Cp4.1LG18g07910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g07910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase D subunit 1-like protein
LocationCp4.1LG18 : 7465716 .. 7468178 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTTTATTTTCTTAGGGTTTTTACTTTTGAAGTTTTGAAGTTTCAGAGCACACTTGCAAGTTACAATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACAATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAGCCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTGACCAATGGCGATGCAAATTCGAAGCGGGAGAGGGACGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGCGAAGAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGATTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCCGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAATTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGGTTTCATATTATGGACTTCTTTTTAATTTGCTATCGTCCTCTGTTTTGTTAATTGAAAGGTTGAGTTGAGAATGATGCTTATGAAATTTTATGTTAGTTTTAGAACGCAGAGCTGGAACTTGATTGAAATATTTTCTTTTCCCCCAATATTGCTGTTATGGTTTATCATCATCATTATTTTATTTTGTGAAAGTTACATCTGTCTGAAGGGAAAACGAATTGCAAAAGGAGGTGTAGATTTAGGTATCTTGATCCTCAGGAATGGTGAACAATTTTAGCAGGACTTTTTGTTCTAGTCACTTGTTTGAGAAACTGTTGTAATTGTGTACATAATAGAATCAGAGAGGTGACATTCTTCAATATTCTCATGAAATTAATGATGGTTGGTATCAGTTCTGCTCAAAATCCATTTACAGATTTAGATGTTAACACAATCAATCAAAGAATTCCACCATGGATGAATAAAGTTTATTTCTATCTGTGAATCTACTCTCTTGACCTTATTTGCTCATTGAATAAAGTTTTTTTTTTTTTTTTTTTTTTGCATTGTTTTGCTGTTATTCTTTATGATTCCCTTCTTATTCTTGATTGATGTTAGTGGAAGGAACGGATATGCTATATCTATTTATTGATTTCTTTCTGGCATATCCTGTGATGTAGCAAATTATTGAGCATGTACTTATATGGTATAATTTTGCAGTCCAAAAGGGGAAGTAATAATTAGTGTTTAGAAATCCATGTATTCATGGCCGGTACAGGCTGTGATCGCATCGTTATGAAAAAAGTCCTTAAATTGAAAGGCAGTTGGGTGTTATTATTTGTATTCCGTAGCAAATATTAGTACTACTAAAGTCTACCTTTAGCATTTAGTATAACACCCCAAACCAATCGCTAATAGATATTGTCCTCTTTAGGCTTTCCCTCAAGGTTTTCATAGGTTTCCACACTCTTAGAAGGAACGCTTCGTTCCTCTCTCTAACCGATGTGGGATCTCACAATCCCACCTCCCTTAGAGCCCGGCGTCCTTGTTGGCACACCATCCGGTGTCTGGCTTTGATACCATTTGTAACAGCTCAAGCCCACCACTACAAATATTGTTCTTTTGGACTTTCTCTTTTGGGCTTCCCTTCTAGGTTTTAAAACGCCTCTACTAGGAAGAGGTTTACACACTCTTATAAAGAATGCTTCGTTTTTCTTCCCAAATGATGTGGGACCTCACATTTATAGCCTACTTTACTATAACTTTAATGGAACATTAGTAATATCTTTTGTAGGTTTGTATATTGTGGAGGCATTGATTCTGTTGATGATTCAATATTTGATATTTGTTTGTGTGGCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGCGGTGGCAAGCACCGCGGTGGCAGTGGTGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGATGGTTTTGCTAACTTCTTTTGAGTTTCACCACAATTGGACCCAGTCGTCTTCCTGCAAAGAATTCCCCAGAAAATCCCAACCAATGTCGCCCTTGGCCTTGAGTTCGAGGAATAATTTGTTTAAATGCTTTCTCTTGAATATTATCTAAGATTCTTTATTAATTTTGTAGTTGAATAGTGGTTCCTTTGATTCTTTAATTTAGTGATATTTTTCTTCTTTTAAATTCGGTCGGAGAGATTCAAATTCTAATTTCTTGGTCGAGAACATATGTATAAACCAGTCTCACTGTAACAGGCTAAATCTAGTATTGGCAGATATTGTCTTTT

