CmaCh11G001440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G001440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase D subunit 1-like protein
Location	Cma_Chr11 : 769297 .. 770944 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACCCTGTCTTCTTTAATCCGCTACTAGGGTTTTAGTTCTAAAGCCTGTCGGTTCCAACTAAAGAGTATACTTCGAAATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGTGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGGTGACTATGTCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGAATACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGGTATAATATTATGGTCTTCTTTTATCTGCTATCCTTCTCTGTTTTGTTAATGGAAAGGCTACGAATAGCATTGATAAAACTTTATTTTCTGCTAAATGCTGCTGATTTTGTTCATCATCGTCATTGCTTTAGCGTATAAAAGATCATGTAGCTAAAGAATAAAATAAAATTACTAAATGGGGTGGGGAACTGGGATCTCTGTACTCATGAAAGGGTGAATGGTTCATCAATTTTAGCAGAAGGGTGAATGCTCTACCAAAAATATTTTTTCGTCAATCAATTTGATATGAAGCTTTTACCATTTTTTATCTTTTGTGTCATGAATTACGGTCTTAATTATTGTAGTTGTTTTGATGGAGAATAAGCTTGTATTCATGGACAAGTTGGAATTTGAGACTTGTTCTTCAATATTCTCATGGAGATTGATGATGGTTGCCTCATAACTTGTAAAAGTTTGAGGTCTTTACTTCTCGGAGATTCGTAATGGGTACAAGAGATCTCTAAATTTCTTGCTTGGTGAATTACCTTATTAGGTATACTATGATTTGAGTTCATATGAAATGAAAACACTAAGGTCATTTGGATTCTTCTGTCAGATTGATTAGTGGTTGGCTTGATTTTATACAATTAACGTAGGCCAAATGGTTAAAAGTGACCTCCCTCATTCCATTAAGGCTCCACCATTCTTAGTCTTGAATGTCTTAAATGTGAAATTTGTTCTGTGGCAGTACGAGCTGATGGTGTTGCTGGATTTGATTAAGAAGGGGCATGTCGAACCGGACAAAAAGATCGGCTGTGGTGTTCGCGCTTGCCAAATTCGATACCATCCCATGTGGAAAAGCAAGTGCTTCTTCCTGATTCGGGAGGATGGGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCACTGCCTGAAAACTTGAAGACGATATCTGATGCAAACAGGGCATTGGGTGGTGGTAAGCACCGCGGTGGAGGAAGAGGAGGAGGGGGTAGGTGGAGAAACTGATGCTTTTCCCAAGCTTTCCAGTTTTCACCACATTGGAGTGGTGGAGTCAGTTTGTTTTCCTGCTAAGAATTTACGACCAAATCCCCCCAGCCCTCATGGCTCTTGTCCTCAAGGTCAGGGAAGAAGTTAGAGAAATGATTTGCTTACGCCCATAA

mRNA sequence

AGACCCTGTCTTCTTTAATCCGCTACTAGGGTTTTAGTTCTAAAGCCTGTCGGTTCCAACTAAAGAGTATACTTCGAAATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGTGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGGTGACTATGTCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGAATACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGTACGAGCTGATGGTGTTGCTGGATTTGATTAAGAAGGGGCATGTCGAACCGGACAAAAAGATCGGCTGTGGTGTTCGCGCTTGCCAAATTCGATACCATCCCATGTGGAAAAGCAAGTGCTTCTTCCTGATTCGGGAGGATGGGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCACTGCCTGAAAACTTGAAGACGATATCTGATGCAAACAGGGCATTGGGTGGTGGTAAGCACCGCGTTTTCACCACATTGGAGTGGTGGAGTCAGTTTGTTTTCCTGCTAAGAATTTACGACCAAATCCCCCCAGCCCTCATGGCTCTTGTCCTCAAGGTCAGGGAAGAAGTTAGAGAAATGATTTGCTTACGCCCATAA

Coding sequence (CDS)

