Carg17964 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17964
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein DCL, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_114 : 451745 .. 454113 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACGATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAACCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAGTTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGGTTTCATATTATGGACTTCTTTTTAATTTGCTATCGTCCTCTGTTTTGTTAATTGAAAGGTTAAGTTGAGAATGATGCTTATGAAATTTTATGTTAGTTTTAGAACGCAGAGCTGGAACTTGATTGACATATTTTCTTTTTTCCCAATATTGCTGTTATGGTTTATCATCATCATTATTTTAATTTGTGAAAGTTACATCTTTCTGAAGGGAAAACGAATTGCAAAAGGAGGTGTAGATTTAGGTATCTTGATCCTCATGAATGGTGAACAATTTTAGCAGGACTTTTTGTTCTAGTCACTTGTTTGAGAAACTGCTATAATTGTGTACATAATAGAATCAGAGAGGTGACATTCTTCAATATTCTCATGAGATTAATGATGATTGGTATCAGTTTTGCCCAAAATCCATTTACAGATTTAGATGTTAAAACAATTAATCAAAGAATCCCACCCTGGATGAATAAATTTATTTCTATCTGTGAATCTACTGTCTTGACCTTATTTTCTCATTGAAGAATTTCTTTTAGCTGTTTTCTTTTTTTTTTCTCTTTTTTTTTTTTTTTGCATTGTTTTGCTGTTATTCTTTATGATTCCCTTCTTATTCTTGATTGATGTTAGTGGAAGAAATAGATATGCTATATCTATTTATTGCTTTCTTTCTAGCATATCCTGTGATGTAGCAAATTATACATACAAGTATGGCTTAACTCTTCAAAACCAAGAGCCGCACCAAGCCATTGAGCATGTCCTTATATGGTATAATTTTGCAGCCCAAAAGGGGAAGTAATAATTAGTGTTTAGAAATCCATGTATTCATGGCCGGTTACAGGGTGTGATCGCTTAGTTATGAAAAAAATCCTTAAATTGAAAGACAGTTGGGTGTTATTATTTGTATTCAAATATTATTTCTACTAAAGTCTATTCCTTTAGCACTTAGTGTAACAGCCCAAACCAACCACCGCTAGCCCATATTGTCCTCTTTAGATTTTTCTTCAAGGTTTTTACGACGCATGTACTAGGCAGAGATTTCCACACCCTTATAAGGAATGTGTTACTCCTCTTTTCAACTGATGTGAGATCTCACAATCCCACCTCCCTTAGAGCCCGGCGTCCTCGTTGGCACACCATCCGATGTCTGGCTTTGATACCATTTGTAACCGCCCAAGCCCACCACTACAAATATTGTCCTCTTTGGACTTTCTCTTTTGGGCTTCCCTTCTAGGTTTTAAAATGTGTCTACTAGGAAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTTTTCTTTCCAACTGACGTGGGACCTCACATTTAGCCTACTTTACTATAACTTGGTTAAACATTAGTAATATCTTCTGTAGGTTTGTATTCTTGTTCTGTGTTTGAATAGTAATATTTAAAAGAAAAAGAGTGTATTTCTTTAGGGGCCCAGTATTATCTTGTCGGTCATGTTTTTCGTCTAGTCAACCGCCATTCTAAGGTGAAAAACTCTACTAATTTTACCCCCTAAGTCATTGAAAACATCTATAATTGATCAAATTTACACGATGAATAATAAATTGATTCATGGTAAAACTATTTGCATATTGTGGAGGCATTGATTCTGTTGTTGATTCAATATTTGATATCGGTCTGTGTGGCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGCGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGTGGTGGCAAGCACCGCGGTGGCGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGA

mRNA sequence

ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACGATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAACCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAGTTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGCGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGTGGTGGCAAGCACCGCGGTGGCGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGA

Coding sequence (CDS)

ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACGATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAACCGAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAGTTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGCGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGTGGTGGCAAGCACCGCGGTGGCGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGAGGGGGTAGGTGGAGAAACTGA

Protein sequence

MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEESADGSVEEVKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGGGGRGGGGGGRGRGGGGGGRWRN

Homology

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BLAST of Carg17964 vs. NCBI nr
Match: XP_023515551.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.4 bits (1030), Expect = 2.2e-108
Identity = 204/214 (95.33%), Postives = 206/214 (96.26%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEE 60
           MAEETIPQPADN+QEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRER+EE
Sbjct: 1   MAEETIPQPADNNQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERDEE 60

Query: 61  SADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120
           SADGSVEE KKQKME XXXX      QGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL
Sbjct: 61  SADGSVEEAKKQKMEKXXXXGRIEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120

Query: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES 180
           HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES
Sbjct: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES 180

