CsGy1G002320 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G002320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein DCL, chloroplastic
LocationChr1 : 1465442 .. 1467863 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGAGTTAAACCAAAATATAAAGATGAATTTGAAACAAAAATCCCATATAAAACCTCGTCTTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGGTATGATATTATTAACTTATTTTAAATGTGTCATAGTTCTCTGTTTTTGTTAATTGAAAGCTCGAGAATGATATTGAGAAAATACTAATTTTGTTATAAGGGATTGTTGGAACTTGGTTGAACAGTTTTAGCAAAAGGGTTTCTATATAACTGCATGCTTATTCAAAAGGGAATCTCAAATGTCCAAGTTCTTTTTTATATTATTTGAATACAATGCTTGCTTGTTTGAATTATTTATGGTTTCCTGTTGTTGAGTATAATTTAATTGAAGACATAAAGATTGTATTGCTTCTTACTGCCAGTTAGATTAATTATTGTTGTTTGTTTAATTTGATAAAATTTGAACTCGAATGGATATTCATCTATATTGTGCTCTATTTGGTCGTGTTATGATTCGTTTAGTTGATTCTTTTAGTAAATTTTTGTTGTTATGGCTGGATGGTTTTTCCTAAACTAAGTATGATTTTTGAGTCAGTTTCCAATATTTCTTCAAATGTTTTGTTGACGGTTGGTTGGTGTCCGTTTTACTCTAAACCTACTTACTTCTTTAGATGAGACTGTTCGACTTTATTAATTATGGAAAATGGAATCTGGGTAGTACTAGAAAAATCCCAGCCTGGAGGGATAAATTTTATTTGTTTCTGTGACGGATACTCTTTTACCTTATTTGCTCATTCAAGAATTTCTTTCAGCAGTTTATTTTTCTTGTGTTATGTTGTTATTCTTCAGGATTCCCGTATTCTTGATTGATTGATGTCTGTGGAATTAATTAATGATATTGATATACTTTATCTATATACTACGGTATGGCTTATCCTGTGATGTGGAGCAAATTATTCAAACAGAAGCTATGGCTTCTAACCGTTTGTGATACAATGAGAACATTTTTATCAAATAATTCGTAATTAGAAATGCAGTCAAGTGTTTATCTTCTACTGTCTTAAAGCGTTTAGAAGTGTATTCCTTTAGGCTTTAGCTCACCTTACCATAACTTAAATGGTTAAAACATAAGCAATGCCAATTTTAGGCTTGAATTTATGTTCTATGAAGAGTGTATTTCCTTAAGGTCCCCTATATTAACTTGTAAGTCGTGCTTTTCATTTAATTAACAGCCTTTCCAACGTAAAAGATAATCCCCCGAAGTCATTGACTTGATTTGAAACATCTATAAATGATAATTTACATGATGAGAAAGCAGTGACTCTGTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAGACTCTTAAATTTTGTTGGTTTTCTTAGCAATAATTTTGTATCGTTTAATTCTTTAATTTAATGATATCTCTGTTCTTTCTGATA

mRNA sequence

GTGGAGTTAAACCAAAATATAAAGATGAATTTGAAACAAAAATCCCATATAAAACCTCGTCTTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAGACTCTTAAATTTTGTTGGTTTTCTTAGCAATAATTTTGTATCGTTTAATTCTTTAATTTAATGATATCTCTGTTCTTTCTGATA

Coding sequence (CDS)

ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA

Protein sequence

MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN
Homology
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BLAST of CsGy1G002320 vs. NCBI nr
Match: XP_011660085.1 (PREDICTED: protein DCL, chloroplastic [Cucumis sativus] >KGN63669.1 hypothetical protein Csa_1G009730 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 1.2e-114
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 

Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP
Sbjct: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF
Sbjct: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

[Close]
BLAST of CsGy1G002320 vs. NCBI nr
Match: XP_008453205.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 394.0 bits (1011), Expect = 3.4e-106
Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 0 

Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETT PK S+DASEA EAAPVINGDA SKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GV DGKKQKIEKSVEEER+EKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH+WP
Sbjct: 61  GVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHNWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           +NLNVNQYEQMVLVDLLKKGHLEPEKKIGCGI +FQIRFHP WKSKCFFLIREDESADDF
Sbjct: 121 INLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFK K DANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKAKSDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

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BLAST of CsGy1G002320 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 2.2e-81
Identity = 163/213 (76.53%), Postives = 176/213 (82.63%), Query Frame = 0 

Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKRER-EE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120
            ADD   + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
           ADDFSFRKCVDHILPLPEN K   DANRALGGG
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGG 213

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BLAST of CsGy1G002320 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia])

HSP 1 Score: 309.7 bits (792), Expect = 8.5e-81
Identity = 161/216 (74.54%), Postives = 181/216 (83.80%), Query Frame = 0 

Query: 1   MAEETIPQL---DPEVTNSGTEDMELETT----EPKASTDASEANEAAPVINGDATSKRE 60
           MAEET PQL   DPEVTNS TEDMELET+    EPK     SEANEAAP  NGDA SKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  R-EESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           R EE+AD+ + + KK K+EKSVEEER+EK+ GDGK +E+  PVSLGPKSF SSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLN+N+YEQMVL++LLKKGH+EPEKKIGCGIH+FQIR HP +KSKC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGG 209
           EDES DDFSFRKCVDHILPLPEN K K DANRALGG
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANRALGG 216

[Close]
BLAST of CsGy1G002320 vs. NCBI nr
Match: XP_023529405.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 8.5e-81
Identity = 163/213 (76.53%), Postives = 176/213 (82.63%), Query Frame = 0 

Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKRER-EE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE
Sbjct: 1   MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120
            A D V + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  GAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
           ADDFSFRKCVDHILPLPEN K   DANRALGGG
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGG 213

[Close]
BLAST of CsGy1G002320 vs. TAIR10
Match: AT5G62440.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-43
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 94  PVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIH 153
           PV LGPK F +SV +FDYF K LH WP +L+VN+YE MVL+DL+KKGH EPEKKIG GI 
Sbjct: 66  PVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIK 125

Query: 154 SFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFK 198
           +FQ+R HP WKS+CFFL+RED++ADDFSFRKCVD ILPLPEN K
Sbjct: 126 TFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

[Close]
BLAST of CsGy1G002320 vs. TAIR10
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-08
Identity = 29/94 (30.85%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 100 KSFRSSVELFDYFYKILH--HWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQI 159
           K    +V L  +   ILH   +     ++   +  ++++L   H E EKKIGCGI    +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162

Query: 160 RFHPEWK-SKCFFLIREDESADDFSFRKCVDHIL 191
             HP+++ S+C F++R+D    DFS+ KC+  ++
Sbjct: 163 GHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]
BLAST of CsGy1G002320 vs. TAIR10
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-06
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 93   VPVSLGPKSFR-SSVELFDYFYK-ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGC 152
            +P+SL    F   ++EL     K ILH + +N  +N+ ++  LV ++ + H    +KIG 
Sbjct: 1325 IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGP 1384

Query: 153  GIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCV----DHILPLPENF-KGKFDANRA 210
            G+   ++       S CF ++R D + +DFS+ KCV      I P   NF K K+  N  
Sbjct: 1385 GVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1444

[Close]
BLAST of CsGy1G002320 vs. Swiss-Prot
Match: sp|Q8L557|EM514_ARATH (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-42
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 94  PVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIH 153
           PV LGPK F +SV +FDYF K LH WP +L+VN+YE MVL+DL+KKGH EPEKKIG GI 
Sbjct: 66  PVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIK 125

Query: 154 SFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFK 198
           +FQ+R HP WKS+CFFL+RED++ADDFSFRKCVD ILPLPEN K
Sbjct: 126 TFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

