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| Name | Csa1G009730 |
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| Type | gene |
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| Organism | Cucumis. sativus (Cucumber (Chinese Long) v2) |
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| Description | Protein DCL; contains IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223) |
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| Location | Chr1 : 1467359 .. 1469635 (+) |
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The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. TTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGGTATGATATTATTAACTTATTTTAAATGTGTCATAGTTCTCTGTTTTTGTTAATTGAAAGCTCGAGAATGATATTGAGAAAATACTAATTTTGTTATAAGGGATTGTTGGAACTTGGTTGAACAGTTTTAGCAAAAGGGTTTCTATATAACTGCATGCTTATTCAAAAGGGAATCTCAAATGTCCAAGTTCTTTTTTATATTATTTGAATACAATGCTTGCTTGTTTGAATTATTTATGGTTTCCTGTTGTTGAGTATAATTTAATTGAAGACATAAAGATTGTATTGCTTCTTACTGCCAGTTAGATTAATTATTGTTGTTTGTTTAATTTGATAAAATTTGAACTCGAATGGATATTCATCTATATTGTGCTCTATTTGGTCGTGTTATGATTCGTTTAGTTGATTCTTTTAGTAAATTTTTGTTGTTATGGCTGGATGGTTTTTCCTAAACTAAGTATGATTTTTGAGTCAGTTTCCAATATTTCTTCAAATGTTTTGTTGACGGTTGGTTGGTGTCCGTTTTACTCTAAACCTACTTACTTCTTTAGATGAGACTGTTCGACTTTATTAATTATGGAAAATGGAATCTGGGTAGTACTAGAAAAATCCCAGCCTGGAGGGATAAATTTTATTTGTTTCTGTGACGGATACTCTTTTACCTTATTTGCTCATTCAAGAATTTCTTTCAGCAGTTTATTTTTCTTGTGTTATGTTGTTATTCTTCAGGATTCCCGTATTCTTGATTGATTGATGTCTGTGGAATTAATTAATGATATTGATATACTTTATCTATATACTACGGTATGGCTTATCCTGTGATGTGGAGCAAATTATTCAAACAGAAGCTATGGCTTCTAACCGTTTGTGATACAATGAGAACATTTTTATCAAATAATTCGTAATTAGAAATGCAGTCAAGTGTTTATCTTCTACTGTCTTAAAGCGTTTAGAAGTGTATTCCTTTAGGCTTTAGCTCACCTTACCATAACTTAAATGGTTAAAACATAAGCAATGCCAATTTTAGGCTTGAATTTATGTTCTATGAAGAGTGTATTTCCTTAAGGTCCCCTATATTAACTTGTAAGTCGTGCTTTTCATTTAATTAACAGCCTTTCCAACGTAAAAGATAATCCCCCGAAGTCATTGACTTGATTTGAAACATCTATAAATGATAATTTACATGATGAGAAAGCAGTGACTCTGTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAG mRNA sequence ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA Coding sequence (CDS) ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA Protein sequence MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN*
BLAST of Csa1G009730 vs. TAIR10
Match: AT5G62440.1 (AT5G62440.1 Protein of unknown function (DUF3223)) HSP 1 Score: 216.5 bits (550), Expect = 1.8e-56 Identity = 117/229 (51.09%), Postives = 139/229 (60.70%), Query Frame = 1
Query: 3 EETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADDGV 62
+E + L EV DME+ET PKA T GD +RE E ++G
Sbjct: 5 QEIVDSLSAEVNPDQKVDMEVETATPKAET-------------GDEKREREETEEEENG- 64
Query: 63 ADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWPVN 122
+ KKQK+ + EE+ PV LGPK F +SV +FDYF K LH WP +
Sbjct: 65 GESKKQKVGE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTD 124
Query: 123 LNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDFSF 182
L+VN+YE MVL+DL+KKGH EPEKKIG GI +FQ+R HP WKS+CFFL+RED++ADDFSF
Sbjct: 125 LDVNKYEHMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSF 184
Query: 183 RKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWR 232
RKCVD ILPLPEN K GGG RGGG G GGRG G GGR+R
Sbjct: 185 RKCVDQILPLPENMKTPGANGNGHGGG--RGGGGGRRGGRGGGRGGRFR 201
BLAST of Csa1G009730 vs. NCBI nr
Match: gi|778655953|ref|XP_011660085.1| (PREDICTED: protein DCL, chloroplastic [Cucumis sativus]) HSP 1 Score: 484.2 bits (1245), Expect = 1.3e-133 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
Query: 1 MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD
Sbjct: 1 MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