mRNA sequence

GTCTTTTATTTTCTTAGGGTTTTTACTTTTGAAGTTTTGAAGTTTCAGAGCACACTTGCAAGTTACAATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACAATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAGCCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTGACCAATGGCGATGCAAATTCGAAGCGGGAGAGGGACGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGCGAAGAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGATTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCCGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAATTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGCGGTGGCAAGCACCGCGGTGGCAGTGGTGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGATGGTTTTGCTAACTTCTTTTGAGTTTCACCACAATTGGACCCAGTCGTCTTCCTGCAAAGAATTCCCCAGAAAATCCCAACCAATGTCGCCCTTGGCCTTGAGTTCGAGGAATAATTTGTTTAAATGCTTTCTCTTGAATATTATCTAAGATTCTTTATTAATTTTGTAGTTGAATAGTGGTTCCTTTGATTCTTTAATTTAGTGATATTTTTCTTCTTTTAAATTCGGTCGGAGAGATTCAAATTCTAATTTCTTGGTCGAGAACATATGTATAAACCAGTCTCACTGTAACAGGCTAAATCTAGTATTGGCAGATATTGTCTTTT

Coding sequence (CDS)

ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACAATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAGCCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTGACCAATGGCGATGCAAATTCGAAGCGGGAGAGGGACGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGCGAAGAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGATTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCCGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAATTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGCGGTGGCAAGCACCGCGGTGGCAGTGGTGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGA

Protein sequence

MAEETIPQPADNNQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERDEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGGGGRWRN
Homology
[Close]
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match: A0A0A0LRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 7.0e-81
Identity = 185/244 (75.82%), Postives = 199/244 (81.56%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA--EDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERD 60
           MAEETIPQ    + EVTN+  EDMELE TEP A    S  EANEAA V NGDA SKRER 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDAS--EANEAAPVINGDATSKRER- 60

Query: 61  EESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           EESAD  V + KKQK+EKSVEE R+EK  GDGK EEEP PV++GPKSFRSS ELFD+FYK
Sbjct: 61  EESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYK 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
            LHHWP  LNVNQYE+M+L+DLLKKGH EPEKKIGCGIHSFQIR HP WK+KCFFLIRED
Sbjct: 121 ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIRED 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGGGG 240
           ES DDFSFRKCVDHILPLPEN KG+ DAN+A GGGKHR    GGGR GGGGGRGR GGGG
Sbjct: 181 ESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHR----GGGR-GGGGGRGR-GGGG 232

Query: 241 RWRN 243
           RWRN
Sbjct: 241 RWRN 232

[Close]
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match: F6GT77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06240 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 9.9e-59
Identity = 147/246 (59.76%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 1   MAEETIPQPADN--NQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERD 60
           MAE  + +  +    +E  N +DM++E  EP ++P GS+   N    VTNGD+NSKR R+
Sbjct: 1   MAETVVSETPETVTERETANTQDMDVEAPEP-SQPNGSDSADN----VTNGDSNSKRGRE 60

Query: 61  E--ESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           E  E  D +    KKQK+EKSVEE R+EK + +     E G  ++GPK+F SS E+FDHF
Sbjct: 61  EAGEGEDANDAVTKKQKVEKSVEEERLEKLEAE---VVETGRFSLGPKTFGSSVEMFDHF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           +KFLH+WPA L+VN+YE MMLLDLLKKGH EP+KKIG GIH+FQ+R HP++K++CFF+IR
Sbjct: 121 FKFLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGG 240
           +DESVDDFSFRKCVDHI PLPEN+K +S+ NKA GGG  RGG GGGG GG GGGRGRGG 
Sbjct: 181 DDESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGG--RGGKGGGG-GGRGGGRGRGGR 235

