCKRFCNC GCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK+ VD ++LK
Sbjct: 61  AGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLK 120

Query: 132 GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           G+SCDVKFTDKELDIIEMAVYGDVIRPGNQCRC+TV+EMLGQ+KSKDR+A CKLPY+ +S
Sbjct: 121 GFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRMAACKLPYDGES 180

[Close]

BLAST of CmaCh11G001220 vs. TrEMBL
Match: A0A0D2TTQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-80
Identity = 143/176 (81.25%), Postives = 160/176 (90.91%), Query Frame = 1


Query: 16  SSSPSPTRSRGGPRQSGSGNGN-ERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNV 75
           SSSPSP RSR       S NG  ERPRFFD+KAK+ CWA A+TVPGRHPERWRKDAAGN+
Sbjct: 2   SSSPSPRRSR-------SSNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNI 61

Query: 76  VCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSC 135
           VCKRFCNCQGCLCFEYDHIVPFSKGGESTA+NCQILQTRVNRFKS+K+D+DT++LKGYSC
Sbjct: 62  VCKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSC 121

Query: 136 DVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           +V+FTDKELDIIEMAVYGDVIRPGNQCRCRT++EMLGQYKSKD LA CKLP +++S
Sbjct: 122 EVQFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKES 170

[Close]

BLAST of CmaCh11G001220 vs. TrEMBL
Match: A0A0B0MHS4_GOSAR (Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.2e-80
Identity = 142/176 (80.68%), Postives = 160/176 (90.91%), Query Frame = 1


Query: 16  SSSPSPTRSRGGPRQSGSGNGN-ERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNV 75
           SSSPSP RSR       S NG  ERPRFFD+KAK+ CWA A+TVPGRHPERWRKDAAGN+
Sbjct: 2   SSSPSPRRSR-------SSNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNI 61

Query: 76  VCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSC 135
           VCKRFCNCQGCLCFEYDHIVPFSKGGESTA+NCQILQTRVNRFKS+K+D+DT++LKGYSC
Sbjct: 62  VCKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSC 121

Query: 136 DVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           +V+FT+KELDIIEMAVYGDVIRPGNQCRCRT++EMLGQYKSKD LA CKLP +++S
Sbjct: 122 EVQFTEKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKES 170

[Close]

BLAST of CmaCh11G001220 vs. TAIR10
Match: AT1G18680.1 (AT1G18680.1 HNH endonuclease domain-containing protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-69
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 1


Query: 10  TPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKD 69
           T     ++ P P+      R +   NG ERPRFFD KAK  CWA AD VPGRHPERWRKD
Sbjct: 10  TNSTTAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKD 69

Query: 70  AAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQL 129
            AGN+VCKRF NC GCLCFEYDHIVP+SKGGES A+NCQILQTRVNRFKS +++VD + L
Sbjct: 70  VAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTL 129

Query: 130 KGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 186
           K YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 130 KSYSCGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of CmaCh11G001220 vs. TAIR10
Match: AT3G47490.1 (AT3G47490.1 HNH endonuclease)

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-35
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 31  SGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 90
           SG G+ N  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +Y
Sbjct: 99  SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDY 158

Query: 91  DHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKGYSCDVKFTDKELDIIEMAV 150
           DHIVP+SKGG+ST +NCQ+LQ +VNR K +K D+  S+L   S   +   +++D+IE+  
Sbjct: 159 DHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTA 218

Query: 151 YGDVIRPGNQCRCR 165
           YG+V R      CR
Sbjct: 219 YGNVQRAPTSSGCR 232

[Close]

BLAST of CmaCh11G001220 vs. NCBI nr
Match: gi|700208600|gb|KGN63696.1| (hypothetical protein Csa_1G011480 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 5.0e-99
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1


Query: 6   DGVETPMEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPER 65
           DGV TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPER
Sbjct: 24  DGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPER 83

Query: 66  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVD 125
           WRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVD
Sbjct: 84  WRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVD 143

Query: 126 TSQLKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP 185
           TS+LKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLP
Sbjct: 144 TSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 203

Query: 186 YNEDSS 192
           YNE+ S
Sbjct: 204 YNEEGS 209

[Close]

BLAST of CmaCh11G001220 vs. NCBI nr
Match: gi|659105999|ref|XP_008453224.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 3.6e-97
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 1


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS 179

[Close]

BLAST of CmaCh11G001220 vs. NCBI nr
Match: gi|449440818|ref|XP_004138181.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus])

HSP 1 Score: 359.8 bits (922), Expect = 3.0e-96
Identity = 167/180 (92.78%), Postives = 174/180 (96.67%), Query Frame = 1


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSS 191
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+ S
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 180

[Close]

BLAST of CmaCh11G001220 vs. NCBI nr
Match: gi|659105995|ref|XP_008453223.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 1


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 191
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180

