Csa1G011480.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G011480.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	HNH endonuclease family protein, expressed; contains IPR003615 (HNH nuclease)
Location	Chr1 : 1609234 .. 1611558 (-)
Sequence length	633

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGGTGAGTCGGCCCGCTGAAAGAAGAGTCGAGGGGCAATGATCGGCGTAATTTAAGAACGGAATGATCCAATGTCTTCAGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGTAGTATGATTCTTTAGTCGACGATTGGTTTCTGATTCCGATTTGAGAAATTTTGCTTCTGCTGTTGAGTTCAGGGTTTAGTTTGGATTGTGATGAAATTTTTCGGCGACTGTTTGCAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGGTACTTCTTCATCCTGCTCCAATTCTTTCTTTTGGTATTCATATTCTTCTATTTTTCATATCCATTTATTGGCTGGTAATCTATGAGCTGCCGATACCAAGTTACATAAAATCAGATTTACATATATCTCACTTTCTAGTTTCCGTACTGCCTATAATTTTTCGCAAATTCTTTCTGCCGTACTATTCAATGCAAGAACTTCTCAAATTCATGCTTGTTTAAGCTACGAGTAAACCATCCGTTTCGAATACCAAAGTAGTTCACCCTACTGTTGTTTTGTTATTGCAATTTCTCCCAGTAAAATATAACTTTTGGCATTGATCTCTTTTTCTTAGCTGCCCCATATGGCCAAATGTTCATCAGCTTTTACGTAATCATATGGTTTGTTGCTCAAAATCTGTAGTTTCTGTAAAGTTGCTCAGCCATACCGTGAGACAATTGATTGGCTGTTGTGCTTTTATTTAACTTTTGTTGGTACTTGATGACAATTTCGGGGAAAGTGATCTAGAAACATCATTACAGTTTCAGGAAAGTGCTAGAAAGTGAAGTTTCAATTGTTTTAGAAAGATCTGTTGTCCTGTCCCATATTAGCTGTCATTTCTGGTGGTAGTTTCTGATTAAAAATTTAAAACAAACGAGTTCTTGTATTTTAGGTCATCTGAAACTTTAAGTGATGAATCTCCGTAGGCTGCTGTCTAGAACTTCGAAGTATAAACTCACCTCCTTGAGGTTATGAATTCTAATATCTTATGAAAATTTCATTGAATGATGTAGTATAATTAAATTGCTGTGCATAAGCAGACAAGGGCACTCTCTGTGTATAAGATCGTCACCTCTTAGTTCATTGTGCTTTTCCCTTTGAAACCTGCTTTCATGCATCTCAAGAAAGTCACTTTGTTACCAACCCACCAAAGAAACTCCTTTGACATTTTTTTTTTTGTATAGAAACTATTTTCTCATGTAAGGGCGTACAAAAAAGAAAAAAAAACAAGCCTGCACCTACTGAATAGAATGTGCATAAAGAGTAATTACAAAATGTGTTTGAAATGGAAGGCTAAACATCAATTGGATATCTCTCCTCCACCTCTCCCTAACCACAGTTATTTCTCTACCTCATCAATCTCACATTTAATCGCACACCCAACATCTCAAAGCAAGCAATCATTCTCACCAAAAGACTGATGGAGAACTCGCTCCCCTATTGAACCACTAACGCTTGACCATCTCATGGTAGTCTATATTATAGAATCTGATTAAAACAGTTGATGCGTCAAGGTTTTTTCGCGTCTATCTCACATCCATATATGATGTATTTGGGTTTCATAATTCCTTGCAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAACAACAAAGAAGACTTGAAACTAAAGCATGTTTGCCCCATCTATAGTTTAATACGATTGATAAACATCATTTTAAGATTACATCAATTAGAATTGTGTGGACCTCCATTACTTGATTAGATCAATATGAATCAACATCGACCATCATTTTTTATTTATTA

mRNA sequence

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAA

Coding sequence (CDS)

ATGGGCCTTCTCCAATTTCCCCGTTCGGCCCATTCAGATTGTGGGCGTTTCTTCCATTTTTGTCTGCTGGACGGCGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGGCAAAGAGATAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTAGTTGTTGGGCTAAGGCGGATGTTGTCCCTGGGCGGCATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGTAACTGCCAGGGCTGCCTCTGTTTTGAGTATGATCACATTGTCCCTTACTCTAAAGGAGGCGAATCCACGGCGGATAATTGCCAGATTCTTCAGACGAGAGTAAACAGATTCAAATCGAACAAAGACGATGTTGATACGTCTGAGTTGAAAGGCTATTCGTGTGATGTCAAGTTTACTGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGTAGAACAGTTTCTGAAGTGCTTGGGCAATATAAATCTAAAGACCGTTTGGCCCCCTGCAAATTGCCATATAATGAAGAAGGTTCTTTGTAA

Protein sequence

MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGSL*

Homology

[Close]

BLAST of Csa1G011480.1 vs. TrEMBL
Match: A0A0A0LUK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 3.8e-123
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60
           MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF
Sbjct: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60