Query: 241 GGRWRN 243
           GGR RN
Sbjct: 241 GGRGRN 235

[Close]
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match: M5WNA6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011021mg PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.0e-56
Identity = 141/238 (59.24%), Postives = 176/238 (73.95%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA-EDMELENTEPGAEPK---GSNDEANEAAKVTNGDANSKRE 60
           MAE+T+ + A+ N E   A EDMELE +EP    K   G+N EA         +AN+KR 
Sbjct: 1   MAEKTVSELAETNSETAAAAEDMELEASEPAPAEKPDEGTNGEA---------EANAKRL 60

Query: 61  RDEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           RDEE ++G+   AKK K+EKS EE R+EK  G+GK   E G V++GPKSF SS E+FD+F
Sbjct: 61  RDEEGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           Y+ LH+WP  L+VN+YE ++LLDLLKKGHAEP+KKIG G+ +FQ+R HP++K++CFFLIR
Sbjct: 121 YRLLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRG 235
           EDE+VDDFSFRKCVD ILPLPEN+K  SDANKA GG   +GG GGGG  GG  GRGRG
Sbjct: 181 EDETVDDFSFRKCVDQILPLPENMKAHSDANKALGG---KGGRGGGGGRGGWRGRGRG 222

[Close]
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match: A0A067KG87_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11631 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-51
Identity = 137/252 (54.37%), Postives = 172/252 (68.25%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTN---AEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRER 60
           MAEE   +P + NQE  +   AEDM+L                 E+A   NG   + RE 
Sbjct: 1   MAEEKASEPTELNQERIDSAAAEDMDL---------------VEESA--ANGSKRT-REE 60

Query: 61  DEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGK-----GEEEP-------GPVTIGPKS 120
           +EE   G+ E  KKQK++KSVEE R+EK +G+G+     GEEE        GPV++GPK+
Sbjct: 61  EEEEEKGNDEVLKKQKVDKSVEEERLEKVEGEGEEEGNEGEEEGEEAKQELGPVSLGPKT 120

Query: 121 FRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHP 180
           F SS E+FD+FY FLH WP  LNVN+YE+M+LLDLLKKGH EPEKKIG GI +FQ+R HP
Sbjct: 121 FGSSVEMFDYFYNFLHFWPPNLNVNKYEQMVLLDLLKKGHTEPEKKIGVGIRAFQVRYHP 180

Query: 181 IWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRG 238
           +WK++C FLIR++++VDDFSFRKCVD ILPLPE++K + D NK  GG   +GG GGGGRG
Sbjct: 181 MWKSRCLFLIRDNDTVDDFSFRKCVDKILPLPEDMKIKHDGNKGHGG---KGGGGGGGRG 231

[Close]
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match: A0A0K9RNM1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046230 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 129/226 (57.08%), Postives = 159/226 (70.35%), Query Frame = 1 

Query: 15  EVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERDEESADGSVEEAKKQKM 74
           E    EDMELEN    A  K   +EA EAA V  GDA  K+++ EE              
Sbjct: 6   EPVTTEDMELEN----ATGKRDREEAGEAAAVNGGDA--KKQKVEE-------------- 65

Query: 75  EKSVEEGRIEKAQGDGKGEEEP---GPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ 134
           EKSVEE R+EK +G G+ EE+P   GPV +GPK+F +S E+FD+FYK LHHWP  +N N+
Sbjct: 66  EKSVEEERMEKLEG-GEEEEKPEKSGPVILGPKTFGTSVEMFDYFYKLLHHWPTNINFNK 125

Query: 135 YEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVD 194
           YE ++LL+L+ KGH EPEKK+G GI+ F+IR HP WK++CFF+IR DESV+DFSFRKCVD
Sbjct: 126 YEHLVLLELINKGHPEPEKKVGSGINGFEIRQHPEWKSRCFFVIRADESVEDFSFRKCVD 185

Query: 195 HILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGGG 238
           HILPLPEN+K + D NKA GGG++ G  GG GRG G GG GRGGGG
Sbjct: 186 HILPLPENMKIKGDVNKALGGGRNGGRGGGRGRGRGRGGGGRGGGG 210

[Close]
BLAST of Cp4.1LG18g07910 vs. TAIR10
Match: AT5G62440.1 (AT5G62440.1 Protein of unknown function (DUF3223))