[Close]
BLAST of CsGy1G002320 vs. Swiss-Prot
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 29/94 (30.85%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 100 KSFRSSVELFDYFYKILH--HWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQI 159
           K    +V L  +   ILH   +     ++   +  ++++L   H E EKKIGCGI    +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162

Query: 160 RFHPEWK-SKCFFLIREDESADDFSFRKCVDHIL 191
             HP+++ S+C F++R+D    DFS+ KC+  ++
Sbjct: 163 GHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]
BLAST of CsGy1G002320 vs. Swiss-Prot
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 32/128 (25.00%), Postives = 64/128 (50.00%), Query Frame = 0 

Query: 66  KKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH--HWPVNL 125
           + +++ K   ++ + K  GDG+       V    +    +V L  +   ILH   + +  
Sbjct: 79  ESEELVKEESDDEVGKKSGDGEGW-----VDWEDQILEDTVPLVGFVRMILHSGKYAIGD 138

Query: 126 NVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWK-SKCFFLIREDESADDFSF 185
            ++   Q  ++  L   H E +KKIG G+    + +HP+++ S+C F++R+D    DFS+
Sbjct: 139 RLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSY 198

Query: 186 RKCVDHIL 191
            KC+  ++
Sbjct: 199 WKCIKGLI 201

[Close]
BLAST of CsGy1G002320 vs. Swiss-Prot
Match: sp|Q9LQ02|NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.0e-05
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 93   VPVSLGPKSFR-SSVELFDYFYK-ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGC 152
            +P+SL    F   ++EL     K ILH + +N  +N+ ++  LV ++ + H    +KIG 
Sbjct: 1325 IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGP 1384

Query: 153  GIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCV----DHILPLPENF-KGKFDANRA 210
            G+   ++       S CF ++R D + +DFS+ KCV      I P   NF K K+  N  
Sbjct: 1385 GVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1444

[Close]
BLAST of CsGy1G002320 vs. TrEMBL
Match: tr|A0A0A0LRN9|A0A0A0LRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.7e-115
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 

Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP
Sbjct: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF
Sbjct: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

[Close]
BLAST of CsGy1G002320 vs. TrEMBL
Match: tr|A0A1S3BWT9|A0A1S3BWT9_CUCME (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.3e-106
Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 0 

Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETT PK S+DASEA EAAPVINGDA SKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GV DGKKQKIEKSVEEER+EKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH+WP
Sbjct: 61  GVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHNWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           +NLNVNQYEQMVLVDLLKKGHLEPEKKIGCGI +FQIRFHP WKSKCFFLIREDESADDF
Sbjct: 121 INLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFK K DANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKAKSDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

[Close]
BLAST of CsGy1G002320 vs. TrEMBL
Match: tr|A0A2P5C8I2|A0A2P5C8I2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 127/217 (58.53%), Postives = 152/217 (70.05%), Query Frame = 0 

Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60
           MAE++  +L   +PE  NS   +M+LE          SE N           SKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMDLEA--------GSEPN-----------SKRAREEG 60

Query: 61  ADDGVAD---GKKQKI--EKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           AD G  +    KKQK+  EKSVEEERL+K  G+G  +EE  PV LGPK+F SSVE+FDY 
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLDKKLGEG--DEESGPVKLGPKTFGSSVEMFDYL 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLNVN+YE MVL+DLLKKGH EP+KKIG GI +FQ+R+HP WKS+CFFLIR
Sbjct: 121 YKFLHYWPTNLNVNKYEHMVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
            DES+DDFSFRKCVD ILPLPE+ K K +AN+ LGGG
Sbjct: 181 NDESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

[Close]
BLAST of CsGy1G002320 vs. TrEMBL
Match: tr|A0A2P5F752|A0A2P5F752_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.0e-55
Identity = 127/217 (58.53%), Postives = 152/217 (70.05%), Query Frame = 0 

Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60
           MAE++  +L   +PE  NS   +M+LE          SE N           SKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMDLEA--------GSEPN-----------SKRAREEG 60

