Csa1G001280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G001280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMitochondrial import inner membrane translocase subunit Tim8; contains IPR004217 (Tim10/DDP family zinc finger)
LocationChr1 : 155232 .. 156471 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGTGAGTTCATTTTCGTGGTTTTTAATTGTCACTTCTTGGCTATGATTCATTCTGGATCGAGTATGAAAAATGAAATGACGGTAATCATTTGTGGTATTTGAAATAGGAAAAAAGACAAGATCTTTAATTTCCTCTCCCATGAATATGCTATTGGGTTGCTTTTTATCGCCTTTATGCATTACCTATTTAGTTCGTAGAATATCCGAGAATGGTAAAATTGATATCAGTCATGATTATTTCTTGTCAACTCTGCTACTTAGTGTCTAATAGGACATAATGTGTTTGCAAGAAACTATTTTTTAGAAGCAATGACAGAGCCCTTGAGACTGAGACCTACACTGACCCTGTCTAAAGATAAGTCTTAAGAAATGCTTTGTTGTCATCAGAACTCCTTACTCACCAGATAGTACGCTCTTGAAATTAGAATATTATGTCTACAGCAGATTTGAGTTTGTCTCTAAATCGGAAATGAATTATATTTTTATCACAGTTTGACTTTGGTCCGAAAACTTCAGAGACGTCACTTGATGATTGTACTGCTATGTGGAATATCAATGAATACAAATCTGGAAACAATACATGCTCTGACTTCTTTTTGTTTCTTTTTCTTGAAAACAGAAACAAACATTTTTTTCCGATAAGCGTATTCAATGAGTTTATCAGCCATGCAAGTAATTATAGGCTATGGAATTCCATGGGTTCATATCACTTAAAAAGATCAGAGTTTGTCTGAACTTGGGGGTTACAGTTATATGTCTTTAAGTATGATTTTGTTTATGTAAGATGTTCAATTTTATTTGCCAACAAACCATAGGTGGCAATCAGTTGACTACTCATTGTGTGTTGTCTACTCTTCACCACGCACCCTCCATCGTTTTTCATTTCTGGATTTCAACCTTCCTCCCTGTTCAGTTTAGACAGAAGATGCTTTGTTTTGTGACTTCTATTTGTTGCAGTGACAAAATTTAAATGCTATTGGTCAATTATTTGATCATTTGTTAAACAGGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAA

mRNA sequence

ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAA

Coding sequence (CDS)

ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAA

Protein sequence

MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQNS*
Homology
[Close]
BLAST of Csa1G001280 vs. Swiss-Prot
Match: TIM8_ARATH (Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CA
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRF +
Sbjct: 61 QRYMDMSMIIMKRFNS 76

[Close]
BLAST of Csa1G001280 vs. Swiss-Prot
Match: TIM8_CRYNJ (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIM8 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-11
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 10 ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSII 69
          EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ 
Sbjct: 17 ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 70 IMKRFQ 76
          I+++ +
Sbjct: 77 IVRQIE 82

[Close]
BLAST of Csa1G001280 vs. Swiss-Prot
Match: TIM8_CRYNB (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIM8 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-11
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 10 ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSII 69
          EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ 
Sbjct: 17 ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 70 IMKRFQ 76
          I+++ +
Sbjct: 77 IVRQIE 82

[Close]
BLAST of Csa1G001280 vs. Swiss-Prot
Match: TIM8_DROME (Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-10
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 1 

Query: 2  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 61
          ++ S N  EL  F+  EKQ+A V   + +   +CW+KCI G P +K   +   CLSNC  
Sbjct: 5  ENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVD 64

Query: 62 RYMDMSIIIMKRF 75
          R++D S++I +RF
Sbjct: 65 RFIDTSLLITQRF 76

[Close]
BLAST of Csa1G001280 vs. Swiss-Prot
Match: TIM8_SCHPO (Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim8 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-10
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 

Query: 2  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 61
          D S     EL  FI  E+Q+  + + + + TS CW KCI G  G+K   SE  CL NC +
Sbjct: 11 DLSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCI-GNIGNKLDKSEEQCLQNCVE 70

Query: 62 RYMDMSIIIMKRF 75
          R++D +  I+KR+
Sbjct: 71 RFLDCNFHIIKRY 82

[Close]
BLAST of Csa1G001280 vs. TrEMBL
Match: A0A0A0LTY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]
BLAST of Csa1G001280 vs. TrEMBL
Match: M5WBB3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-28
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1  MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS+IIMKRFQN
Sbjct: 61 RRYLDMSMIIMKRFQN 76