Query: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120
           FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES
Sbjct: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120

Query: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180
           TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR
Sbjct: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180

Query: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 211
           CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL
Sbjct: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 210

[Close]

BLAST of Csa1G011480.1 vs. TrEMBL
Match: M5WAX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.5e-82
Identity = 143/174 (82.18%), Postives = 159/174 (91.38%), Query Frame = 1


Query: 32  ATSSSPSPTRSRGGQRD--SGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 91
           ++ SS SP RSRGG  +  S  G G++RPRFFD+KAK++CWAKADVVPGRHPERWRKDAA
Sbjct: 4   SSPSSSSPHRSRGGGDNGTSSKGKGEDRPRFFDSKAKSNCWAKADVVPGRHPERWRKDAA 63

Query: 92  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 151
           GNVVCKRFCNCQGCLCFEYDHIVP+SKGGEST DNCQILQTRVNRFKS+KD +D ++LKG
Sbjct: 64  GNVVCKRFCNCQGCLCFEYDHIVPFSKGGESTEDNCQILQTRVNRFKSDKDQIDKTQLKG 123

Query: 152 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 204
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTV+E+LGQYKSKD+ A CKLP
Sbjct: 124 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQYKSKDKTAACKLP 177

[Close]

BLAST of Csa1G011480.1 vs. TrEMBL
Match: A0A0D2TTQ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.9e-80
Identity = 139/174 (79.89%), Postives = 156/174 (89.66%), Query Frame = 1


Query: 34  SSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVV 93
           SSSPSP RSR       S   +ERPRFFD+KAK+ CWA A+ VPGRHPERWRKDAAGN+V
Sbjct: 2   SSSPSPRRSRS------SNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNIV 61

Query: 94  CKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCD 153
           CKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQTRVNRFKSNK+D+DT+ LKGYSC+
Sbjct: 62  CKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSCE 121

Query: 154 VKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           V+FTDKELDIIEMAVYGDVIRPGNQCRCRT++E+LGQYKSKD LA CKLP ++E
Sbjct: 122 VQFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKE 169

[Close]

BLAST of Csa1G011480.1 vs. TrEMBL
Match: A0A0B0MHS4_GOSAR (Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79
Identity = 138/174 (79.31%), Postives = 156/174 (89.66%), Query Frame = 1


Query: 34  SSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVV 93
           SSSPSP RSR       S   +ERPRFFD+KAK+ CWA A+ VPGRHPERWRKDAAGN+V
Sbjct: 2   SSSPSPRRSRS------SNGEEERPRFFDSKAKSKCWANAETVPGRHPERWRKDAAGNIV 61

Query: 94  CKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCD 153
           CKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQTRVNRFKSNK+D+DT+ LKGYSC+
Sbjct: 62  CKRFCNCQGCLCFEYDHIVPFSKGGESTAENCQILQTRVNRFKSNKEDLDTTRLKGYSCE 121

Query: 154 VKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           V+FT+KELDIIEMAVYGDVIRPGNQCRCRT++E+LGQYKSKD LA CKLP ++E
Sbjct: 122 VQFTEKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQYKSKDNLAACKLPLDKE 169

[Close]

BLAST of Csa1G011480.1 vs. TrEMBL
Match: V4TQC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 136/176 (77.27%), Postives = 157/176 (89.20%), Query Frame = 1


Query: 32  ATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGN 91
           ++SSS  P RSR     + + S +ERPR+FD KAK+ CWAKA+ VPGRHPERWRKDAAGN
Sbjct: 7   SSSSSSLPNRSRSS---NSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGN 66

Query: 92  VVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYS 151
           +VCKRFCNC GCLCFEYDHIVP+SKGGESTADNCQILQTRVNRFKS+K+ VD ++LKG+S
Sbjct: 67  IVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFS 126

Query: 152 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           CDVKFTDKELDIIEMAVYGDVIRPGNQCRC+TV+E+LGQ+KSKDR+A CKLPY+ E
Sbjct: 127 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRMAACKLPYDGE 179

[Close]

BLAST of Csa1G011480.1 vs. TAIR10
Match: AT1G18680.1 (AT1G18680.1 HNH endonuclease domain-containing protein)

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-71
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 1


Query: 28  TPMEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKD 87
           T     ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD
Sbjct: 10  TNSTTAAAVPPPSPPSSPSRSNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKD 69

Query: 88  AAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSEL 147
            AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQILQTRVNRFKS +++VD + L
Sbjct: 70  VAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTL 129

Query: 148 KGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLP 204
           K YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Sbjct: 130 KSYSCGLQFTDKELDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGKAACELP 185

[Close]

BLAST of Csa1G011480.1 vs. TAIR10
Match: AT3G47490.1 (AT3G47490.1 HNH endonuclease)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-35
Identity = 75/176 (42.61%), Postives = 94/176 (53.41%), Query Frame = 1