Query: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGGK 215
           VDDFSFRKCVDHILPLPENLKGRSDANKAFGGGK
Sbjct: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGGK 214

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BLAST of Carg17964 vs. NCBI nr
Match: XP_022921344.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 394.8 bits (1013), Expect = 2.1e-106
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEE 60
           MAEETIPQPA+N+QEVTNAEDMELENTEP AEPKGSNDEANEAAKVTNGDANSKREREEE
Sbjct: 1   MAEETIPQPAENNQEVTNAEDMELENTEPVAEPKGSNDEANEAAKVTNGDANSKREREEE 60

Query: 61  SADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120
           SADGSVEEVKKQKM XXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL
Sbjct: 61  SADGSVEEVKKQKMXXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120

Query: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES 180
           HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES
Sbjct: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES 180

Query: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG
Sbjct: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 213

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BLAST of Carg17964 vs. NCBI nr
Match: XP_022987201.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima])

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 198/213 (92.96%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEE 60
           MAEETIPQPADN+QEVTNAEDMELENTEPGAEPKGSNDEANEA+K+TNGDANSKREREEE
Sbjct: 1   MAEETIPQPADNNQEVTNAEDMELENTEPGAEPKGSNDEANEASKITNGDANSKREREEE 60

Query: 61  SADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120
           SADG           XXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL
Sbjct: 61  SADGXXXXXXXXXXXXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFL 120

Query: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDES 180
           HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHP+WKNKCFFLIREDES
Sbjct: 121 HHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPMWKNKCFFLIREDES 180

Query: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG
Sbjct: 181 VDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 213

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BLAST of Carg17964 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 3.7e-79
Identity = 156/218 (71.56%), Postives = 182/218 (83.49%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNA--EDMELENTEPGAEPKGSN--DEANEAAKVTNGDANSKRE 60
           MAEET PQ A+ND EVTN+  EDMELE +EPGAEPKG N   EANEAA  TNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REEESADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           REEE+AD ++ E KK K+E           +GDGKG+E+ GPV++GPKSF SS E+FD+F
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           YKFLH+WPA LN+N+YE+M+LL+LLKKGH EPEKKIGCGIH+FQIRNHP +K+KC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGK 215
           EDESVDDFSFRKCVDHILPLPENLK +SDAN+A GG K
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANRALGGCK 218

[Close]

BLAST of Carg17964 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 6.1e-74
Identity = 151/216 (69.91%), Postives = 170/216 (78.70%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTN--AEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERE 60
           MAEETIPQ A+N  EVTN  AEDMELE+TEP  +  G + +ANEAA VTNGDANSKRERE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEP--KVSGGDSDANEAAPVTNGDANSKRERE 60

Query: 61  EESADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           EE AD    E KK K+E           + DGKGEEE GPV++GPKSF SS ELFD+FY 
Sbjct: 61  EEGADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYN 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
           FLH+WPA LNVNQYE M+LLDL+KKGH EP+KKIGCG+ + QIR HP+WK+KCFFLIRED
Sbjct: 121 FLHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIRED 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGK 215
            S DDFSFRKCVDHILPLPENLK  SDAN+A GGGK
Sbjct: 181 GSADDFSFRKCVDHILPLPENLKTISDANRALGGGK 214

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BLAST of Carg17964 vs. TAIR10
Match: AT5G62440.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-42
Identity = 72/105 (68.57%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 97  GPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGI 156
           GPV +GPK F +S  +FD+F KFLH WP  L+VN+YE M+LLDL+KKGH+EPEKKIG GI
Sbjct: 65  GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGI 124

Query: 157 HSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLK 202
            +FQ+R HP+WK++CFFL+RED++ DDFSFRKCVD ILPLPEN+K
Sbjct: 125 KTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

[Close]

BLAST of Carg17964 vs. TAIR10
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 116 FYKFLHHWPAYLN---VNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWK-NKC 175
           F + + H   Y N   ++   +  ++++L   H E EKKIGCGI    + +HP ++ ++C
Sbjct: 114 FVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRC 173

Query: 176 FFLIREDESVDDFSFRKCVDHIL 195
            F++R+D  V DFS+ KC+  ++
Sbjct: 174 MFIVRKDGEVVDFSYWKCIKGLI 196

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BLAST of Carg17964 vs. Swiss-Prot
Match: sp|Q8L557|EM514_ARATH (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.6e-41
Identity = 72/105 (68.57%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 97  GPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGI 156
           GPV +GPK F +S  +FD+F KFLH WP  L+VN+YE M+LLDL+KKGH+EPEKKIG GI
Sbjct: 65  GPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGI 124

Query: 157 HSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLK 202
            +FQ+R HP+WK++CFFL+RED++ DDFSFRKCVD ILPLPEN+K
Sbjct: 125 KTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