ATGGCGGAAGAGACAATCCCTCAACTCGCAGAAAACGGTCCGGAGGTAACCAACTCCGCCGCCGAAGATATGGAACTTGAAAGCACAGAGCCGAAAGTATCAGGTGGTGATTCTGATGCAAACGAGGCCGCTCCAGTAACGAATGGTGATGCTAATTCCAAGCGTGAGAGGGAGGAAGAAGGCGCCGGTGACTATGTCGGAGAGGCGAAAAAGCCGAAGGTGGAGAAGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAAAGAGATGGGAAAGGCGAGGAAGAGCATGGTCCTGTGAGTTTAGGCCCGAAGAGCTTTGGATCATCGGTGGAGTTGTTCGAATACTTCTACAACTTTCTTCACTACTGGCCTGCCAACTTGAACGTGAACCAGTACGAGCTGATGGTGTTGCTGGATTTGATTAAGAAGGGGCATGTCGAACCGGACAAAAAGATCGGCTGTGGTGTTCGCGCTTGCCAAATTCGATACCATCCCATGTGGAAAAGCAAGTGCTTCTTCCTGATTCGGGAGGATGGGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCACTGCCTGAAAACTTGAAGACGATATCTGATGCAAACAGGGCATTGGGTGGTGGTAAGCACCGCGTTTTCACCACATTGGAGTGGTGGAGTCAGTTTGTTTTCCTGCTAAGAATTTACGACCAAATCCCCCCAGCCCTCATGGCTCTTGTCCTCAAGGTCAGGGAAGAAGTTAGAGAAATGATTTGCTTACGCCCATAA

Protein sequence

MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGSADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRVFTTLEWWSQFVFLLRIYDQIPPALMALVLKVREEVREMICLRP

Homology

[Close]

BLAST of CmaCh11G001440 vs. TrEMBL
Match: A0A0A0LRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.6e-83
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60

Query: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120
            A D V + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELF+YFY  L
Sbjct: 61  -ADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGGKHR 217
           ADDFSFRKCVDHILPLPEN K   DANRALGGGKHR
Sbjct: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHR 212

[Close]

BLAST of CmaCh11G001440 vs. TrEMBL
Match: F6GT77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06240 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.9e-62
Identity = 128/216 (59.26%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAE  + +  E   E   +  +DM++E+ EP    G   A+    VTNGD+NSKR REE 
Sbjct: 1   MAETVVSETPETVTERETANTQDMDVEAPEPSQPNGSDSADN---VTNGDSNSKRGREEA 60

Query: 61  GAGDYVGEA--KKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYN 120
           G G+   +A  KK KVEKSVEEERLEK+E +     E G  SLGPK+FGSSVE+F++F+ 
Sbjct: 61  GEGEDANDAVTKKQKVEKSVEEERLEKLEAE---VVETGRFSLGPKTFGSSVEMFDHFFK 120

Query: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180
           FLHYWPANL+VN+YE M+LLDL+KKGH EPDKKIG G+ A Q+RYHP++KS+CFF+IR+D
Sbjct: 121 FLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDD 180

Query: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGGGK 215
            S DDFSFRKCVDHI PLPEN+K  S+ N+ALGGG+
Sbjct: 181 ESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGGR 210

[Close]

BLAST of CmaCh11G001440 vs. TrEMBL
Match: M5WNA6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011021mg PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-61
Identity = 136/214 (63.55%), Postives = 166/214 (77.57%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDA--NSKRERE 60
           MAE+T+ +LAE   E T +AAEDMELE++EP      + A +    TNG+A  N+KR R+
Sbjct: 1   MAEKTVSELAETNSE-TAAAAEDMELEASEP------APAEKPDEGTNGEAEANAKRLRD 60

Query: 61  EEGAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYN 120
           EEG+      AKK KVEKS EEERLEK+   G+G+E  G VSLGPKSFGSSVE+F+YFY 
Sbjct: 61  EEGSEGNDAVAKKTKVEKSPEEERLEKL---GEGKES-GRVSLGPKSFGSSVEMFDYFYR 120

Query: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180
            LHYWP +L+VN+YE +VLLDL+KKGH EPDKKIG GV+A Q+R HP++KS+CFFLIRED
Sbjct: 121 LLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIRED 180