Query: 27  PTPMEATSSSPSPTRSRGGQRDS------------------GSGSGDERP--RFFDAKAK 86
           P+      SS SP R+ G  R                    GSG GD  P  R F    K
Sbjct: 57  PSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGSGYGDPNPEPRSFPYSVK 116

Query: 87  ASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQ 146
             CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVPYSKGG+ST +NCQ
Sbjct: 117 QQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQ 176

Query: 147 ILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR 183
           +LQ +VNR K NK D+  SEL   S   +   +++D+IE+  YG+V R      CR
Sbjct: 177 VLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCR 232

[Close]

BLAST of Csa1G011480.1 vs. NCBI nr
Match: gi|700208600|gb|KGN63696.1| (hypothetical protein Csa_1G011480 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 5.5e-123
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


Query: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60
           MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF
Sbjct: 1   MGLLQFPRSAHSDCGRFFHFCLLDGVPTPMEATSSSPSPTRSRGGQRDSGSGSGDERPRF 60

Query: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120
           FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES
Sbjct: 61  FDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGES 120

Query: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180
           TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR
Sbjct: 121 TADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 180

Query: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 211
           CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL
Sbjct: 181 CRTVSEVLGQYKSKDRLAPCKLPYNEEGSL 210

[Close]

BLAST of Csa1G011480.1 vs. NCBI nr
Match: gi|449440818|ref|XP_004138181.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 9.7e-104
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 209
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEEGS 180

Query: 210 L 211
           L
Sbjct: 181 L 181

[Close]

BLAST of Csa1G011480.1 vs. NCBI nr
Match: gi|778655999|ref|XP_011660190.1| (PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 5.3e-102
Identity = 181/185 (97.84%), Postives = 181/185 (97.84%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 209
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 180

Query: 210 EEGSL 211
           EEGSL
Sbjct: 181 EEGSL 185

[Close]

BLAST of Csa1G011480.1 vs. NCBI nr
Match: gi|659105999|ref|XP_008453224.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 2.0e-101
Identity = 176/178 (98.88%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYNEE 208
           YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Sbjct: 121 YSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED 178

[Close]

BLAST of Csa1G011480.1 vs. NCBI nr
Match: gi|659105995|ref|XP_008453223.1| (PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 176/182 (96.70%), Postives = 178/182 (97.80%), Query Frame = 1


Query: 30  MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 89
           MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA
Sbjct: 1   MEATSSSPSPTRSRGGQRDSGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAA 60

Query: 90  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 149
           GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG
Sbjct: 61  GNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKG 120

Query: 150 YSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEVLGQYKSKDRLAPCKLPYN 208
           YSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYN
Sbjct: 121 YSCDVKFTGFLADKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYN 180

The following BLAST results are available for this feature:

BLAST of Csa1G011480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUK3_CUCSA	3.8e-123	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011480 PE=4 SV=1	[more]
M5WAX4_PRUPE	9.5e-82	82.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012267mg PE=4 SV=1	[more]
A0A0D2TTQ0_GOSRA	8.9e-80	79.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G195700 PE=4 SV=1	[more]
A0A0B0MHS4_GOSAR	2.6e-79	79.31	Beta-galactosidase 17-like protein OS=Gossypium arboreum GN=F383_18550 PE=4 SV=1	[more]
V4TQC1_9ROSI	1.7e-78	77.27	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022490mg PE=4 SV=1	[more]

BLAST of Csa1G011480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18680.1	3.0e-71	67.61	HNH endonuclease domain-containing protein	[more]
AT3G47490.1	1.6e-35	42.61	HNH endonuclease	[more]

BLAST of Csa1G011480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208600\|gb\|KGN63696.1\|	5.5e-123	100.00	hypothetical protein Csa_1G011480 [Cucumis sativus]	[more]
gi\|449440818\|ref\|XP_004138181.1\|	9.7e-104	100.00	PREDICTED: uncharacterized protein LOC101204599 isoform X2 [Cucumis sativus]	[more]
gi\|778655999\|ref\|XP_011660190.1\|	5.3e-102	97.84	PREDICTED: uncharacterized protein LOC101204599 isoform X1 [Cucumis sativus]	[more]
gi\|659105999\|ref\|XP_008453224.1\|	2.0e-101	98.88	PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]	[more]
gi\|659105995\|ref\|XP_008453223.1\|	1.1e-99	96.70	PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002711	HNH
IPR003615	HNH_nuc

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004519	endonuclease activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G011480	Csa1G011480	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G011480.1	Csa1G011480.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G011480.1.utr3p1	Csa1G011480.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G011480.1.cds4	Csa1G011480.1.cds4	CDS
Csa1G011480.1.cds3	Csa1G011480.1.cds3	CDS
Csa1G011480.1.cds2	Csa1G011480.1.cds2	CDS
Csa1G011480.1.cds1	Csa1G011480.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002711	HNH endonuclease	PFAM	PF01844	HNH	coord: 94..128 score: 5.
IPR003615	HNH nuclease	SMART	SM00507	HNH_5	coord: 80..134 score: 0.
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 56..207 score: 5.8