HSP 1 Score: 174.9 bits (442), Expect = 6.2e-44
Identity = 108/213 (50.70%), Postives = 134/213 (62.91%), Query Frame = 1 

Query: 21  DMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERDEESADGSVEEAKKQKMEKSVEE 80
           DME+E   P AE                GD   +RE  EE  +G   E+KKQK+ +    
Sbjct: 22  DMEVETATPKAE---------------TGDEKREREETEEEENGG--ESKKQKVGE---- 81

Query: 81  GRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDL 140
                       EE+ GPV +GPK F +S  +FD+F KFLH WP  L+VN+YE M+LLDL
Sbjct: 82  ------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDL 141

Query: 141 LKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENL 200
           +KKGH+EPEKKIG GI +FQ+R HP+WK++CFFL+RED++ DDFSFRKCVD ILPLPEN+
Sbjct: 142 IKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENM 201

Query: 201 KGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGR 234
           K         GGG+  GG   GGRGGG GGR R
Sbjct: 202 KTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFR 201

[Close]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match: gi|778655953|ref|XP_011660085.1| (PREDICTED: protein DCL, chloroplastic [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.0e-80
Identity = 185/244 (75.82%), Postives = 199/244 (81.56%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA--EDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERD 60
           MAEETIPQ    + EVTN+  EDMELE TEP A    S  EANEAA V NGDA SKRER 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDAS--EANEAAPVINGDATSKRER- 60

Query: 61  EESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           EESAD  V + KKQK+EKSVEE R+EK  GDGK EEEP PV++GPKSFRSS ELFD+FYK
Sbjct: 61  EESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYK 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
            LHHWP  LNVNQYE+M+L+DLLKKGH EPEKKIGCGIHSFQIR HP WK+KCFFLIRED
Sbjct: 121 ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIRED 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGGGG 240
           ES DDFSFRKCVDHILPLPEN KG+ DAN+A GGGKHR    GGGR GGGGGRGR GGGG
Sbjct: 181 ESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHR----GGGR-GGGGGRGR-GGGG 232

Query: 241 RWRN 243
           RWRN
Sbjct: 241 RWRN 232

[Close]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match: gi|659105915|ref|XP_008453205.1| (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 9.5e-79
Identity = 183/246 (74.39%), Postives = 201/246 (81.71%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA--EDMELENTEPGAEPKGSND--EANEAAKVTNGDANSKRE 60
           MAEETIPQ    + EVTN+  EDMELE T P    KGS+D  EA EAA V NGDANSKRE
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVP----KGSSDASEATEAAPVINGDANSKRE 60

Query: 61  RDEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           R EESAD  V + KKQK+EKSVEE R+EK  GDGK EEEP PV++GPKSFRSS ELFD+F
Sbjct: 61  R-EESADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           YK LH+WP  LNVNQYE+M+L+DLLKKGH EPEKKIGCGI +FQIR HP+WK+KCFFLIR
Sbjct: 121 YKILHNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGG 240
           EDES DDFSFRKCVDHILPLPEN K +SDAN+A GGGKHR    GGGR GGGGGRGR GG
Sbjct: 181 EDESADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHR----GGGR-GGGGGRGR-GG 232

Query: 241 GGRWRN 243
           GGRWRN
Sbjct: 241 GGRWRN 232

[Close]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match: gi|225457413|ref|XP_002284935.1| (PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera])

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-58
Identity = 147/246 (59.76%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 1   MAEETIPQPADN--NQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERD 60
           MAE  + +  +    +E  N +DM++E  EP ++P GS+   N    VTNGD+NSKR R+
Sbjct: 1   MAETVVSETPETVTERETANTQDMDVEAPEP-SQPNGSDSADN----VTNGDSNSKRGRE 60

Query: 61  E--ESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           E  E  D +    KKQK+EKSVEE R+EK + +     E G  ++GPK+F SS E+FDHF
Sbjct: 61  EAGEGEDANDAVTKKQKVEKSVEEERLEKLEAE---VVETGRFSLGPKTFGSSVEMFDHF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           +KFLH+WPA L+VN+YE MMLLDLLKKGH EP+KKIG GIH+FQ+R HP++K++CFF+IR
Sbjct: 121 FKFLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRGGG 240
           +DESVDDFSFRKCVDHI PLPEN+K +S+ NKA GGG  RGG GGGG GG GGGRGRGG 
Sbjct: 181 DDESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGG--RGGKGGGG-GGRGGGRGRGGR 235