Query: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGG 213
            + DDFSFRKCVD ILPLPEN+K  SDAN+ALGG
Sbjct: 181 ETVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

[Close]

BLAST of CmaCh11G001440 vs. TrEMBL
Match: V4TKC0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022133mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 129/218 (59.17%), Postives = 160/218 (73.39%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEE   +L E+     N+AAEDM+LE       GG++          GDAN+KR R+++
Sbjct: 1   MAEEAAKELTES-----NAAAEDMDLE-------GGEN---------GGDANAKRARDDD 60

Query: 61  GAGDYVGE-AKKPKV---EKSVEEERLEKVE-RDGKGEEEHGPVSLGPKSFGSSVELFEY 120
             G+  G+ +KK K+   EKSVEEERLEK E  +G G      V LGPK FGSS+E+F+Y
Sbjct: 61  DGGEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGR-----VKLGPKEFGSSIEMFDY 120

Query: 121 FYNFLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLI 180
           FY FLH+WP NLNVN+YE MVLLDL+KKGH EPDKKIG G++A Q+RYHP +KS+CFFLI
Sbjct: 121 FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 180

Query: 181 REDGSADDFSFRKCVDHILPLPENLKTISDANRALGGG 214
           RED +ADDFSFRKCVDH+LPLPE++K  SDAN+ALGGG
Sbjct: 181 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKALGGG 192

[Close]

BLAST of CmaCh11G001440 vs. TrEMBL
Match: A0A067EKF0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027552mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 129/218 (59.17%), Postives = 160/218 (73.39%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEE   +L E+     N+AAEDM+LE       GG++          GDAN+KR R+++
Sbjct: 1   MAEEAAKELTES-----NAAAEDMDLE-------GGEN---------GGDANAKRARDDD 60

Query: 61  GAGDYVGE-AKKPKV---EKSVEEERLEKVE-RDGKGEEEHGPVSLGPKSFGSSVELFEY 120
             G+  G+ +KK K+   EKSVEEERLEK E  +G G      V LGPK FGSS+E+F+Y
Sbjct: 61  DGGEGNGDVSKKQKIDEDEKSVEEERLEKKEVVNGSGR-----VKLGPKEFGSSIEMFDY 120

Query: 121 FYNFLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLI 180
           FY FLH+WP NLNVN+YE MVLLDL+KKGH EPDKKIG G++A Q+RYHP +KS+CFFLI
Sbjct: 121 FYKFLHFWPPNLNVNKYEHMVLLDLLKKGHPEPDKKIGGGIQAFQVRYHPTYKSRCFFLI 180

Query: 181 REDGSADDFSFRKCVDHILPLPENLKTISDANRALGGG 214
           RED +ADDFSFRKCVDH+LPLPE++K  SDAN+ALGGG
Sbjct: 181 REDETADDFSFRKCVDHMLPLPEDMKVKSDANKALGGG 192

[Close]

BLAST of CmaCh11G001440 vs. TAIR10
Match: AT5G62440.1 (AT5G62440.1 Protein of unknown function (DUF3223))

HSP 1 Score: 193.0 bits (489), Expect = 2.3e-49
Identity = 103/200 (51.50%), Postives = 125/200 (62.50%), Query Frame = 1


Query: 15  EVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEEGAGDYVGEAKKPKV 74
           EV      DME+E+  PK   GD                KREREE    +  GE+KK KV
Sbjct: 14  EVNPDQKVDMEVETATPKAETGDE---------------KREREETEEEENGGESKKQKV 73

Query: 75  EKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFLHYWPANLNVNQYEL 134
            +                EE+ GPV LGPK F +SV +F+YF  FLH+WP +L+VN+YE 
Sbjct: 74  GE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEH 133

Query: 135 MVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGSADDFSFRKCVDHIL 194
           MVLLDLIKKGH EP+KKIG G++  Q+R HPMWKS+CFFL+RED +ADDFSFRKCVD IL
Sbjct: 134 MVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQIL 182

Query: 195 PLPENLKTISDANRALGGGK 215
           PLPEN+KT        GGG+
Sbjct: 194 PLPENMKTPGANGNGHGGGR 182

[Close]