[Close]

BLAST of CmaCh11G001220 vs. NCBI nr
Match: gi|778655999|ref|XP_011660190.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 1.7e-94
Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 1


Query: 12  MEATSSSPSPTRSRGGPRQSGSGNGNERPRFFDTKAKAICWAKADTVPGRHPERWRKDAA 71
           MEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKA CWAKAD VPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 72  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKDDVDTSQLKG 131
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+KDDVDTS+LKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 132 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 191
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 180

The following BLAST results are available for this feature:

BLAST of CmaCh11G001220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK3_CUCSA	3.5e-99	92.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1	[more]
M5WAX4_PRUPE	8.6e-82	83.91	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1	[more]
V4TQC1_9ROSI	2.1e-80	78.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1	[more]
A0A0D2TTQ0_GOSRA	2.1e-80	81.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1	[more]
A0A0B0MHS4_GOSAR	6.2e-80	80.68	Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1	[more]

BLAST of CmaCh11G001220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18680.1	1.5e-69	67.61	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	7.0e-35	47.01	HNH endonuclease	[more]

BLAST of CmaCh11G001220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208600\|gb\|KGN63696.1\|	5.0e-99	92.47	hypothetical protein Csa_1G011480 [Cucumis sativus]	[more]
gi\|659105999\|ref\|XP_008453224.1\|	3.6e-97	94.41	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]	[more]
gi\|449440818\|ref\|XP_004138181.1\|	3.0e-96	92.78	PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus]	[more]
gi\|659105995\|ref\|XP_008453223.1\|	2.0e-95	92.35	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]
gi\|778655999\|ref\|XP_011660190.1\|	1.7e-94	90.76	PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002711	HNH

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004519	endonuclease activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001220.1	CmaCh11G001220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 76..110 score: 1.
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 38..190 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G001220	Cucsa.197940	Cucumber (Gy14) v1	cgycmaB0578
CmaCh11G001220	Cla019088	Watermelon (97103) v1	cmawmB136
CmaCh11G001220	Csa1G011480	Cucumber (Chinese Long) v2	cmacuB097
CmaCh11G001220	MELO3C017197	Melon (DHL92) v3.5.1	cmameB106
CmaCh11G001220	ClCG06G015940	Watermelon (Charleston Gray)	cmawcgB127
CmaCh11G001220	CSPI01G02550	Wild cucumber (PI 183967)	cmacpiB098
CmaCh11G001220	CmoCh11G001900	Cucurbita moschata (Rifu)	cmacmoB118
CmaCh11G001220	Lsi06G014430	Bottle gourd (USVL1VR-Ls)	cmalsiB129
CmaCh11G001220	MELO3C017197.2	Melon (DHL92) v3.6.1	cmamedB113
CmaCh11G001220	CsaV3_1G002610	Cucumber (Chinese Long) v3	cmacucB0112
CmaCh11G001220	Cla97C06G125520	Watermelon (97103) v2	cmawmbB131
CmaCh11G001220	Bhi02G000198	Wax gourd	cmawgoB0151
CmaCh11G001220	CsGy1G002580	Cucumber (Gy14) v2	cgybcmaB040

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G001220	Cucumber (Chinese Long) v3	cmacucB0119
CmaCh11G001220	Watermelon (97103) v2	cmawmbB121
CmaCh11G001220	Wax gourd	cmawgoB0136
CmaCh11G001220	Cucurbita maxima (Rimu)	cmacmaB079
CmaCh11G001220	Cucurbita maxima (Rimu)	cmacmaB143
CmaCh11G001220	Cucumber (Gy14) v1	cgycmaB0261
CmaCh11G001220	Cucurbita moschata (Rifu)	cmacmoB107
CmaCh11G001220	Cucurbita moschata (Rifu)	cmacmoB140
CmaCh11G001220	Wild cucumber (PI 183967)	cmacpiB104
CmaCh11G001220	Cucumber (Chinese Long) v2	cmacuB105
CmaCh11G001220	Melon (DHL92) v3.5.1	cmameB089
CmaCh11G001220	Watermelon (Charleston Gray)	cmawcgB118
CmaCh11G001220	Watermelon (97103) v1	cmawmB119
CmaCh11G001220	Cucurbita pepo (Zucchini)	cmacpeB127
CmaCh11G001220	Cucurbita pepo (Zucchini)	cmacpeB142
CmaCh11G001220	Cucurbita pepo (Zucchini)	cmacpeB149
CmaCh11G001220	Bottle gourd (USVL1VR-Ls)	cmalsiB111
CmaCh11G001220	Cucumber (Gy14) v2	cgybcmaB046
CmaCh11G001220	Melon (DHL92) v3.6.1	cmamedB097
CmaCh11G001220	Silver-seed gourd	carcmaB0063
CmaCh11G001220	Silver-seed gourd	carcmaB0642