Query: 241 GGRWRN 243
           GGR RN
Sbjct: 241 GGRGRN 235

[Close]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match: gi|645269311|ref|XP_008239940.1| (PREDICTED: protein DCL, chloroplastic [Prunus mume])

HSP 1 Score: 229.9 bits (585), Expect = 4.6e-57
Identity = 143/238 (60.08%), Postives = 177/238 (74.37%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA-EDMELENTEPGAEPK---GSNDEANEAAKVTNGDANSKRE 60
           MAE+T+ + A+ N E   A EDMELE +EP    K   G+N EA         +AN+KR 
Sbjct: 1   MAEKTVSELAETNSETAAAAEDMELEASEPAPAEKPDEGTNGEA---------EANAKRL 60

Query: 61  RDEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           RDEE ++G+   AKK K+EKS EE R+EK  G+GK   E G V++GPKSF SS E+FD+F
Sbjct: 61  RDEEGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           YK LH+WP  L+VN+YE ++LLDLLKKGHAEP+KKIG G+H+FQ+R HP++K++CFFLIR
Sbjct: 121 YKLLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVHAFQVRTHPLYKSRCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRG 235
           EDE+VDDFSFRKCVD ILPLPEN+K  SDANKA GG   +GG GGGG  GG  GRGRG
Sbjct: 181 EDEAVDDFSFRKCVDQILPLPENMKAHSDANKALGG---KGGRGGGGGRGGWRGRGRG 222

[Close]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match: gi|595848608|ref|XP_007209564.1| (hypothetical protein PRUPE_ppa011021mg [Prunus persica])

HSP 1 Score: 225.7 bits (574), Expect = 8.6e-56
Identity = 141/238 (59.24%), Postives = 176/238 (73.95%), Query Frame = 1 

Query: 1   MAEETIPQPADNNQEVTNA-EDMELENTEPGAEPK---GSNDEANEAAKVTNGDANSKRE 60
           MAE+T+ + A+ N E   A EDMELE +EP    K   G+N EA         +AN+KR 
Sbjct: 1   MAEKTVSELAETNSETAAAAEDMELEASEPAPAEKPDEGTNGEA---------EANAKRL 60

Query: 61  RDEESADGSVEEAKKQKMEKSVEEGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           RDEE ++G+   AKK K+EKS EE R+EK  G+GK   E G V++GPKSF SS E+FD+F
Sbjct: 61  RDEEGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           Y+ LH+WP  L+VN+YE ++LLDLLKKGHAEP+KKIG G+ +FQ+R HP++K++CFFLIR
Sbjct: 121 YRLLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGSGGGGRGGGGGGRGRG 235
           EDE+VDDFSFRKCVD ILPLPEN+K  SDANKA GG   +GG GGGG  GG  GRGRG
Sbjct: 181 EDETVDDFSFRKCVDQILPLPENMKAHSDANKALGG---KGGRGGGGGRGGWRGRGRG 222

