CsGy1G000290 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G000290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	mitochondrial import inner membrane translocase subunit TIM8
Location	Chr1 : 154186 .. 156911 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGTGATTAGGGTTAGGGTTTACCATCCCACTCAATTTGAGATTTTCCTCGCTTCTTTCTTTGACCGATTGACTCCCTGCCTCCCTCAGGTTTCTTCCTCGTTGCCATTCTTTGATCTCTTCACGGAACTTCATCTGTTGACACTTTGTTTACCCTGCCTTTTGTCGCCCATCATACGGAGCTACACTTTTTCTGTTAAGATTTTGTTAGGGTTTTGCAGTCGGTCTCTACGTACAGCTGGTCAGATTCACGGGCTTTAACGTCTCTTCAACCTTTCTAAGTTTCCATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGTGAGTTCATTTTCGTGGTTTTTAATTGTCACTTCTTGGCTATGATTCATTCTGGATCGAGTATGAAAAATGAAATGACGGTAATCATTTGTGGTATTTGAAATAGGAAAAAAGACAAGATCTTTAATTTCCTCTCCCATGAATATGCTATTGGGTTGCTTTTTATCGCCTTTATGCATTACCTATTTAGTTCGTAGAATATCCGAGAATGGTAAAATTGATATCAGTCATGATTATTTCTTGTCAACTCTGCTACTTAGTGTCTAATAGGACATAATGTGTTTGCAAGAAACTATTTTTTAGAAGCAATGACAGAGCCCTTGAGACTGAGACCTACACTGACCCTGTCTAAAGATAAGTCTTAAGAAATGCTTTGTTGTCATCAGAACTCCTTACTCACCAGATAGTACGCTCTTGAAATTAGAATATTATGTCTACAGCAGATTTGAGTTTGTCTCTAAATCGGAAATGAATTATATTTTTATCACAGTTTGACTTTGGTCCGAAAACTTCAGAGACGTCACTTGATGATTGTACTGCTATGTGGAATATCAATGAATACAAATCTGGAAACAATACATGCTCTGACTTCTTTTTGTTTCTTTTTCTTGAAAACAGAAACAAACATTTTTTTCCGATAAGCGTATTCAATGAGTTTATCAGCCATGCAAGTAATTATAGGCTATGGAATTCCATGGGTTCATATCACTTAAAAAGATCAGAGTTTGTCTGAACTTGGGGGTTACAGTTATATGTCTTTAAGTATGATTTTGTTTATGTAAGATGTTCAATTTTATTTGCCAACAAACCATAGGTGGCAATCAGTTGACTACTCATTGTGTGTTGTCTACTCTTCACCACGCACCCTCCATCGTTTTCATTTCTGGATTTCAACCTTCCTCCCTGTTCAGTTTAGACAGAAGATGCTTTGTTTTGTGACTTCTATTTGTTGCAGTGACAAAATTTAAATGCTATTGGTCAATTATTTGATCATTTGTTAAACAGGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAAAAGGATCTCAACGTGAGGCTTGCTTTTCCAGTTACAAGACAATGTATTTTCTTGGGTATATTGTTCAATTCAAACCGATAGGCAAAAGGTTATGAATTTCTGGAAATACTGTTCATTTTTTTGAAGTTGTTGCTGCATTCCCTAAATCAAATTATTTTACATTACATCTTGATGAGAAGAGTAATGAACTGATATGGGGTATTCTGTTTCTTTCAGAGAAAAAAGAGAACGAAAATTAGGGGCATTCTGTTTTTTCTTTTTAATTTTGGCATATCAATATGTAGTTTGGAGTAATTGGAATGTGCTTTCGTTCGGGCAACCTGCTGCCTGCTTCTTTGTCATCCCAAGAGGAAGTCGCTCGACGTGGAGCACTGCCTCATATGTGTGGATGAAGATAGGCGGCAGGCGTTCCAATTTTCATGTAAGTGGCTACATGGAATAGTTTTTCCTTTCGTGAATCTTAATAAGATGACATGTCACGTTTGCACCAAGTGAATCATTTTAACACTTGGATCTGCTTCCAGCCTAAAGAAACCAATATCATCGACTTTCAGCCATCTTTATCTCTTTAAAGACTGCTATAGTTTAAGACCAATAAGATTTAAGGGTTGTGAATATTGAAGTAGCTTTGGACGTTTGAGCATACTTTTTACAATTCATGAGTTATGTCAACAGTGTAATTATTGTAGCATGAATAATATTTTATAGATAAAAAAAAAAATTAAAGGATAAAACGTTATATTATTTTCTTTGCCGTAAAAGTCATCTTTCATTGGCCTTTCCACTTCGTTTCCAATTTACCTCAATTCCCCACTATAATATCAGCTTCCAATTGATCTGATAATGACATATTGAAATTTGATTAGTAGAAGCAGACCAACCCACGACGAGGTTTAAATAATATAAACTAAAAGGGGAAGGGGTTAGAAAAGAGTAGAGATGAATATAAAGTAATAAAGAGAGATATTAGCATTTAGATGTGAAGAGTTTATAGGAATTGCGTATGGAGTTGCTTGCAAGAGCATATCTGCCATTTGGAGTCTCTTCTGTGTAGCATTCTAAATGTTGGGCTTTCTTATCTAGTCACACACGGAAACCGAATATAGCCATTTTTGTGTTCACAAGCCAACATTTAATAACAACATTTAATTATAAGTAGGAAGTCATATATACTATATCTATCTATTGTGGTTAGTTTC