[Close]
BLAST of Csa1G001280 vs. TrEMBL
Match: A0A059CY20_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00077 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-28
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD+SSLNS EL   I++EK+RAMV EMVAKLTS CWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1  MDASSLNSAELQRLISQEKERAMVNEMVAKLTSACWDKCITGTPGSKFSSSESTCLANCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMSIIIMKRFQ+
Sbjct: 61 QRYMDMSIIIMKRFQS 76

[Close]
BLAST of Csa1G001280 vs. TrEMBL
Match: W9RHB0_9ROSA (Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis GN=L484_008830 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-28
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S++NSPEL+ FIN+EK+RAM+ EMVAKLT+VCWDKCIT TPGSKFSSSE +CLSNCA
Sbjct: 1  MDPSAINSPELLQFINQEKERAMINEMVAKLTTVCWDKCITSTPGSKFSSSEQSCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS +IMKRFQN
Sbjct: 61 RRYLDMSALIMKRFQN 76

[Close]
BLAST of Csa1G001280 vs. TrEMBL
Match: F2VPS7_SOLNI (Mitochondrial import inner membrane translocase subunit OS=Solanum nigrum GN=TIM8 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.0e-28
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S+L SPEL NF+N+EK+RA++ EMV KLTS CWDKCITGTPGSKFSSSES+CL+NCA
Sbjct: 1  MDPSALQSPELQNFLNQEKERALINEMVGKLTSSCWDKCITGTPGSKFSSSESSCLTNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYM+MS+II+KRFQN
Sbjct: 61 QRYMEMSLIIVKRFQN 76

[Close]
BLAST of Csa1G001280 vs. TAIR10
Match: AT5G50810.1 (AT5G50810.1 translocase inner membrane subunit 8)

HSP 1 Score: 121.3 bits (303), Expect = 2.6e-28
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CA
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRF +
Sbjct: 61 QRYMDMSMIIMKRFNS 76

[Close]
BLAST of Csa1G001280 vs. TAIR10
Match: AT1G61570.1 (AT1G61570.1 translocase of the inner mitochondrial membrane 13)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-09
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1 

Query: 3  SSSLNSPE-LMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 62
          S S  SPE +M  +  +  +A   E++  L + C+DKC+T  PGS    SES+C+S C +
Sbjct: 12 SGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVT-KPGSSLGGSESSCISRCVE 71

Query: 63 RYMDMSIIIMK 73
          RYM+ + II +
Sbjct: 72 RYMEATAIISR 81

[Close]
BLAST of Csa1G001280 vs. NCBI nr
Match: gi|659128830|ref|XP_008464391.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 7.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]
BLAST of Csa1G001280 vs. NCBI nr
Match: gi|747053860|ref|XP_011073110.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Sesamum indicum])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-29
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SSLNSPEL  F+N+EK++AMV EM+ KLTS CWDKCITGTPGSKFSSSESNCL+NCA
Sbjct: 1  MDPSSLNSPELQQFLNQEKEKAMVTEMIGKLTSACWDKCITGTPGSKFSSSESNCLTNCA 60

Query: 61 QRYMDMSIIIMKRFQ 76
          QRYMDMS+IIMKRFQ
Sbjct: 61 QRYMDMSLIIMKRFQ 75

[Close]
BLAST of Csa1G001280 vs. NCBI nr
Match: gi|1009130374|ref|XP_015882265.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SSL +PEL+ FIN+EK+RAM+ EMVAKLT+VCWDKCITGTPGSKFSSSE +CLSNCA
Sbjct: 1  MDPSSLENPELVQFINQEKERAMLNEMVAKLTNVCWDKCITGTPGSKFSSSEQSCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS+IIMKRFQN
Sbjct: 61 RRYLDMSVIIMKRFQN 76

[Close]
BLAST of Csa1G001280 vs. NCBI nr
Match: gi|595849876|ref|XP_007209810.1| (hypothetical protein PRUPE_ppa014244mg [Prunus persica])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1  MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS+IIMKRFQN
Sbjct: 61 RRYLDMSMIIMKRFQN 76

[Close]
BLAST of Csa1G001280 vs. NCBI nr
Match: gi|694429363|ref|XP_009342209.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Pyrus x bretschneideri])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 60/76 (78.95%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S++N+PEL+NFIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1  MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS+IIMKRFQ+
Sbjct: 61 RRYLDMSMIIMKRFQS 76

