Cp4.1LG04g16430 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g16430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mitochondrial import inner membrane translocase subunit Tim8
Location	Cp4.1LG04 : 12635131 .. 12637066 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCTGAAACCAATCAAGAAAGCCGACGTAGGCCCATTAGGCCTGTCTTTGAAACGGACTACAGCCCAATTGAGGTTTGTTAGGCCTGGCTTTTGTCGCCCATCACGAAGGCAGACTCGCCGTTTTCCTCCCACTTTCTCCTTTCCTGGGCGTTAGGGTTTTGCAGTCAGCACGGCTGGGAGCATTCGCGGGCTTTACAGACTCAATCGTTTGGCGGCCTTCAACCTTCCTAAGTTGCCATGGATTCCTCGTCTCTTAACTCCCCAGAGCTGATGAATTTTATCAATGTGAGTTCCTTATCGCCTTCTTTTAATTGTCACTTCTACGTTCTGATTCGTGTGGGATCGAACCATAAAAAAGACTGCAACTCTTGATCTCTAATTGTTTCTCGTCTTTGAACTCAATATCATATACATATCTATGATATGAAATCCGAACGTAGAGAATTTCTGATTTTCTTTTGACATGAATATGCTATTTGGTTGCTTTTTTTATTGTCTCTATATACATCCCCTGTTTACTTTGTAGAATGTGCGAGGGTGGTGAAATTGATATCAGTTAAGACTGTTTCTTTGCTTTCTAATTTATAGGGGAGTGACAGCTCTGATATGTATTCATGAACCATTTAGTGTCAAATTGATTGTAATACTTTTGCAAGAAACTGTTACGTAACTGCAATGAACAGAGTGCTTGAAACAGAGGTTCATATTGACCCGGTTAAATGACAAGCATTAACCTCTTGAAAGTAGCCTGTTATATTTTCAGATTTTAGTTAGATTCACTGAGCCTAGGAGAAACATATTTTGATTATATTTTATATCAAAGAGTTTGAACTCTCTAGGTTGTAGAAGCAACTTCTTAATTTCCTTCAAGACGAGCTTTGGGGGTGTAATTTGGTCTGAAGACTTCAGAGATGCCACTTGATGATTGTACTACTTTGTGGAATATGAATGTATCCTAATCTTGGAACGATACATGGCGCTGAGTTGTTAATATGGGTTTTCTAGGAAACAGAAAGAAACATTTTCCATACAAATATATTCAATATGTACAACCACCATGCAAGTTATAATAGGCTATAGAGTTCCTTGGGTTCATATCACTTAAAAGATCTGAGTTTGTCTGAATTTGAGGTTACAGTCATGTTTCTTTTTAAAGTATGATTTAAGTTTGCATAATATCTTCAATTTGATAATATTCATAATTGAATGCCATTGACATTGTGTTTTTATTGGTTTAACATTCCATGGGGGCAATTTGTTGACTCCGAAATCTGTGTTGCCTGCCCTTAAACTGCACAACCTCCAGCGTTTTCATTTCTGGATTTGACCCCTCCCTTCGAGAGTGTAGATAGCAGGATGCTTTGTTGTTGACTTCTATTTGTCAAAATTTAATGCTATTGGTAAAGTATTTGGTCATTTTGATTAACAGGAAGAGAAGCAAAGAGCCATGGTTGCGGAGATGGTGGCTAAGCTTACCAGTGTGTGTTGGGACAAGTGTATCACTGGTACGCCTGGGAGTAAGTTCAGCTCCAGTGAATCTAACTGTCTATCTAACTGTGCACAACGCTATATGGATATGAGCATCATCATTATGAAACGATTCCAAAACAGTTAATGGATCTCAACGGGAGGAAGATGTTCCGGTTACAAGACAAACATATTTTCTTGGATCTATTGTTCAATTTAAACCAAAAGAAAAAGGGTCTAGACTTGCGGAAATATTGTTCATTTTTTAAAGTTGATGCATTGCCCAAATCAGATTATCTTACATCTTGATAAGAAAGTTACCGAACTGAAATGGTGTAGCCCATTGTAGTTTTTGATATGTAGGTGTTGTTGAGTTTATGCTTTCGATTTCAACTAGCTGCGTCCCTGAAATTCCAAGAGGAAGGGCTCGATGTGGAGCACTGCCTCTAAGTTTGGATGAAACGAAA