Query: 61  ADDGVAD---GKKQKI--EKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           AD G  +    KKQK+  EKSVEEERLEK  G+G  +EE  PV LGPK+F SSVE+FDY 
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLEKKLGEG--DEESGPVKLGPKTFGSSVEMFDYL 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLNVN+YE +VL+DLLKKGH EP+KKIG GI +FQ+R+HP WKS+CFFLIR
Sbjct: 121 YKFLHYWPTNLNVNKYEHVVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
            DES+DDFSFRKCVD ILPLPE+ K K +AN+ LGGG
Sbjct: 181 NDESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

[Close]
BLAST of CsGy1G002320 vs. TrEMBL
Match: tr|M5WNA6|M5WNA6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 126/213 (59.15%), Postives = 154/213 (72.30%), Query Frame = 0 

Query: 1   MAEETIPQLDPEVTNSGT----EDMELETTEPKASTDASEANEAAPVINGDATSKREREE 60
           MAE+T+ +L    TNS T    EDMELE +EP  +    E          +A +KR R+E
Sbjct: 1   MAEKTVSEL--AETNSETAAAAEDMELEASEPAPAEKPDEGTNG----EAEANAKRLRDE 60

Query: 61  SADDG-VADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKI 120
              +G  A  KK K+EKS EEERLEKL G+GK   E   VSLGPKSF SSVE+FDYFY++
Sbjct: 61  EGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYFYRL 120

Query: 121 LHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDE 180
           LH+WP +L+VN+YE +VL+DLLKKGH EP+KKIG G+ +FQ+R HP +KS+CFFLIREDE
Sbjct: 121 LHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIREDE 180

Query: 181 SADDFSFRKCVDHILPLPENFKGKFDANRALGG 209
           + DDFSFRKCVD ILPLPEN K   DAN+ALGG
Sbjct: 181 TVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

The following BLAST results are available for this feature:
BLAST of CsGy1G002320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660085.11.2e-114100.00PREDICTED: protein DCL, chloroplastic [Cucumis sativus] >KGN63669.1 hypothetical... [more]
XP_008453205.13.4e-10693.97PREDICTED: protein DCL, chloroplastic [Cucumis melo][more]
XP_022933555.12.2e-8176.53protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata][more]
XP_022135230.18.5e-8174.54protein EMBRYO DEFECTIVE 514 [Momordica charantia][more]
XP_023529405.18.5e-8176.53protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy1G002320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62440.15.0e-4372.12Protein of unknown function (DUF3223)[more]
AT1G45230.11.8e-0830.85Protein of unknown function (DUF3223)[more]
AT1G63020.12.2e-0631.45nuclear RNA polymerase D1A[more]
BLAST of CsGy1G002320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8L557|EM514_ARATH9.0e-4272.12Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1[more]
sp|Q9C642|DCL_ARATH3.2e-0730.85Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S... [more]
sp|Q42463|DCL_SOLLC1.0e-0525.00Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1[more]
sp|Q9LQ02|NRPD1_ARATH4.0e-0531.45DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD... [more]
BLAST of CsGy1G002320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRN9|A0A0A0LRN9_CUCSA7.7e-115100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1[more]
tr|A0A1S3BWT9|A0A1S3BWT9_CUCME2.3e-10693.97protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1[more]
tr|A0A2P5C8I2|A0A2P5C8I2_PARAD6.9e-5558.53Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE... [more]
tr|A0A2P5F752|A0A2P5F752_9ROSA9.0e-5558.53Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 S... [more]
tr|M5WNA6|M5WNA6_PRUPE1.2e-5459.15Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G002320.1CsGy1G002320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.40coord: 91..190
e-value: 1.1E-28
score: 101.5
NoneNo IPR availablePFAMPF11523DUF3223coord: 114..186
e-value: 1.1E-24
score: 86.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..232
NoneNo IPR availablePANTHERPTHR33415FAMILY NOT NAMEDcoord: 1..232
NoneNo IPR availablePANTHERPTHR33415:SF3EMB514coord: 1..232

