CsGy1G002320.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G002320.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein DCL, chloroplastic
Location	Chr1 : 1465442 .. 1467863 (+)
Sequence length	1182

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAGTTAAACCAAAATATAAAGATGAATTTGAAACAAAAATCCCATATAAAACCTCGTCTTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGGTATGATATTATTAACTTATTTTAAATGTGTCATAGTTCTCTGTTTTTGTTAATTGAAAGCTCGAGAATGATATTGAGAAAATACTAATTTTGTTATAAGGGATTGTTGGAACTTGGTTGAACAGTTTTAGCAAAAGGGTTTCTATATAACTGCATGCTTATTCAAAAGGGAATCTCAAATGTCCAAGTTCTTTTTTATATTATTTGAATACAATGCTTGCTTGTTTGAATTATTTATGGTTTCCTGTTGTTGAGTATAATTTAATTGAAGACATAAAGATTGTATTGCTTCTTACTGCCAGTTAGATTAATTATTGTTGTTTGTTTAATTTGATAAAATTTGAACTCGAATGGATATTCATCTATATTGTGCTCTATTTGGTCGTGTTATGATTCGTTTAGTTGATTCTTTTAGTAAATTTTTGTTGTTATGGCTGGATGGTTTTTCCTAAACTAAGTATGATTTTTGAGTCAGTTTCCAATATTTCTTCAAATGTTTTGTTGACGGTTGGTTGGTGTCCGTTTTACTCTAAACCTACTTACTTCTTTAGATGAGACTGTTCGACTTTATTAATTATGGAAAATGGAATCTGGGTAGTACTAGAAAAATCCCAGCCTGGAGGGATAAATTTTATTTGTTTCTGTGACGGATACTCTTTTACCTTATTTGCTCATTCAAGAATTTCTTTCAGCAGTTTATTTTTCTTGTGTTATGTTGTTATTCTTCAGGATTCCCGTATTCTTGATTGATTGATGTCTGTGGAATTAATTAATGATATTGATATACTTTATCTATATACTACGGTATGGCTTATCCTGTGATGTGGAGCAAATTATTCAAACAGAAGCTATGGCTTCTAACCGTTTGTGATACAATGAGAACATTTTTATCAAATAATTCGTAATTAGAAATGCAGTCAAGTGTTTATCTTCTACTGTCTTAAAGCGTTTAGAAGTGTATTCCTTTAGGCTTTAGCTCACCTTACCATAACTTAAATGGTTAAAACATAAGCAATGCCAATTTTAGGCTTGAATTTATGTTCTATGAAGAGTGTATTTCCTTAAGGTCCCCTATATTAACTTGTAAGTCGTGCTTTTCATTTAATTAACAGCCTTTCCAACGTAAAAGATAATCCCCCGAAGTCATTGACTTGATTTGAAACATCTATAAATGATAATTTACATGATGAGAAAGCAGTGACTCTGTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAGACTCTTAAATTTTGTTGGTTTTCTTAGCAATAATTTTGTATCGTTTAATTCTTTAATTTAATGATATCTCTGTTCTTTCTGATA

mRNA sequence

GTGGAGTTAAACCAAAATATAAAGATGAATTTGAAACAAAAATCCCATATAAAACCTCGTCTTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAGACTCTTAAATTTTGTTGGTTTTCTTAGCAATAATTTTGTATCGTTTAATTCTTTAATTTAATGATATCTCTGTTCTTTCTGATA

Coding sequence (CDS)

ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA

Protein sequence

MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN

Homology

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BLAST of CsGy1G002320.1 vs. NCBI nr
Match: XP_011660085.1 (PREDICTED: protein DCL, chloroplastic [Cucumis sativus] >KGN63669.1 hypothetical protein Csa_1G009730 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 1.2e-114
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP
Sbjct: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF
Sbjct: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

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BLAST of CsGy1G002320.1 vs. NCBI nr
Match: XP_008453205.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 394.0 bits (1011), Expect = 3.4e-106
Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETT PK S+DASEA EAAPVINGDA SKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GV DGKKQKIEKSVEEER+EKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH+WP
Sbjct: 61  GVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHNWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           +NLNVNQYEQMVLVDLLKKGHLEPEKKIGCGI +FQIRFHP WKSKCFFLIREDESADDF
Sbjct: 121 INLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFK K DANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKAKSDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

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BLAST of CsGy1G002320.1 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 2.2e-81
Identity = 163/213 (76.53%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKRER-EE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120
            ADD   + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
           ADDFSFRKCVDHILPLPEN K   DANRALGGG
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGG 213