[Close]

BLAST of Carg17964 vs. Swiss-Prot
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 116 FYKFLHHWPAYLN---VNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWK-NKC 175
           F + + H   Y N   ++   +  ++++L   H E EKKIGCGI    + +HP ++ ++C
Sbjct: 114 FVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRC 173

Query: 176 FFLIREDESVDDFSFRKCVDHIL 195
            F++R+D  V DFS+ KC+  ++
Sbjct: 174 MFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Carg17964 vs. Swiss-Prot
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 137 LLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKN-KCFFLIREDESVDDFSFRKCVDHIL 195
           +L  L   H E +KKIG G+    +  HP ++N +C F++R+D    DFS+ KC+  ++
Sbjct: 143 ILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLI 201

[Close]

BLAST of Carg17964 vs. TrEMBL
Match: tr|A0A0A0LRN9|A0A0A0LRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.8e-73
Identity = 155/215 (72.09%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNA--EDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKRERE 60
           MAEETIPQ    D EVTN+  EDMELE TEP A    S  EANEAA V NGDA SKRER 
Sbjct: 1   MAEETIPQ---LDPEVTNSGTEDMELETTEPKASTDAS--EANEAAPVINGDATSKRER- 60

Query: 61  EESADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           EESAD  V + KKQK+E            GDGK EEEP PV++GPKSFRSS ELFD+FYK
Sbjct: 61  EESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYK 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
            LHHWP  LNVNQYE+M+L+DLLKKGH EPEKKIGCGIHSFQIR HP WK+KCFFLIRED
Sbjct: 121 ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIRED 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           ES DDFSFRKCVDHILPLPEN KG+ DAN+A GGG
Sbjct: 181 ESADDFSFRKCVDHILPLPENFKGKFDANRALGGG 209

[Close]

BLAST of Carg17964 vs. TrEMBL
Match: tr|A0A1S3BWT9|A0A1S3BWT9_CUCME (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 7.1e-71
Identity = 153/217 (70.51%), Postives = 169/217 (77.88%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNA--EDMELENTEPGAEPKGSND--EANEAAKVTNGDANSKRE 60
           MAEETIPQ    D EVTN+  EDMELE T     PKGS+D  EA EAA V NGDANSKRE
Sbjct: 1   MAEETIPQ---LDPEVTNSGTEDMELETT----VPKGSSDASEATEAAPVINGDANSKRE 60

Query: 61  REEESADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           R EESAD  V + KKQK+E            GDGK EEEP PV++GPKSFRSS ELFD+F
Sbjct: 61  R-EESADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           YK LH+WP  LNVNQYE+M+L+DLLKKGH EPEKKIGCGI +FQIR HP+WK+KCFFLIR
Sbjct: 121 YKILHNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           EDES DDFSFRKCVDHILPLPEN K +SDAN+A GGG
Sbjct: 181 EDESADDFSFRKCVDHILPLPENFKAKSDANRALGGG 209

[Close]

BLAST of Carg17964 vs. TrEMBL
Match: tr|M5WNA6|M5WNA6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.7e-52
Identity = 118/216 (54.63%), Postives = 153/216 (70.83%), Query Frame = 0


Query: 1   MAEETIPQPAD-NDQEVTNAEDMELENTEPGAEPK---GSNDEANEAAKVTNGDANSKRE 60
           MAE+T+ + A+ N +    AEDMELE +EP    K   G+N EA         +AN+KR 
Sbjct: 1   MAEKTVSELAETNSETAAAAEDMELEASEPAPAEKPDEGTNGEA---------EANAKRL 60

Query: 61  REEESADGSVEEVKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHF 120
           R+EE ++G+    KK K+E            G+GK   E G V++GPKSF SS E+FD+F
Sbjct: 61  RDEEGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIR 180
           Y+ LH+WP  L+VN+YE ++LLDLLKKGHAEP+KKIG G+ +FQ+R HP++K++CFFLIR
Sbjct: 121 YRLLHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIR 180

Query: 181 EDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGG 213
           EDE+VDDFSFRKCVD ILPLPEN+K  SDANKA GG
Sbjct: 181 EDETVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

[Close]

BLAST of Carg17964 vs. TrEMBL
Match: tr|A0A2P5C8I2|A0A2P5C8I2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.5e-48
Identity = 110/215 (51.16%), Postives = 142/215 (66.05%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEE 60
           MAE++  + A+ + E  N+   E++  E G+EP                  NSKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMD-LEAGSEP------------------NSKRAREEG 60