mRNA sequence

TGGCTGAAACCAATCAAGAAAGCCGACGTAGGCCCATTAGGCCTGTCTTTGAAACGGACTACAGCCCAATTGAGGTTTGTTAGGCCTGGCTTTTGTCGCCCATCACGAAGGCAGACTCGCCGTTTTCCTCCCACTTTCTCCTTTCCTGGGCGTTAGGGTTTTGCAGTCAGCACGGCTGGGAGCATTCGCGGGCTTTACAGACTCAATCGTTTGGCGGCCTTCAACCTTCCTAAGTTGCCATGGATTCCTCGTCTCTTAACTCCCCAGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCCATGGTTGCGGAGATGGTGGCTAAGCTTACCAGTGTGTGTTGGGACAAGTGTATCACTGGTACGCCTGGGAGTGTTGTTGAGTTTATGCTTTCGATTTCAACTAGCTGCGTCCCTGAAATTCCAAGAGGAAGGGCTCGATGTGGAGCACTGCCTCTAAGTTTGGATGAAACGAAA

Coding sequence (CDS)

ATGGATTCCTCGTCTCTTAACTCCCCAGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCCATGGTTGCGGAGATGGTGGCTAAGCTTACCAGTGTGTGTTGGGACAAGTGTATCACTGGTACGCCTGGGAGTGTTGTTGAGTTTATGCTTTCGATTTCAACTAGCTGCGTCCCTGAAATTCCAAGAGGAAGGGCTCGATGTGGAGCACTGCCTCTAAGTTTGGATGAAACGAAA

Protein sequence

MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSVVEFMLSISTSCVPEIPRGRARCGALPLSLDETK

Homology

[Close]

BLAST of Cp4.1LG04g16430 vs. Swiss-Prot
Match: TIM8_ARATH (Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGS
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. TrEMBL
Match: A0A0A0LTY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. TrEMBL
Match: Q9XGY3_MALDO (Small zinc finger-like protein (Fragment) OS=Malus domestica GN=TIM8 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-13
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S++N+PEL+NFIN+EK+RAMV EMV KLT+VCWDKCITGTPGS
Sbjct: 1  MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. TrEMBL
Match: M5WBB3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGS
Sbjct: 1  MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. TrEMBL
Match: B9I3W6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10520g PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSVVEFMLSISTSCVP 60
          MD S+LNSPEL  F+ EEK+RAMV EMVAKLTS CWDKCITGTPGS +    S  +SC+ 
Sbjct: 1  MDPSALNSPELERFLTEEKERAMVNEMVAKLTSACWDKCITGTPGSKLS---SSESSCLS 60

Query: 61 EIPR 65
             R
Sbjct: 61 NCAR 61

[Close]

BLAST of Cp4.1LG04g16430 vs. TrEMBL
Match: W9RHB0_9ROSA (Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis GN=L484_008830 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S++NSPEL+ FIN+EK+RAM+ EMVAKLT+VCWDKCIT TPGS
Sbjct: 1  MDPSAINSPELLQFINQEKERAMINEMVAKLTTVCWDKCITSTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. TAIR10
Match: AT5G50810.1 (AT5G50810.1 translocase inner membrane subunit 8)

HSP 1 Score: 70.1 bits (170), Expect = 7.1e-13
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGS
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. NCBI nr
Match: gi|659128830|ref|XP_008464391.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. NCBI nr
Match: gi|5107157|gb|AAD39991.1|AF150084_1 (small zinc finger-like protein [Malus domestica])

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S++N+PEL+NFIN+EK+RAMV EMV KLT+VCWDKCITGTPGS
Sbjct: 1  MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. NCBI nr
Match: gi|694429363|ref|XP_009342209.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Pyrus x bretschneideri])