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BLAST of CsGy1G002320.1 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia])

HSP 1 Score: 309.7 bits (792), Expect = 8.5e-81
Identity = 161/216 (74.54%), Postives = 181/216 (83.80%), Query Frame = 0


Query: 1   MAEETIPQL---DPEVTNSGTEDMELETT----EPKASTDASEANEAAPVINGDATSKRE 60
           MAEET PQL   DPEVTNS TEDMELET+    EPK     SEANEAAP  NGDA SKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  R-EESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           R EE+AD+ + + KK K+EKSVEEER+EK+ GDGK +E+  PVSLGPKSF SSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLN+N+YEQMVL++LLKKGH+EPEKKIGCGIH+FQIR HP +KSKC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGG 209
           EDES DDFSFRKCVDHILPLPEN K K DANRALGG
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANRALGG 216

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BLAST of CsGy1G002320.1 vs. NCBI nr
Match: XP_023529405.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 8.5e-81
Identity = 163/213 (76.53%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKRER-EE 60
           MAEETIPQL    PEVTNS  EDMELE+TEPK S   S+ANEAAPV NGDA SKRER EE
Sbjct: 1   MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120
            A D V + KK K+EKSVEEERLEK+  DGK EEE  PVSLGPKSF SSVELFDYFY  L
Sbjct: 61  GAGDCVGEAKKLKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180
           H+WP NLNVNQYE MVL+DL+KKGH+EP+KKIGCG+ + QIR+HP WKSKCFFLIRED S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
           ADDFSFRKCVDHILPLPEN K   DANRALGGG
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGG 213

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BLAST of CsGy1G002320.1 vs. TAIR10
Match: AT5G62440.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-43
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 94  PVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIH 153
           PV LGPK F +SV +FDYF K LH WP +L+VN+YE MVL+DL+KKGH EPEKKIG GI 
Sbjct: 66  PVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIK 125

Query: 154 SFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFK 198
           +FQ+R HP WKS+CFFL+RED++ADDFSFRKCVD ILPLPEN K
Sbjct: 126 TFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

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BLAST of CsGy1G002320.1 vs. TAIR10
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-08
Identity = 29/94 (30.85%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 100 KSFRSSVELFDYFYKILH--HWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQI 159
           K    +V L  +   ILH   +     ++   +  ++++L   H E EKKIGCGI    +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162

Query: 160 RFHPEWK-SKCFFLIREDESADDFSFRKCVDHIL 191
             HP+++ S+C F++R+D    DFS+ KC+  ++
Sbjct: 163 GHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

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BLAST of CsGy1G002320.1 vs. TAIR10
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-06
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 93   VPVSLGPKSFR-SSVELFDYFYK-ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGC 152
            +P+SL    F   ++EL     K ILH + +N  +N+ ++  LV ++ + H    +KIG 
Sbjct: 1325 IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGP 1384

Query: 153  GIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCV----DHILPLPENF-KGKFDANRA 210
            G+   ++       S CF ++R D + +DFS+ KCV      I P   NF K K+  N  
Sbjct: 1385 GVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1444

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BLAST of CsGy1G002320.1 vs. Swiss-Prot
Match: sp|Q8L557|EM514_ARATH (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-42
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 94  PVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIH 153
           PV LGPK F +SV +FDYF K LH WP +L+VN+YE MVL+DL+KKGH EPEKKIG GI 
Sbjct: 66  PVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIK 125

Query: 154 SFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFK 198
           +FQ+R HP WKS+CFFL+RED++ADDFSFRKCVD ILPLPEN K
Sbjct: 126 TFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169

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BLAST of CsGy1G002320.1 vs. Swiss-Prot
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 29/94 (30.85%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 100 KSFRSSVELFDYFYKILH--HWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQI 159
           K    +V L  +   ILH   +     ++   +  ++++L   H E EKKIGCGI    +
Sbjct: 103 KILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMV 162

Query: 160 RFHPEWK-SKCFFLIREDESADDFSFRKCVDHIL 191
             HP+++ S+C F++R+D    DFS+ KC+  ++
Sbjct: 163 GHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

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BLAST of CsGy1G002320.1 vs. Swiss-Prot
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 32/128 (25.00%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 66  KKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH--HWPVNL 125
           + +++ K   ++ + K  GDG+       V    +    +V L  +   ILH   + +  
Sbjct: 79  ESEELVKEESDDEVGKKSGDGEGW-----VDWEDQILEDTVPLVGFVRMILHSGKYAIGD 138