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G002320Cla019113Watermelon (97103) v1cgybwmB094
CsGy1G002320Csa1G009730Cucumber (Chinese Long) v2cgybcuB001
CsGy1G002320MELO3C017173Melon (DHL92) v3.5.1cgybmeB048
CsGy1G002320ClCG06G016210Watermelon (Charleston Gray)cgybwcgB078
CsGy1G002320CSPI01G02270Wild cucumber (PI 183967)cgybcpiB001
CsGy1G002320CmaCh10G001900Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G002320CmaCh11G001440Cucurbita maxima (Rimu)cgybcmaB040
CsGy1G002320CmoCh10G002070Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G002320CmoCh11G001640Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G002320Lsi06G014650Bottle gourd (USVL1VR-Ls)cgyblsiB067
CsGy1G002320Cp4.1LG04g14960Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G002320Cp4.1LG18g07910Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G002320MELO3C017173.2Melon (DHL92) v3.6.1cgybmedB043
CsGy1G002320CsaV3_1G002330Cucumber (Chinese Long) v3cgybcucB002
CsGy1G002320Cla97C06G125800Watermelon (97103) v2cgybwmbB076
CsGy1G002320Bhi02G000230Wax gourdcgybwgoB092
CsGy1G002320Carg10411Silver-seed gourdcarcgybB0371
CsGy1G002320Carg17964Silver-seed gourdcarcgybB0470
CsGy1G002320Carg18187Silver-seed gourdcarcgybB0611
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G002320Cucumber (Gy14) v2cgybcgybB002
CsGy1G002320Cucumber (Gy14) v2cgybcgybB029
CsGy1G002320Cucurbita maxima (Rimu)cgybcmaB103
CsGy1G002320Cucurbita maxima (Rimu)cgybcmaB106
CsGy1G002320Cucurbita maxima (Rimu)cgybcmaB130
CsGy1G002320Cucurbita moschata (Rifu)cgybcmoB100
CsGy1G002320Cucurbita moschata (Rifu)cgybcmoB119
CsGy1G002320Cucurbita pepo (Zucchini)cgybcpeB014
CsGy1G002320Cucurbita pepo (Zucchini)cgybcpeB061
CsGy1G002320Cucurbita pepo (Zucchini)cgybcpeB101
CsGy1G002320Cucurbita pepo (Zucchini)cgybcpeB108
CsGy1G002320Cucumber (Chinese Long) v2cgybcuB004
CsGy1G002320Bottle gourd (USVL1VR-Ls)cgyblsiB021
CsGy1G002320Bottle gourd (USVL1VR-Ls)cgyblsiB040
CsGy1G002320Melon (DHL92) v3.5.1cgybmeB007
CsGy1G002320Melon (DHL92) v3.5.1cgybmeB024
CsGy1G002320Melon (DHL92) v3.6.1cgybmedB005
CsGy1G002320Melon (DHL92) v3.6.1cgybmedB024
CsGy1G002320Watermelon (Charleston Gray)cgybwcgB003
CsGy1G002320Watermelon (Charleston Gray)cgybwcgB054
CsGy1G002320Watermelon (Charleston Gray)cgybwcgB060
CsGy1G002320Watermelon (97103) v1cgybwmB004
CsGy1G002320Watermelon (97103) v1cgybwmB065
CsGy1G002320Wild cucumber (PI 183967)cgybcpiB003
CsGy1G002320Wild cucumber (PI 183967)cgybcpiB031
CsGy1G002320Silver-seed gourdcarcgybB0053
CsGy1G002320Cucumber (Chinese Long) v3cgybcucB004
CsGy1G002320Cucumber (Chinese Long) v3cgybcucB039
CsGy1G002320Watermelon (97103) v2cgybwmbB054
CsGy1G002320Watermelon (97103) v2cgybwmbB058
CsGy1G002320Watermelon (97103) v2cgybwmbB088
CsGy1G002320Wax gourdcgybwgoB009
CsGy1G002320Wax gourdcgybwgoB050
CsGy1G002320Wax gourdcgybwgoB067