mRNA sequence

AGAGGTGATTAGGGTTAGGGTTTACCATCCCACTCAATTTGAGATTTTCCTCGCTTCTTTCTTTGACCGATTGACTCCCTGCCTCCCTCAGGTTTCTTCCTCGTTGCCATTCTTTGATCTCTTCACGGAACTTCATCTGTTGACACTTTGTTTACCCTGCCTTTTGTCGCCCATCATACGGAGCTACACTTTTTCTGTTAAGATTTTGTTAGGGTTTTGCAGTCGGTCTCTACGTACAGCTGGTCAGATTCACGGGCTTTAACGTCTCTTCAACCTTTCTAAGTTTCCATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAAAAGGATCTCAACGTGAGGCTTGCTTTTCCAGTTACAAGACAATGTATTTTCTTGGGTATATTGTTCAATTCAAACCGATAGGCAAAAGGTTATGAATTTCTGGAAATACTGTTCATTTTTTTGAAGTTGTTGCTGCATTCCCTAAATCAAATTATTTTACATTACATCTTGATGAGAAGAGTAATGAACTGATATGGGGTATTCTGTTTCTTTCAGAGAAAAAAGAGAACGAAAATTAGGGGCATTCTGTTTTTTCTTTTTAATTTTGGCATATCAATATGTAGTTTGGAGTAATTGGAATGTGCTTTCGTTCGGGCAACCTGCTGCCTGCTTCTTTGTCATCCCAAGAGGAAGTCGCTCGACGTGGAGCACTGCCTCATATGTGTGGATGAAGATAGGCGGCAGGCGTTCCAATTTTCATGTAAGTGGCTACATGGAATAGTTTTTCCTTTCGTGAATCTTAATAAGATGACATGTCACGTTTGCACCAAGTGAATCATTTTAACACTTGGATCTGCTTCCAGCCTAAAGAAACCAATATCATCGACTTTCAGCCATCTTTATCTCTTTAAAGACTGCTATAGTTTAAGACCAATAAGATTTAAGGGTTGTGAATATTGAAGTAGCTTTGGACGTTTGAGCATACTTTTTACAATTCATGAGTTATGTCAACAGTGTAATTATTGTAGCATGAATAATATTTTATAGATAAAAAAAAAAATTAAAGGATAAAACGTTATATTATTTTCTTTGCCGTAAAAGTCATCTTTCATTGGCCTTTCCACTTCGTTTCCAATTTACCTCAATTCCCCACTATAATATCAGCTTCCAATTGATCTGATAATGACATATTGAAATTTGATTAGTAGAAGCAGACCAACCCACGACGAGGTTTAAATAATATAAACTAAAAGGGGAAGGGGTTAGAAAAGAGTAGAGATGAATATAAAGTAATAAAGAGAGATATTAGCATTTAGATGTGAAGAGTTTATAGGAATTGCGTATGGAGTTGCTTGCAAGAGCATATCTGCCATTTGGAGTCTCTTCTGTGTAGCATTCTAAATGTTGGGCTTTCTTATCTAGTCACACACGGAAACCGAATATAGCCATTTTTGTGTTCACAAGCCAACATTTAATAACAACATTTAATTATAAGTAGGAAGTCATATATACTATATCTATCTATTGTGGTTAGTTTC

Coding sequence (CDS)

ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACAAGTGCATAACTGGAACACCAGGGAGTAAGTTCAGCTCCAGTGAATCCAACTGTCTATCCAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAACGATTTCAAAATAGTTAA

Protein sequence

MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQNS

Homology

[Close]

BLAST of CsGy1G000290 vs. NCBI nr
Match: XP_008464391.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo] >XP_011649996.1 PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis sativus] >XP_022924732.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita moschata] >XP_022921432.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita moschata] >XP_022974369.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita maxima] >XP_022988609.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita maxima] >XP_023529319.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita pepo subsp. pepo] >XP_023516926.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita pepo subsp. pepo] >KGN63456.1 hypothetical protein Csa_1G001280 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 8.9e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]

BLAST of CsGy1G000290 vs. NCBI nr
Match: XP_022135207.1 (mitochondrial import inner membrane translocase subunit TIM8 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITG+PGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGSPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]

BLAST of CsGy1G000290 vs. NCBI nr
Match: XP_022872200.1 (mitochondrial import inner membrane translocase subunit TIM8-like [Olea europaea var. sylvestris])

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-29
Identity = 64/76 (84.21%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPEL  FI++EK++AMV EM+AKLT+VCWDKCITGTPGSKFSSSES+CL+NCA
Sbjct: 1  MDSSSLNSPELQQFISQEKEKAMVNEMIAKLTTVCWDKCITGTPGSKFSSSESSCLTNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRFQN
Sbjct: 61 QRYMDMSLIIMKRFQN 76

[Close]

BLAST of CsGy1G000290 vs. NCBI nr
Match: XP_011073110.1 (mitochondrial import inner membrane translocase subunit TIM8 [Sesamum indicum])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SSLNSPEL  F+N+EK++AMV EM+ KLTS CWDKCITGTPGSKFSSSESNCL+NCA
Sbjct: 1  MDPSSLNSPELQQFLNQEKEKAMVTEMIGKLTSACWDKCITGTPGSKFSSSESNCLTNCA 60

Query: 61 QRYMDMSIIIMKRFQ 76
          QRYMDMS+IIMKRFQ
Sbjct: 61 QRYMDMSLIIMKRFQ 75

[Close]

BLAST of CsGy1G000290 vs. NCBI nr
Match: XP_017256956.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Daucus carota subsp. sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.7e-28
Identity = 61/76 (80.26%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S+LNSP++ +FIN+EK++AM+ EMVAKLT+VCWDKC++GTPGSKFSSSESNCLSNCA
Sbjct: 1  MDPSALNSPQMQHFINQEKEKAMLNEMVAKLTNVCWDKCVSGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMSIIIMKRFQ+
Sbjct: 61 QRYMDMSIIIMKRFQS 76

[Close]

BLAST of CsGy1G000290 vs. TAIR10
Match: AT5G50810.1 (translocase inner membrane subunit 8)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-27
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CA
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRF +
Sbjct: 61 QRYMDMSMIIMKRFNS 76

[Close]

BLAST of CsGy1G000290 vs. Swiss-Prot
Match: sp|Q9XGY4|TIM8_ARATH (Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana OX=3702 GN=TIM8 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-26
Identity = 55/76 (72.37%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CA
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRF +
Sbjct: 61 QRYMDMSMIIMKRFNS 76

[Close]

BLAST of CsGy1G000290 vs. Swiss-Prot
Match: sp|Q9Y1A3|TIM8_DROME (Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster OX=7227 GN=Tim8 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-09
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 2  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 61
          ++ S N  EL  F+  EKQ+A V   + +   +CW+KCI G P +K   +   CLSNC  
Sbjct: 5  ENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVD 64

Query: 62 RYMDMSIIIMKRF 75
          R++D S++I +RF
Sbjct: 65 RFIDTSLLITQRF 76

[Close]

BLAST of CsGy1G000290 vs. Swiss-Prot
Match: sp|Q09783|TIM8_SCHPO (Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim8 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 2  DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 61
          D S     EL  FI  E+Q+  + + + + TS CW KCI G  G+K   SE  CL NC +
Sbjct: 11 DLSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCI-GNIGNKLDKSEEQCLQNCVE 70

Query: 62 RYMDMSIIIMKRF 75
          R++D +  I+KR+
Sbjct: 71 RFLDCNFHIIKRY 82

[Close]

BLAST of CsGy1G000290 vs. Swiss-Prot
Match: sp|Q4IJW4|TIM8_GIBZE (Mitochondrial import inner membrane translocase subunit TIM8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=TIM8 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 10 ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGT-PGSKFSSSESNCLSNCAQRYMDMSI 69
          EL  F+  E+QR+ +      LT +CW KC+ GT    K   SE  CL+NC +R++D++ 
Sbjct: 23 ELRQFLANEQQRSQIQAQTHSLTQMCWSKCVPGTIKNPKLDKSEETCLANCVERFLDVNY 82