Query: 126 NVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWK-SKCFFLIREDESADDFSF 185
            ++   Q  ++  L   H E +KKIG G+    + +HP+++ S+C F++R+D    DFS+
Sbjct: 139 RLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSY 198

Query: 186 RKCVDHIL 191
            KC+  ++
Sbjct: 199 WKCIKGLI 201

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BLAST of CsGy1G002320.1 vs. Swiss-Prot
Match: sp|Q9LQ02|NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.0e-05
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 93   VPVSLGPKSFR-SSVELFDYFYK-ILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGC 152
            +P+SL    F   ++EL     K ILH + +N  +N+ ++  LV ++ + H    +KIG 
Sbjct: 1325 IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGP 1384

Query: 153  GIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCV----DHILPLPENF-KGKFDANRA 210
            G+   ++       S CF ++R D + +DFS+ KCV      I P   NF K K+  N  
Sbjct: 1385 GVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1444

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BLAST of CsGy1G002320.1 vs. TrEMBL
Match: tr|A0A0A0LRN9|A0A0A0LRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.7e-115
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP
Sbjct: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF
Sbjct: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

[Close]

BLAST of CsGy1G002320.1 vs. TrEMBL
Match: tr|A0A1S3BWT9|A0A1S3BWT9_CUCME (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.3e-106
Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADD 60
           MAEETIPQLDPEVTNSGTEDMELETT PK S+DASEA EAAPVINGDA SKREREESADD
Sbjct: 1   MAEETIPQLDPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREESADD 60

Query: 61  GVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWP 120
           GV DGKKQKIEKSVEEER+EKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILH+WP
Sbjct: 61  GVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHNWP 120

Query: 121 VNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDF 180
           +NLNVNQYEQMVLVDLLKKGHLEPEKKIGCGI +FQIRFHP WKSKCFFLIREDESADDF
Sbjct: 121 INLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDESADDF 180

Query: 181 SFRKCVDHILPLPENFKGKFDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 233
           SFRKCVDHILPLPENFK K DANRALGGGXXXXXXXXXXXXXXXXXXXRWRN
Sbjct: 181 SFRKCVDHILPLPENFKAKSDANRALGGGXXXXXXXXXXXXXXXXXXXRWRN 232

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BLAST of CsGy1G002320.1 vs. TrEMBL
Match: tr|A0A2P5C8I2|A0A2P5C8I2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 127/217 (58.53%), Postives = 152/217 (70.05%), Query Frame = 0


Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60
           MAE++  +L   +PE  NS   +M+LE          SE N           SKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMDLEA--------GSEPN-----------SKRAREEG 60

Query: 61  ADDGVAD---GKKQKI--EKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           AD G  +    KKQK+  EKSVEEERL+K  G+G  +EE  PV LGPK+F SSVE+FDY 
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLDKKLGEG--DEESGPVKLGPKTFGSSVEMFDYL 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLNVN+YE MVL+DLLKKGH EP+KKIG GI +FQ+R+HP WKS+CFFLIR
Sbjct: 121 YKFLHYWPTNLNVNKYEHMVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
            DES+DDFSFRKCVD ILPLPE+ K K +AN+ LGGG
Sbjct: 181 NDESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

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BLAST of CsGy1G002320.1 vs. TrEMBL
Match: tr|A0A2P5F752|A0A2P5F752_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.0e-55
Identity = 127/217 (58.53%), Postives = 152/217 (70.05%), Query Frame = 0


Query: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREES 60
           MAE++  +L   +PE  NS   +M+LE          SE N           SKR REE 
Sbjct: 1   MAEQSAQELAETNPEQPNSTVAEMDLEA--------GSEPN-----------SKRAREEG 60

Query: 61  ADDGVAD---GKKQKI--EKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYF 120
           AD G  +    KKQK+  EKSVEEERLEK  G+G  +EE  PV LGPK+F SSVE+FDY 
Sbjct: 61  ADSGEENDGVSKKQKVGGEKSVEEERLEKKLGEG--DEESGPVKLGPKTFGSSVEMFDYL 120

Query: 121 YKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIR 180
           YK LH+WP NLNVN+YE +VL+DLLKKGH EP+KKIG GI +FQ+R+HP WKS+CFFLIR
Sbjct: 121 YKFLHYWPTNLNVNKYEHVVLLDLLKKGHPEPDKKIGEGISAFQVRYHPMWKSRCFFLIR 180