BLAST of CmaCh11G001440 vs. TAIR10
Match: AT1G45230.1 (AT1G45230.1 Protein of unknown function (DUF3223))

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 47/163 (28.83%), Postives = 83/163 (50.92%), Query Frame = 1


Query: 49  GDANSKRER----EEEGAGDYVGEA--------KKPKV--EKSVEEERLEKVERDGKGEE 108
           GD+ S R R      E  G  +G +        ++P++  E+S EEE  E+ E + +G+E
Sbjct: 38  GDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEE-EEEEENSEGDE 97

Query: 109 EHGPVSLGPKSFGSSVELFEYFYNFLHYWP-ANLN-VNQYELMVLLDLIKKGHVEPDKKI 168
               V    K    +V L  +    LH    AN + ++      +++++   H E +KKI
Sbjct: 98  F---VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKI 157

Query: 169 GCGVRACQIRYHPMWKS-KCFFLIREDGSADDFSFRKCVDHIL 195
           GCG+    + +HP ++S +C F++R+DG   DFS+ KC+  ++
Sbjct: 158 GCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of CmaCh11G001440 vs. NCBI nr
Match: gi|659105915|ref|XP_008453205.1| (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 1.4e-83
Identity = 166/216 (76.85%), Postives = 181/216 (83.80%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQL    PEVTNS  EDMELE+T PK S   S+A EAAPV NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREES 60

Query: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120
            A D VG+ KK K+EKSVEEER+EK+  DGK EEE  PVSLGPKSF SSVELF+YFY  L
Sbjct: 61  -ADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180
           H WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG++A QIR+HP+WKSKCFFLIRED S
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGGKHR 217
           ADDFSFRKCVDHILPLPEN K  SDANRALGGGKHR
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHR 212

[Close]

BLAST of CmaCh11G001440 vs. NCBI nr
Match: gi|778655953|ref|XP_011660085.1| (PREDICTED: protein DCL, chloroplastic [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 5.2e-83
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60

Query: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYNFL 120
            A D V + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELF+YFY  L
Sbjct: 61  -ADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGGKHR 217
           ADDFSFRKCVDHILPLPEN K   DANRALGGGKHR
Sbjct: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHR 212

[Close]

BLAST of CmaCh11G001440 vs. NCBI nr
Match: gi|225457413|ref|XP_002284935.1| (PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 128/216 (59.26%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60
           MAE  + +  E   E   +  +DM++E+ EP    G   A+    VTNGD+NSKR REE 
Sbjct: 1   MAETVVSETPETVTERETANTQDMDVEAPEPSQPNGSDSADN---VTNGDSNSKRGREEA 60

Query: 61  GAGDYVGEA--KKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYN 120
           G G+   +A  KK KVEKSVEEERLEK+E +     E G  SLGPK+FGSSVE+F++F+ 
Sbjct: 61  GEGEDANDAVTKKQKVEKSVEEERLEKLEAE---VVETGRFSLGPKTFGSSVEMFDHFFK 120

Query: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180
           FLHYWPANL+VN+YE M+LLDL+KKGH EPDKKIG G+ A Q+RYHP++KS+CFF+IR+D
Sbjct: 121 FLHYWPANLDVNKYEHMMLLDLLKKGHTEPDKKIGGGIHAFQVRYHPVFKSRCFFVIRDD 180

Query: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGGGK 215
            S DDFSFRKCVDHI PLPEN+K  S+ N+ALGGG+
Sbjct: 181 ESVDDFSFRKCVDHISPLPENMKAKSEVNKALGGGR 210

[Close]

BLAST of CmaCh11G001440 vs. NCBI nr
Match: gi|595848608|ref|XP_007209564.1| (hypothetical protein PRUPE_ppa011021mg [Prunus persica])

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 136/214 (63.55%), Postives = 166/214 (77.57%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDA--NSKRERE 60
           MAE+T+ +LAE   E T +AAEDMELE++EP      + A +    TNG+A  N+KR R+
Sbjct: 1   MAEKTVSELAETNSE-TAAAAEDMELEASEP------APAEKPDEGTNGEAEANAKRLRD 60