Query: 61  SADGSVEE--VKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           +  G   +   KKQK+            +  G+G+EE GPV +GPK+F SS E+FD+ YK
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLDKKLGEGDEESGPVKLGPKTFGSSVEMFDYLYK 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
           FLH+WP  LNVN+YE M+LLDLLKKGH EP+KKIG GI +FQ+R HP+WK++CFFLIR D
Sbjct: 121 FLHYWPTNLNVNKYEHMVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIRND 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           ES DDFSFRKCVD ILPLPE++K +S+ANK  GGG
Sbjct: 181 ESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

[Close]

BLAST of Carg17964 vs. TrEMBL
Match: tr|A0A2P5F752|A0A2P5F752_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 109/215 (50.70%), Postives = 142/215 (66.05%), Query Frame = 0


Query: 1   MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKVTNGDANSKREREEE 60
           MAE++  + A+ + E  N+   E++  E G+EP                  NSKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMD-LEAGSEP------------------NSKRAREEG 60

Query: 61  SADGSVEE--VKKQKMEXXXXXXXXXXXQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYK 120
           +  G   +   KKQK+            +  G+G+EE GPV +GPK+F SS E+FD+ YK
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLEKKLGEGDEESGPVKLGPKTFGSSVEMFDYLYK 120

Query: 121 FLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIRED 180
           FLH+WP  LNVN+YE ++LLDLLKKGH EP+KKIG GI +FQ+R HP+WK++CFFLIR D
Sbjct: 121 FLHYWPTNLNVNKYEHVVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIRND 180

Query: 181 ESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGG 214
           ES DDFSFRKCVD ILPLPE++K +S+ANK  GGG
Sbjct: 181 ESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

The following BLAST results are available for this feature:

BLAST of Carg17964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515551.1	2.2e-108	95.33	protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921344.1	2.1e-106	98.12	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]
XP_022987201.1	1.7e-100	92.96	protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima]	[more]
XP_022135230.1	3.7e-79	71.56	protein EMBRYO DEFECTIVE 514 [Momordica charantia]	[more]
XP_022933555.1	6.1e-74	69.91	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]

BLAST of Carg17964 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62440.1	2.0e-42	68.57	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	2.4e-08	32.53	Protein of unknown function (DUF3223)	[more]

BLAST of Carg17964 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L557\|EM514_ARATH	3.6e-41	68.57	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
sp\|Q9C642\|DCL_ARATH	4.4e-07	32.53	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
sp\|Q42463\|DCL_SOLLC	2.7e-04	35.59	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]

BLAST of Carg17964 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRN9\|A0A0A0LRN9_CUCSA	5.8e-73	72.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1	[more]
tr\|A0A1S3BWT9\|A0A1S3BWT9_CUCME	7.1e-71	70.51	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1	[more]
tr\|M5WNA6\|M5WNA6_PRUPE	9.7e-52	54.63	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1	[more]
tr\|A0A2P5C8I2\|A0A2P5C8I2_PARAD	8.5e-48	51.16	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE...	[more]
tr\|A0A2P5F752\|A0A2P5F752_9ROSA	2.5e-47	50.70	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17964-RA	Carg17964-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.40		coord: 95..194 e-value: 8.7E-28 score: 98.5
None	No IPR available	PFAM	PF11523	DUF3223	coord: 118..190 e-value: 7.5E-22 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..241
None	No IPR available	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..240
None	No IPR available	PANTHER	PTHR33415:SF3	EMB514	coord: 1..240

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17964	Cla019113	Watermelon (97103) v1	carwmB0460
Carg17964	Csa1G009730	Cucumber (Chinese Long) v2	carcuB0493
Carg17964	MELO3C017173	Melon (DHL92) v3.5.1	carmeB0468
Carg17964	ClCG06G016210	Watermelon (Charleston Gray)	carwcgB0450
Carg17964	CSPI01G02270	Wild cucumber (PI 183967)	carcpiB0499
Carg17964	Cucsa.197690	Cucumber (Gy14) v1	carcgyB0533
Carg17964	CmaCh11G001440	Cucurbita maxima (Rimu)	carcmaB0642
Carg17964	CmoCh11G001640	Cucurbita moschata (Rifu)	carcmoB0624
Carg17964	Lsi06G014650	Bottle gourd (USVL1VR-Ls)	carlsiB419
Carg17964	Cp4.1LG18g07910	Cucurbita pepo (Zucchini)	carcpeB0646
Carg17964	CsGy1G002320	Cucumber (Gy14) v2	carcgybB0470
Carg17964	MELO3C017173.2	Melon (DHL92) v3.6.1	carmedB0471
Carg17964	CsaV3_1G002330	Cucumber (Chinese Long) v3	carcucB0496
Carg17964	Cla97C06G125800	Watermelon (97103) v2	carwmbB0486
Carg17964	Bhi02G000230	Wax gourd	carwgoB0562

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17964	Carg18187	Silver-seed gourd	carcarB460

The following block(s) are covering this gene:

None