Query: 61 GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP
Sbjct: 61 GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF
Sbjct: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 233
SFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN
Sbjct: 181 SFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232
BLAST of Csa1G009730 vs. NCBI nr
Match: gi|659105915|ref|XP_008453205.1| (PREDICTED: protein DCL, chloroplastic [Cucumis melo]) HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125 Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 1
Query: 1 MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
MAEETIPQLDPEVTNSGTEDMELETT PK S+DASEA EAAPVINGDA SKREREESADD
Sbjct: 1 MAEETIPQLDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREESADD 60
Query: 61 GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
GV DGKKQKIEKSVEEER+EKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH+WP
Sbjct: 61 GVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHNWP 120
Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
+NLNVNQYEQMVLVDLLKKGHLEPEKKIGCGI +FQIRFHP WKSKCFFLIREDESADDF
Sbjct: 121 INLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDESADDF 180
Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 233
SFRKCVDHILPLPENFK K DANRALGGGKHRGGGRGGGGGRGRGGGGRWRN
Sbjct: 181 SFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232
BLAST of Csa1G009730 vs. NCBI nr
Match: gi|1009132640|ref|XP_015883480.1| (PREDICTED: protein DCL, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 266.5 bits (680), Expect = 4.2e-68 Identity = 146/252 (57.94%), Postives = 174/252 (69.05%), Query Frame = 1
Query: 1 MAEETIPQL---DPEVTNSGTEDMELETTE-----PKASTDASE---ANEAAPVINGDAT 60
MAEET+ +L + E + EDMELET E K D AN A P NG+A
Sbjct: 1 MAEETVAELLYTNLEGADVPGEDMELETLENGQEDTKGDGDGGSGAVANGAEPPANGEAN 60
Query: 61 SKREREESADDGVADG----KKQKIEKSVEEERLEKLGGDGKCEEE-------PVPVSLG 120
SKR REE ++ + KKQK+EKSVEE+RLEKLGG G +E V V LG
Sbjct: 61 SKRAREEEEEEEEEENNGVSKKQKVEKSVEEDRLEKLGGGGSGGKEGENGDDGSVRVKLG 120
Query: 121 PKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIR 180
PK F SSVE+FDYF+K+LH WP N+N+N+YEQMVL+DLLKKGH EP+KKIG GI +FQ+R
Sbjct: 121 PKEFVSSVEMFDYFFKLLHFWPTNVNINKYEQMVLLDLLKKGHAEPDKKIGGGIKAFQVR 180
Query: 181 FHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRG-GGRG 230
FHP +KS+CFFL+R DE+ DDFSFRKCVD ILPLPE+ + K DANR L GG +G GGRG
Sbjct: 181 FHPTFKSRCFFLLRNDETTDDFSFRKCVDRILPLPEHMQIKSDANRGLSGGGGKGRGGRG 240
BLAST of Csa1G009730 vs. NCBI nr
Match: gi|225457413|ref|XP_002284935.1| (PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera]) HSP 1 Score: 263.8 bits (673), Expect = 2.8e-67 Identity = 139/241 (57.68%), Postives = 173/241 (71.78%), Query Frame = 1
Query: 1 MAEETIPQLDPEVTN---SGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60
MAE + + VT + T+DM++E EP + A+ V NGD+ SKR REE+
Sbjct: 1 MAETVVSETPETVTERETANTQDMDVEAPEPSQPNGSDSADN---VTNGDSNSKRGREEA 60
Query: 61 ADDGVADG---KKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYK 120
+ A+ KKQK+EKSVEEERLEKL + E SLGPK+F SSVE+FD+F+K
Sbjct: 61 GEGEDANDAVTKKQKVEKSVEEERLEKLEAE---VVETGRFSLGPKTFGSSVEMFDHFFK 120
Query: 121 ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIRED 180
LH+WP NL+VN+YE M+L+DLLKKGH EP+KKIG GIH+FQ+R+HP +KS+CFF+IR+D
Sbjct: 121 FLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDD 180
Query: 181 ESADDFSFRKCVDHILPLPENFKGKFDANRALGGGK--HRGGGRGGGGGRGRGG-GGRWR 233
ES DDFSFRKCVDHI PLPEN K K + N+ALGGG+ GGG G GGGRGRGG GGR R
Sbjct: 181 ESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGGRGGKGGGGGGRGGGRGRGGRGGRGR 235