Query: 70 IIMK 73
          + MK
Sbjct: 83 LTMK 86

[Close]

BLAST of CsGy1G000290 vs. Swiss-Prot
Match: sp|Q3ZBS8|TIM8A_BOVIN (Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus OX=9913 GN=TIMM8A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.2e-08
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1  MDSSSLNS--------PELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSE 60
          MDSSS +S        P+L +FI  E Q+    ++V ++T +CW+KC+   PG K  S  
Sbjct: 1  MDSSSSSSAAGLGSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRA 60

Query: 61 SNCLSNCAQRYMDMSIIIMKRFQNS 78
            C  NC +R++D S  I+ R + +
Sbjct: 61 EACFVNCVERFIDTSQFILNRLEQT 84

[Close]

BLAST of CsGy1G000290 vs. TrEMBL
Match: tr|A0A1S3CLD0|A0A1S3CLD0_CUCME (mitochondrial import inner membrane translocase subunit TIM8 OS=Cucumis melo OX=3656 GN=LOC103502294 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]

BLAST of CsGy1G000290 vs. TrEMBL
Match: tr|A0A0A0LTY7|A0A0A0LTY7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001280 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQNS 78
          QRYMDMSIIIMKRFQNS
Sbjct: 61 QRYMDMSIIIMKRFQNS 77

[Close]

BLAST of CsGy1G000290 vs. TrEMBL
Match: tr|A0A2R6QGA2|A0A2R6QGA2_ACTCH (Mitochondrial import inner membrane translocase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17989 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SSLNS EL +FIN+EK++AMV EMVAKLT+VCWDKCIT TPGSKFSSSES+CLSNCA
Sbjct: 1  MDPSSLNSAELQHFINKEKEKAMVNEMVAKLTTVCWDKCITSTPGSKFSSSESSCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMSIIIMKRFQ+
Sbjct: 61 QRYMDMSIIIMKRFQS 76

[Close]

BLAST of CsGy1G000290 vs. TrEMBL
Match: tr|M5WBB3|M5WBB3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G146200 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1  MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          +RY+DMS+IIMKRFQN
Sbjct: 61 RRYLDMSMIIMKRFQN 76

[Close]

BLAST of CsGy1G000290 vs. TrEMBL
Match: tr|A0A1U7ZGK1|A0A1U7ZGK1_NELNU (mitochondrial import inner membrane translocase subunit TIM8 OS=Nelumbo nucifera OX=4432 GN=LOC104592801 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-27
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60
          MD S+LNS EL  F+++EKQ+AMV EMVAKLT+VCWDKCITGTPGSKFSSSES CLSNCA
Sbjct: 1  MDPSALNSAELQQFLDQEKQKAMVNEMVAKLTNVCWDKCITGTPGSKFSSSESTCLSNCA 60

Query: 61 QRYMDMSIIIMKRFQN 77
          QRYMDMS+IIMKRFQ+
Sbjct: 61 QRYMDMSLIIMKRFQS 76

The following BLAST results are available for this feature:

BLAST of CsGy1G000290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464391.1	8.9e-35	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis...	[more]
XP_022135207.1	2.6e-34	98.70	mitochondrial import inner membrane translocase subunit TIM8 [Momordica charanti...	[more]
XP_022872200.1	4.3e-29	84.21	mitochondrial import inner membrane translocase subunit TIM8-like [Olea europaea...	[more]
XP_011073110.1	2.1e-28	82.67	mitochondrial import inner membrane translocase subunit TIM8 [Sesamum indicum]	[more]
XP_017256956.1	4.7e-28	80.26	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Da...	[more]

BLAST of CsGy1G000290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50810.1	1.7e-27	72.37	translocase inner membrane subunit 8	[more]

BLAST of CsGy1G000290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XGY4\|TIM8_ARATH	3.0e-26	72.37	Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thal...	[more]
sp\|Q9Y1A3\|TIM8_DROME	2.0e-09	39.73	Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melan...	[more]
sp\|Q09783\|TIM8_SCHPO	4.4e-09	39.73	Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomy...	[more]
sp\|Q4IJW4\|TIM8_GIBZE	3.7e-08	39.06	Mitochondrial import inner membrane translocase subunit TIM8 OS=Gibberella zeae ...	[more]
sp\|Q3ZBS8\|TIM8A_BOVIN	8.2e-08	35.29	Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus OX=...	[more]