Query: 61  EEGAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYN 120
           EEG+      AKK KVEKS EEERLEK+   G+G+E  G VSLGPKSFGSSVE+F+YFY 
Sbjct: 61  EEGSEGNDAVAKKTKVEKSPEEERLEKL---GEGKES-GRVSLGPKSFGSSVEMFDYFYR 120

Query: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180
            LHYWP +L+VN+YE +VLLDL+KKGH EPDKKIG GV+A Q+R HP++KS+CFFLIRED
Sbjct: 121 LLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIRED 180

Query: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGG 213
            + DDFSFRKCVD ILPLPEN+K  SDAN+ALGG
Sbjct: 181 ETVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

[Close]

BLAST of CmaCh11G001440 vs. NCBI nr
Match: gi|645269311|ref|XP_008239940.1| (PREDICTED: protein DCL, chloroplastic [Prunus mume])

HSP 1 Score: 243.8 bits (621), Expect = 3.3e-61
Identity = 136/214 (63.55%), Postives = 165/214 (77.10%), Query Frame = 1


Query: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDA--NSKRERE 60
           MAE+T+ +LAE   E T +AAEDMELE++EP      + A +    TNG+A  N+KR R+
Sbjct: 1   MAEKTVSELAETNSE-TAAAAEDMELEASEP------APAEKPDEGTNGEAEANAKRLRD 60

Query: 61  EEGAGDYVGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFEYFYN 120
           EEG+      AKK KVEKS EEERLEK+   G+G+E  G VSLGPKSFGSSVE+F+YFY 
Sbjct: 61  EEGSEGNDAVAKKTKVEKSPEEERLEKL---GEGKES-GRVSLGPKSFGSSVEMFDYFYK 120

Query: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180
            LHYWP +L+VN+YE +VLLDL+KKGH EPDKKIG GV A Q+R HP++KS+CFFLIRED
Sbjct: 121 LLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVHAFQVRTHPLYKSRCFFLIRED 180

Query: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGG 213
            + DDFSFRKCVD ILPLPEN+K  SDAN+ALGG
Sbjct: 181 EAVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

The following BLAST results are available for this feature:

BLAST of CmaCh11G001440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRN9_CUCSA	3.6e-83	76.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009730 PE=4 SV=1	[more]
F6GT77_VITVI	7.9e-62	59.26	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06240 PE=4 SV=...	[more]
M5WNA6_PRUPE	1.8e-61	63.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011021mg PE=4 SV=1	[more]
V4TKC0_9ROSI	1.5e-57	59.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022133mg PE=4 SV=1	[more]
A0A067EKF0_CITSI	1.5e-57	59.17	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027552mg PE=4 SV=1	[more]

BLAST of CmaCh11G001440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62440.1	2.3e-49	51.50	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	1.4e-06	28.83	Protein of unknown function (DUF3223)	[more]

BLAST of CmaCh11G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105915\|ref\|XP_008453205.1\|	1.4e-83	76.85	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]
gi\|778655953\|ref\|XP_011660085.1\|	5.2e-83	76.39	PREDICTED: protein DCL, chloroplastic [Cucumis sativus]	[more]
gi\|225457413\|ref\|XP_002284935.1\|	1.1e-61	59.26	PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera]	[more]
gi\|595848608\|ref\|XP_007209564.1\|	2.5e-61	63.55	hypothetical protein PRUPE_ppa011021mg [Prunus persica]	[more]
gi\|645269311\|ref\|XP_008239940.1\|	3.3e-61	63.55	PREDICTED: protein DCL, chloroplastic [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021602	Protein of unknown function DUF3223