The following BLAST results are available for this feature:
BLAST of Csa1G001280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIM8_ARATH4.6e-2772.37Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thal... [more]
TIM8_CRYNJ6.1e-1140.91Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo... [more]
TIM8_CRYNB6.1e-1140.91Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo... [more]
TIM8_DROME3.0e-1039.73Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melan... [more]
TIM8_SCHPO6.7e-1039.73Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomy... [more]
BLAST of Csa1G001280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTY7_CUCSA5.0e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1[more]
M5WBB3_PRUPE1.0e-2880.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1[more]
A0A059CY20_EUCGR2.9e-2882.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00077 PE=3 SV=1[more]
W9RHB0_9ROSA3.8e-2877.63Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis ... [more]
F2VPS7_SOLNI5.0e-2877.63Mitochondrial import inner membrane translocase subunit OS=Solanum nigrum GN=TIM... [more]
BLAST of Csa1G001280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50810.12.6e-2872.37 translocase inner membrane subunit 8[more]
AT1G61570.17.9e-0939.44 translocase of the inner mitochondrial membrane 13[more]
BLAST of Csa1G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128830|ref|XP_008464391.1|7.1e-36100.00PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis... [more]
gi|747053860|ref|XP_011073110.1|1.7e-2982.67PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Sesamum... [more]
gi|1009130374|ref|XP_015882265.1|1.4e-2880.26PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like iso... [more]
gi|595849876|ref|XP_007209810.1|1.4e-2880.26hypothetical protein PRUPE_ppa014244mg [Prunus persica][more]
gi|694429363|ref|XP_009342209.1|2.5e-2878.95PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Py... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004217Tim10-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0008643 carbohydrate transport
biological_process GO:0008150 biological_process
biological_process GO:0072321 chaperone-mediated protein transport
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088132cucumber EST collection version 3.0transcribed_cluster
CU106322cucumber EST collection version 3.0transcribed_cluster
CU143948cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G001280.1Csa1G001280.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106322CU106322transcribed_cluster
CU088132CU088132transcribed_cluster
CU143948CU143948transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004217Tim10/DDP family zinc fingerGENE3DG3DSA:1.10.287.810coord: 16..76
score: 4.0
IPR004217Tim10/DDP family zinc fingerPFAMPF02953zf-Tim10_DDPcoord: 13..76
score: 4.0
IPR004217Tim10/DDP family zinc fingerunknownSSF144122Tim10-likecoord: 20..76
score: 2.09

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G001280Cla019302Watermelon (97103) v1cuwmB094
Csa1G001280MELO3C026182Melon (DHL92) v3.5.1cumeB054
Csa1G001280ClCG06G018150Watermelon (Charleston Gray)cuwcgB081
Csa1G001280Lsi06G016640Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G001280MELO3C026182.2Melon (DHL92) v3.6.1cumedB046
Csa1G001280Cla97C06G127920Watermelon (97103) v2cuwmbB078
Csa1G001280CSPI01G00280Wild cucumber (PI 183967)cpicuB000
Csa1G001280Cucsa.157100Cucumber (Gy14) v1cgycuB224
Csa1G001280CmaCh11G000150Cucurbita maxima (Rimu)cmacuB086
Csa1G001280CmaCh10G000380Cucurbita maxima (Rimu)cmacuB048
Csa1G001280CmoCh11G000140Cucurbita moschata (Rifu)cmocuB076
Csa1G001280Cp4.1LG04g16430Cucurbita pepo (Zucchini)cpecuB653
Csa1G001280Cp4.1LG18g09230Cucurbita pepo (Zucchini)cpecuB361
Csa1G001280CsGy1G000290Cucumber (Gy14) v2cgybcuB001
Csa1G001280Carg10260Silver-seed gourdcarcuB0391
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G001280Melon (DHL92) v3.5.1cumeB022
Csa1G001280Melon (DHL92) v3.5.1cumeB078
Csa1G001280Watermelon (Charleston Gray)cuwcgB052
Csa1G001280Watermelon (97103) v1cuwmB028
Csa1G001280Cucurbita pepo (Zucchini)cpecuB513
Csa1G001280Bottle gourd (USVL1VR-Ls)culsiB041
Csa1G001280Cucumber (Gy14) v2cgybcuB014
Csa1G001280Cucumber (Gy14) v2cgybcuB096
Csa1G001280Melon (DHL92) v3.6.1cumedB018
Csa1G001280Silver-seed gourdcarcuB0636
Csa1G001280Watermelon (97103) v2cuwmbB050
Csa1G001280Wax gourdcuwgoB061
Csa1G001280Wax gourdcuwgoB079
Csa1G001280Cucumber (Chinese Long) v2cucuB002
Csa1G001280Cucumber (Chinese Long) v2cucuB014
Csa1G001280Cucurbita maxima (Rimu)cmacuB225
Csa1G001280Cucurbita moschata (Rifu)cmocuB037
Csa1G001280Cucurbita moschata (Rifu)cmocuB211
Csa1G001280Cucurbita moschata (Rifu)cmocuB393