Csa1G009730.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTATACTGTACTTTGCTAGGGTTTTAGTTTGAAGCTTGATTGTTCCAACTTGAATTCACAAATTACAATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGGTATGATATTATTAACTTATTTTAAATGTGTCATAGTTCTCTGTTTTTGTTAATTGAAAGCTCGAGAATGATATTGAGAAAATACTAATTTTGTTATAAGGGATTGTTGGAACTTGGTTGAACAGTTTTAGCAAAAGGGTTTCTATATAACTGCATGCTTATTCAAAAGGGAATCTCAAATGTCCAAGTTCTTTTTTATATTATTTGAATACAATGCTTGCTTGTTTGAATTATTTATGGTTTCCTGTTGTTGAGTATAATTTAATTGAAGACATAAAGATTGTATTGCTTCTTACTGCCAGTTAGATTAATTATTGTTGTTTGTTTAATTTGATAAAATTTGAACTCGAATGGATATTCATCTATATTGTGCTCTATTTGGTCGTGTTATGATTCGTTTAGTTGATTCTTTTAGTAAATTTTTGTTGTTATGGCTGGATGGTTTTTCCTAAACTAAGTATGATTTTTGAGTCAGTTTCCAATATTTCTTCAAATGTTTTGTTGACGGTTGGTTGGTGTCCGTTTTACTCTAAACCTACTTACTTCTTTAGATGAGACTGTTCGACTTTATTAATTATGGAAAATGGAATCTGGGTAGTACTAGAAAAATCCCAGCCTGGAGGGATAAATTTTATTTGTTTCTGTGACGGATACTCTTTTACCTTATTTGCTCATTCAAGAATTTCTTTCAGCAGTTTATTTTTCTTGTGTTATGTTGTTATTCTTCAGGATTCCCGTATTCTTGATTGATTGATGTCTGTGGAATTAATTAATGATATTGATATACTTTATCTATATACTACGGTATGGCTTATCCTGTGATGTGGAGCAAATTATTCAAACAGAAGCTATGGCTTCTAACCGTTTGTGATACAATGAGAACATTTTTATCAAATAATTCGTAATTAGAAATGCAGTCAAGTGTTTATCTTCTACTGTCTTAAAGCGTTTAGAAGTGTATTCCTTTAGGCTTTAGCTCACCTTACCATAACTTAAATGGTTAAAACATAAGCAATGCCAATTTTAGGCTTGAATTTATGTTCTATGAAGAGTGTATTTCCTTAAGGTCCCCTATATTAACTTGTAAGTCGTGCTTTTCATTTAATTAACAGCCTTTCCAACGTAAAAGATAATCCCCCGAAGTCATTGACTTGATTTGAAACATCTATAAATGATAATTTACATGATGAGAAAGCAGTGACTCTGTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGATGTTTTTCCCAACACTTTTCAGTCTCACCACTTTGGACTCAATTTTCCTGCGAAGAATTTACCACAAAATCCCCACCAATTCAAGCTTCTTGGCCATGAGTTCAATGAAAAAAGTAGAGGAATAATTTTTTTATGCCCATAATTTATGCTTTTCTTAGCGTGCTTGATGTATGAACTCAAAATTATGATACAATTTTCTGACGATAATTGTTAAAGGATGAGTTTTTATGTTAATTTTAGAGAGAATTAATGTCCGAATATTATCCAAG ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA ATGGCGGAAGAGACAATCCCTCAACTCGATCCGGAGGTAACCAACTCAGGCACTGAAGATATGGAATTGGAAACTACGGAACCGAAAGCTTCAACTGATGCTTCTGAAGCAAATGAGGCCGCTCCAGTAATTAATGGCGATGCTACTTCGAAGCGAGAGAGGGAGGAAAGCGCCGATGATGGCGTCGCCGATGGGAAGAAGCAGAAGATAGAGAAATCTGTTGAGGAGGAAAGGCTTGAGAAGTTGGGTGGAGACGGTAAGTGTGAGGAGGAACCTGTTCCTGTGAGCTTAGGCCCCAAGAGCTTTCGATCATCGGTGGAATTGTTTGATTACTTCTATAAGATCCTTCACCACTGGCCTGTCAACTTGAACGTGAACCAGTACGAGCAAATGGTGCTGGTAGATTTACTTAAGAAGGGACATCTAGAACCAGAGAAAAAGATTGGCTGTGGTATTCACTCTTTTCAAATTCGTTTCCATCCTGAGTGGAAAAGCAAGTGCTTCTTCCTCATCCGGGAGGATGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTTGATCATATCCTTCCTCTGCCTGAAAACTTCAAAGGAAAATTTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGTGGGGGTGGTGGACGTGGAAGAGGAGGAGGGGGTCGGTGGAGAAACTGA MAEETIPQLDPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREESADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKILHHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDESADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN*
BLAST of Csa1G009730.1 vs. TAIR10
Match: AT5G62440.1 (AT5G62440.1 Protein of unknown function (DUF3223)) HSP 1 Score: 216.5 bits (550), Expect = 1.8e-56 Identity = 117/229 (51.09%), Postives = 139/229 (60.70%), Query Frame = 1
BLAST of Csa1G009730.1 vs. NCBI nr
Match: gi|778655953|ref|XP_011660085.1| (PREDICTED: protein DCL, chloroplastic [Cucumis sativus]) HSP 1 Score: 484.2 bits (1245), Expect = 1.3e-133 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Csa1G009730.1 vs. NCBI nr
Match: gi|659105915|ref|XP_008453205.1| (PREDICTED: protein DCL, chloroplastic [Cucumis melo]) HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125 Identity = 218/232 (93.97%), Postives = 223/232 (96.12%), Query Frame = 1
BLAST of Csa1G009730.1 vs. NCBI nr
Match: gi|1009132640|ref|XP_015883480.1| (PREDICTED: protein DCL, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 266.5 bits (680), Expect = 4.2e-68 Identity = 146/252 (57.94%), Postives = 174/252 (69.05%), Query Frame = 1
BLAST of Csa1G009730.1 vs. NCBI nr
Match: gi|225457413|ref|XP_002284935.1| (PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera]) HSP 1 Score: 263.8 bits (673), Expect = 2.8e-67 Identity = 139/241 (57.68%), Postives = 173/241 (71.78%), Query Frame = 1
BLAST of Csa1G009730.1 vs. NCBI nr
Match: gi|645269311|ref|XP_008239940.1| (PREDICTED: protein DCL, chloroplastic [Prunus mume]) HSP 1 Score: 258.5 bits (659), Expect = 1.2e-65 Identity = 140/232 (60.34%), Postives = 167/232 (71.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
|