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0051301	cell division
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006997	nucleus organization
biological_process	GO:0003006	developmental process involved in reproduction
biological_process	GO:0009790	embryo development
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001440.1	CmaCh11G001440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021602	Protein of unknown function DUF3223	PFAM	PF11523	DUF3223	coord: 118..190 score: 1.2
None	No IPR available	GENE3D	G3DSA:3.10.450.40		coord: 98..195 score: 7.1
None	No IPR available	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..216 score: 3.4
None	No IPR available	PANTHER	PTHR33415:SF3	EMB514	coord: 1..216 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G001440	Cucsa.197690	Cucumber (Gy14) v1	cgycmaB0578
CmaCh11G001440	Cla019113	Watermelon (97103) v1	cmawmB136
CmaCh11G001440	Csa1G009730	Cucumber (Chinese Long) v2	cmacuB097
CmaCh11G001440	MELO3C017173	Melon (DHL92) v3.5.1	cmameB106
CmaCh11G001440	ClCG06G016210	Watermelon (Charleston Gray)	cmawcgB127
CmaCh11G001440	CSPI01G02270	Wild cucumber (PI 183967)	cmacpiB098
CmaCh11G001440	CmoCh11G001640	Cucurbita moschata (Rifu)	cmacmoB118
CmaCh11G001440	Lsi06G014650	Bottle gourd (USVL1VR-Ls)	cmalsiB129
CmaCh11G001440	Cp4.1LG18g07910	Cucurbita pepo (Zucchini)	cmacpeB127
CmaCh11G001440	MELO3C017173.2	Melon (DHL92) v3.6.1	cmamedB113
CmaCh11G001440	CsaV3_1G002330	Cucumber (Chinese Long) v3	cmacucB0112
CmaCh11G001440	Cla97C06G125800	Watermelon (97103) v2	cmawmbB131
CmaCh11G001440	Bhi02G000230	Wax gourd	cmawgoB0151
CmaCh11G001440	CsGy1G002320	Cucumber (Gy14) v2	cgybcmaB040
CmaCh11G001440	Carg18187	Silver-seed gourd	carcmaB0861
CmaCh11G001440	Carg17964	Silver-seed gourd	carcmaB0642
CmaCh11G001440	Carg10411	Silver-seed gourd	carcmaB0512

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G001440	Cucumber (Chinese Long) v3	cmacucB0119
CmaCh11G001440	Cucumber (Chinese Long) v3	cmacucB0159
CmaCh11G001440	Watermelon (97103) v2	cmawmbB121
CmaCh11G001440	Watermelon (97103) v2	cmawmbB154
CmaCh11G001440	Wax gourd	cmawgoB0102
CmaCh11G001440	Wax gourd	cmawgoB0136
CmaCh11G001440	Cucurbita maxima (Rimu)	cmacmaB079
CmaCh11G001440	Cucurbita maxima (Rimu)	cmacmaB129
CmaCh11G001440	Cucurbita maxima (Rimu)	cmacmaB143
CmaCh11G001440	Cucumber (Gy14) v1	cgycmaB0261
CmaCh11G001440	Cucurbita moschata (Rifu)	cmacmoB107
CmaCh11G001440	Cucurbita moschata (Rifu)	cmacmoB127
CmaCh11G001440	Cucurbita moschata (Rifu)	cmacmoB140
CmaCh11G001440	Cucurbita moschata (Rifu)	cmacmoB158
CmaCh11G001440	Wild cucumber (PI 183967)	cmacpiB104
CmaCh11G001440	Cucumber (Chinese Long) v2	cmacuB105
CmaCh11G001440	Melon (DHL92) v3.5.1	cmameB089
CmaCh11G001440	Watermelon (Charleston Gray)	cmawcgB080
CmaCh11G001440	Watermelon (Charleston Gray)	cmawcgB118
CmaCh11G001440	Watermelon (97103) v1	cmawmB119
CmaCh11G001440	Cucurbita pepo (Zucchini)	cmacpeB142
CmaCh11G001440	Cucurbita pepo (Zucchini)	cmacpeB149
CmaCh11G001440	Bottle gourd (USVL1VR-Ls)	cmalsiB109
CmaCh11G001440	Bottle gourd (USVL1VR-Ls)	cmalsiB111
CmaCh11G001440	Cucumber (Gy14) v2	cgybcmaB046
CmaCh11G001440	Melon (DHL92) v3.6.1	cmamedB087
CmaCh11G001440	Melon (DHL92) v3.6.1	cmamedB097
CmaCh11G001440	Silver-seed gourd	carcmaB0063
CmaCh11G001440	Silver-seed gourd	carcmaB0539