BLAST of Csa1G009730 vs. NCBI nr
Match: gi|645269311|ref|XP_008239940.1| (PREDICTED: protein DCL, chloroplastic [Prunus mume]) HSP 1 Score: 258.5 bits (659), Expect = 1.2e-65 Identity = 140/232 (60.34%), Postives = 167/232 (71.98%), Query Frame = 1
Query: 1 MAEETIPQLDPEVTNSGT----EDMELETTEPKASTDASEANEAAPVINGDATSKREREE 60
MAE+T+ +L TNS T EDMELE +EP + E +A +KR R+E
Sbjct: 1 MAEKTVSELAE--TNSETAAAAEDMELEASEPAPAEKPDEGTNG----EAEANAKRLRDE 60
Query: 61 SADDGV-ADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKI 120
+G A KK K+EKS EEERLEKLG +GK E VSLGPKSF SSVE+FDYFYK+
Sbjct: 61 EGSEGNDAVAKKTKVEKSPEEERLEKLG-EGK---ESGRVSLGPKSFGSSVEMFDYFYKL 120
Query: 121 LHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDE 180
LH+WP +L+VN+YE +VL+DLLKKGH EP+KKIG G+H+FQ+R HP +KS+CFFLIREDE
Sbjct: 121 LHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVHAFQVRTHPLYKSRCFFLIREDE 180
Query: 181 SADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGG 228
+ DDFSFRKCVD ILPLPEN K DAN+ALGG RGGG G GG RGRG G
Sbjct: 181 AVDDFSFRKCVDQILPLPENMKAHSDANKALGGKGGRGGGGGRGGWRGRGRG 222
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| AT5G62440.1 | 1.8e-56 | 51.09 | Protein of unknown function (DUF3223) | [more] |
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021602 | Protein of unknown function DUF3223 |
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009308 |
amine metabolic process |
| biological_process |
GO:0003006 |
developmental process involved in reproduction |
| biological_process |
GO:0008150 |
biological_process |
| biological_process |
GO:0051302 |
regulation of cell division |
| biological_process |
GO:0006606 |
protein import into nucleus |
| biological_process |
GO:0000338 |
protein deneddylation |
| biological_process |
GO:0009640 |
photomorphogenesis |
| biological_process |
GO:0017126 |
nucleologenesis |
| biological_process |
GO:0000741 |
karyogamy |
| biological_process |
GO:0009560 |
embryo sac egg cell differentiation |
| biological_process |
GO:0048825 |
cotyledon development |
| biological_process |
GO:0009987 |
cellular process |
| biological_process |
GO:0006997 |
nucleus organization |
| biological_process |
GO:0009793 |
embryo development ending in seed dormancy |
| biological_process |
GO:0051301 |
cell division |
| biological_process |
GO:0044702 |
single organism reproductive process |
| biological_process |
GO:0044763 |
single-organism cellular process |
| biological_process |
GO:0009791 |
post-embryonic development |
| biological_process |
GO:0009790 |
embryo development |
| cellular_component |
GO:0005575 |
cellular_component |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0048038 |
quinone binding |
| molecular_function |
GO:0005507 |
copper ion binding |
| molecular_function |
GO:0003674 |
molecular_function |
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
| Feature Name | Unique Name | Type |
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| CU089720 | CU089720 | transcribed_cluster |
| CU139670 | CU139670 | transcribed_cluster |
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR021602 | Protein of unknown function DUF3223 | PFAM | PF11523 | DUF3223 | coord: 114..186
score: 1.2 |
| None | No IPR available | GENE3D | G3DSA:3.10.450.40 | | coord: 94..191
score: 4.6 |
| None | No IPR available | PANTHER | PTHR33415 | FAMILY NOT NAMED | coord: 1..232
score: 2.5 |
| None | No IPR available | PANTHER | PTHR33415:SF3 | EMB514 | coord: 1..232
score: 2.5 |
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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