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g07910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g07910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRN9_CUCSA7.0e-8175.82Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009730 PE=4 SV=1[more]
F6GT77_VITVI9.9e-5959.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06240 PE=4 SV=... [more]
M5WNA6_PRUPE6.0e-5659.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011021mg PE=4 SV=1[more]
A0A067KG87_JATCU7.6e-5154.37Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11631 PE=4 SV=1[more]
A0A0K9RNM1_SPIOL1.3e-5057.08Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046230 PE=4 SV=1[more]
BLAST of Cp4.1LG18g07910 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62440.16.2e-4450.70 Protein of unknown function (DUF3223)[more]
BLAST of Cp4.1LG18g07910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778655953|ref|XP_011660085.1|1.0e-8075.82PREDICTED: protein DCL, chloroplastic [Cucumis sativus][more]
gi|659105915|ref|XP_008453205.1|9.5e-7974.39PREDICTED: protein DCL, chloroplastic [Cucumis melo][more]
gi|225457413|ref|XP_002284935.1|1.4e-5859.76PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera][more]
gi|645269311|ref|XP_008239940.1|4.6e-5760.08PREDICTED: protein DCL, chloroplastic [Prunus mume][more]
gi|595848608|ref|XP_007209564.1|8.6e-5659.24hypothetical protein PRUPE_ppa011021mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021602Protein of unknown function DUF3223
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009308 amine metabolic process
biological_process GO:0006997 nucleus organization
biological_process GO:0051301 cell division
biological_process GO:0044702 single organism reproductive process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0009791 post-embryonic development
biological_process GO:0009790 embryo development
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0048825 cotyledon development
biological_process GO:0008150 biological_process
biological_process GO:0051302 regulation of cell division
biological_process GO:0006606 protein import into nucleus
biological_process GO:0000338 protein deneddylation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0017126 nucleologenesis
biological_process GO:0000741 karyogamy
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0048038 quinone binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g07910.1Cp4.1LG18g07910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021602Protein of unknown function DUF3223PFAMPF11523DUF3223coord: 118..190
score: 8.6
NoneNo IPR availableGENE3DG3DSA:3.10.450.40coord: 98..195
score: 4.0
NoneNo IPR availablePANTHERPTHR33415FAMILY NOT NAMEDcoord: 2..242
score: 5.6
NoneNo IPR availablePANTHERPTHR33415:SF3EMB514coord: 2..242
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g07910Cucsa.197690Cucumber (Gy14) v1cgycpeB0556
Cp4.1LG18g07910CmaCh11G001440Cucurbita maxima (Rimu)cmacpeB127
Cp4.1LG18g07910CmoCh11G001640Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g07910Cla019113Watermelon (97103) v1cpewmB373
Cp4.1LG18g07910Csa1G009730Cucumber (Chinese Long) v2cpecuB361
Cp4.1LG18g07910MELO3C017173Melon (DHL92) v3.5.1cpemeB328
Cp4.1LG18g07910ClCG06G016210Watermelon (Charleston Gray)cpewcgB336
Cp4.1LG18g07910CSPI01G02270Wild cucumber (PI 183967)cpecpiB361
Cp4.1LG18g07910Lsi06G014650Bottle gourd (USVL1VR-Ls)cpelsiB298
Cp4.1LG18g07910MELO3C017173.2Melon (DHL92) v3.6.1cpemedB386
Cp4.1LG18g07910CsaV3_1G002330Cucumber (Chinese Long) v3cpecucB0442
Cp4.1LG18g07910Bhi02G000230Wax gourdcpewgoB0459
Cp4.1LG18g07910CsGy1G002320Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g07910Carg17964Silver-seed gourdcarcpeB0646
Cp4.1LG18g07910Carg18187Silver-seed gourdcarcpeB0871
Cp4.1LG18g07910Carg10411Silver-seed gourdcarcpeB0508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g07910Cucumber (Chinese Long) v3cpecucB0448
Cp4.1LG18g07910Wax gourdcpewgoB0445
Cp4.1LG18g07910Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG18g07910Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG18g07910Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG18g07910Cucurbita pepo (Zucchini)cpecpeB353
Cp4.1LG18g07910Cucurbita pepo (Zucchini)cpecpeB361
Cp4.1LG18g07910Cucumber (Gy14) v1cgycpeB0254
Cp4.1LG18g07910Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g07910Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g07910Cucurbita moschata (Rifu)cmocpeB435
Cp4.1LG18g07910Wild cucumber (PI 183967)cpecpiB366
Cp4.1LG18g07910Cucumber (Chinese Long) v2cpecuB366
Cp4.1LG18g07910Watermelon (Charleston Gray)cpewcgB329
Cp4.1LG18g07910Watermelon (97103) v1cpewmB365
Cp4.1LG18g07910Melon (DHL92) v3.5.1cpemeB320
Cp4.1LG18g07910Melon (DHL92) v3.6.1cpemedB379
Cp4.1LG18g07910Silver-seed gourdcarcpeB0068