Query: 181 EDESADDFSFRKCVDHILPLPENFKGKFDANRALGGG 210
            DES+DDFSFRKCVD ILPLPE+ K K +AN+ LGGG
Sbjct: 181 NDESSDDFSFRKCVDRILPLPEDMKTKSNANKPLGGG 196

[Close]

BLAST of CsGy1G002320.1 vs. TrEMBL
Match: tr|M5WNA6|M5WNA6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 126/213 (59.15%), Postives = 154/213 (72.30%), Query Frame = 0


Query: 1   MAEETIPQLDPEVTNSGT----EDMELETTEPKASTDASEANEAAPVINGDATSKREREE 60
           MAE+T+ +L    TNS T    EDMELE +EP  +    E          +A +KR R+E
Sbjct: 1   MAEKTVSEL--AETNSETAAAAEDMELEASEPAPAEKPDEGTNG----EAEANAKRLRDE 60

Query: 61  SADDG-VADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKI 120
              +G  A  KK K+EKS EEERLEKL G+GK   E   VSLGPKSF SSVE+FDYFY++
Sbjct: 61  EGSEGNDAVAKKTKVEKSPEEERLEKL-GEGK---ESGRVSLGPKSFGSSVEMFDYFYRL 120

Query: 121 LHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDE 180
           LH+WP +L+VN+YE +VL+DLLKKGH EP+KKIG G+ +FQ+R HP +KS+CFFLIREDE
Sbjct: 121 LHYWPTDLSVNKYEHLVLLDLLKKGHAEPDKKIGGGVQAFQVRTHPLYKSRCFFLIREDE 180

Query: 181 SADDFSFRKCVDHILPLPENFKGKFDANRALGG 209
           + DDFSFRKCVD ILPLPEN K   DAN+ALGG
Sbjct: 181 TVDDFSFRKCVDQILPLPENMKAHSDANKALGG 203

The following BLAST results are available for this feature:

BLAST of CsGy1G002320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660085.1	1.2e-114	100.00	PREDICTED: protein DCL, chloroplastic [Cucumis sativus] >KGN63669.1 hypothetical...	[more]
XP_008453205.1	3.4e-106	93.97	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]
XP_022933555.1	2.2e-81	76.53	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]
XP_022135230.1	8.5e-81	74.54	protein EMBRYO DEFECTIVE 514 [Momordica charantia]	[more]
XP_023529405.1	8.5e-81	76.53	protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G002320.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62440.1	5.0e-43	72.12	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	1.8e-08	30.85	Protein of unknown function (DUF3223)	[more]
AT1G63020.1	2.2e-06	31.45	nuclear RNA polymerase D1A	[more]

BLAST of CsGy1G002320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L557\|EM514_ARATH	9.0e-42	72.12	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
sp\|Q9C642\|DCL_ARATH	3.2e-07	30.85	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
sp\|Q42463\|DCL_SOLLC	1.0e-05	25.00	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
sp\|Q9LQ02\|NRPD1_ARATH	4.0e-05	31.45	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]

BLAST of CsGy1G002320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRN9\|A0A0A0LRN9_CUCSA	7.7e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1	[more]
tr\|A0A1S3BWT9\|A0A1S3BWT9_CUCME	2.3e-106	93.97	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1	[more]
tr\|A0A2P5C8I2\|A0A2P5C8I2_PARAD	6.9e-55	58.53	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_175030 PE...	[more]
tr\|A0A2P5F752\|A0A2P5F752_9ROSA	9.0e-55	58.53	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105700 PE=4 S...	[more]
tr\|M5WNA6\|M5WNA6_PRUPE	1.2e-54	59.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G002320	CsGy1G002320	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G002320.1	CsGy1G002320.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002320.1.five_prime_UTR.1	CsGy1G002320.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002320.1.exon.1	CsGy1G002320.1.exon.1	exon
CsGy1G002320.1.exon.2	CsGy1G002320.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002320.1.CDS.1	CsGy1G002320.1.CDS.1	CDS
CsGy1G002320.1.CDS.2	CsGy1G002320.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G002320.1.three_prime_UTR.1	CsGy1G002320.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.40		coord: 91..190 e-value: 1.1E-28 score: 101.5
None	No IPR available	PFAM	PF11523	DUF3223	coord: 114..186 e-value: 1.1E-24 score: 86.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..232
None	No IPR available	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..232
None	No IPR available	PANTHER	PTHR33415:SF3	EMB514	coord: 1..232