BLAST of CsGy1G000290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLD0\|A0A1S3CLD0_CUCME	5.9e-35	100.00	mitochondrial import inner membrane translocase subunit TIM8 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0LTY7\|A0A0A0LTY7_CUCSA	5.9e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001280 PE=3 SV=1	[more]
tr\|A0A2R6QGA2\|A0A2R6QGA2_ACTCH	9.1e-28	84.21	Mitochondrial import inner membrane translocase OS=Actinidia chinensis var. chin...	[more]
tr\|M5WBB3\|M5WBB3_PRUPE	1.2e-27	80.26	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G146200 PE=3 SV=1	[more]
tr\|A0A1U7ZGK1\|A0A1U7ZGK1_NELNU	2.6e-27	81.58	mitochondrial import inner membrane translocase subunit TIM8 OS=Nelumbo nucifera...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005758	mitochondrial intermembrane space

Vocabulary: **Biological Process**
Term	Definition
GO:0072321	chaperone-mediated protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR039238	Tim8/13
IPR004217	Tim10-like
IPR035427	Tim10-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G000290.1	CsGy1G000290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035427	Tim10-like domain superfamily	GENE3D	G3DSA:1.10.287.810		coord: 15..77 e-value: 1.4E-24 score: 87.3
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	SSF144122	Tim10-like	coord: 20..76
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 13..75 e-value: 3.3E-25 score: 87.4
None	No IPR available	PANTHER	PTHR19338:SF4	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8 A	coord: 1..76
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G000290	Cla019302	Watermelon (97103) v1	cgybwmB094
CsGy1G000290	Csa1G001280	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G000290	MELO3C026182	Melon (DHL92) v3.5.1	cgybmeB048
CsGy1G000290	ClCG06G018150	Watermelon (Charleston Gray)	cgybwcgB078
CsGy1G000290	CSPI01G00280	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G000290	CmaCh11G000150	Cucurbita maxima (Rimu)	cgybcmaB028
CsGy1G000290	CmoCh11G000140	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G000290	Cp4.1LG04g16430	Cucurbita pepo (Zucchini)	cgybcpeB126
CsGy1G000290	MELO3C026182.2	Melon (DHL92) v3.6.1	cgybmedB043
CsGy1G000290	CsaV3_1G000290	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G000290	Cla97C06G127920	Watermelon (97103) v2	cgybwmbB076
CsGy1G000290	Carg10260	Silver-seed gourd	carcgybB0371

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G000290	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G000290	Cucurbita maxima (Rimu)	cgybcmaB004
CsGy1G000290	Cucurbita maxima (Rimu)	cgybcmaB045
CsGy1G000290	Cucurbita maxima (Rimu)	cgybcmaB081
CsGy1G000290	Cucurbita moschata (Rifu)	cgybcmoB005
CsGy1G000290	Cucurbita moschata (Rifu)	cgybcmoB032
CsGy1G000290	Cucurbita moschata (Rifu)	cgybcmoB076
CsGy1G000290	Cucurbita moschata (Rifu)	cgybcmoB097
CsGy1G000290	Cucurbita pepo (Zucchini)	cgybcpeB015
CsGy1G000290	Cucurbita pepo (Zucchini)	cgybcpeB053
CsGy1G000290	Cucurbita pepo (Zucchini)	cgybcpeB078
CsGy1G000290	Cucurbita pepo (Zucchini)	cgybcpeB117
CsGy1G000290	Cucumber (Chinese Long) v2	cgybcuB012
CsGy1G000290	Bottle gourd (USVL1VR-Ls)	cgyblsiB035
CsGy1G000290	Bottle gourd (USVL1VR-Ls)	cgyblsiB067
CsGy1G000290	Melon (DHL92) v3.5.1	cgybmeB020
CsGy1G000290	Melon (DHL92) v3.6.1	cgybmedB017
CsGy1G000290	Watermelon (Charleston Gray)	cgybwcgB048
CsGy1G000290	Watermelon (97103) v1	cgybwmB028
CsGy1G000290	Wild cucumber (PI 183967)	cgybcpiB012
CsGy1G000290	Silver-seed gourd	carcgybB0608
CsGy1G000290	Cucumber (Chinese Long) v3	cgybcucB011
CsGy1G000290	Watermelon (97103) v2	cgybwmbB048
CsGy1G000290	Wax gourd	cgybwgoB060
CsGy1G000290	Wax gourd	cgybwgoB077