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-13
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD S++N+PEL+NFIN+EK+RAMV EMV KLT+VCWDKCITGTPGS
Sbjct: 1  MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGS 46

[Close]

BLAST of Cp4.1LG04g16430 vs. NCBI nr
Match: gi|224122114|ref|XP_002318756.1| (hypothetical protein POPTR_0012s10520g [Populus trichocarpa])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSVVEFMLSISTSCVP 60
          MD S+LNSPEL  F+ EEK+RAMV EMVAKLTS CWDKCITGTPGS +    S  +SC+ 
Sbjct: 1  MDPSALNSPELERFLTEEKERAMVNEMVAKLTSACWDKCITGTPGSKLS---SSESSCLS 60

Query: 61 EIPR 65
             R
Sbjct: 61 NCAR 61

[Close]

BLAST of Cp4.1LG04g16430 vs. NCBI nr
Match: gi|595849876|ref|XP_007209810.1| (hypothetical protein PRUPE_ppa014244mg [Prunus persica])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGS 47
          MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGS
Sbjct: 1  MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGS 46

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g16430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM8_ARATH	1.3e-11	67.39	Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thal...	[more]

BLAST of Cp4.1LG04g16430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTY7_CUCSA	4.0e-17	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1	[more]
Q9XGY3_MALDO	4.6e-13	78.26	Small zinc finger-like protein (Fragment) OS=Malus domestica GN=TIM8 PE=2 SV=1	[more]
M5WBB3_PRUPE	1.0e-12	78.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1	[more]
B9I3W6_POPTR	1.0e-12	64.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10520g PE=3 SV=1	[more]
W9RHB0_9ROSA	2.3e-12	76.09	Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis ...	[more]

BLAST of Cp4.1LG04g16430 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50810.1	7.1e-13	67.39	translocase inner membrane subunit 8	[more]

BLAST of Cp4.1LG04g16430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128830\|ref\|XP_008464391.1\|	5.8e-17	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis...	[more]
gi\|5107157\|gb\|AAD39991.1\|AF150084_1	6.6e-13	78.26	small zinc finger-like protein [Malus domestica]	[more]
gi\|694429363\|ref\|XP_009342209.1\|	6.6e-13	78.26	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Py...	[more]
gi\|224122114\|ref\|XP_002318756.1\|	1.5e-12	64.06	hypothetical protein POPTR_0012s10520g [Populus trichocarpa]	[more]
gi\|595849876\|ref\|XP_007209810.1\|	1.5e-12	78.26	hypothetical protein PRUPE_ppa014244mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g16430.1	Cp4.1LG04g16430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 16..46 score: 8.
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 13..46 score: 2.
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 20..46 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g16430	Cucsa.157100	Cucumber (Gy14) v1	cgycpeB0422
Cp4.1LG04g16430	CmaCh11G000150	Cucurbita maxima (Rimu)	cmacpeB155
Cp4.1LG04g16430	CmoCh11G000140	Cucurbita moschata (Rifu)	cmocpeB129
Cp4.1LG04g16430	Cla019302	Watermelon (97103) v1	cpewmB679
Cp4.1LG04g16430	Csa1G001280	Cucumber (Chinese Long) v2	cpecuB653
Cp4.1LG04g16430	MELO3C026182	Melon (DHL92) v3.5.1	cpemeB615
Cp4.1LG04g16430	ClCG06G018150	Watermelon (Charleston Gray)	cpewcgB616
Cp4.1LG04g16430	CSPI01G00280	Wild cucumber (PI 183967)	cpecpiB656
Cp4.1LG04g16430	MELO3C026182.2	Melon (DHL92) v3.6.1	cpemedB727
Cp4.1LG04g16430	CsaV3_1G000290	Cucumber (Chinese Long) v3	cpecucB0814
Cp4.1LG04g16430	CsGy1G000290	Cucumber (Gy14) v2	cgybcpeB126
Cp4.1LG04g16430	Carg10260	Silver-seed gourd	carcpeB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g16430	Wax gourd	cpewgoB0870
Cp4.1LG04g16430	Wax gourd	cpewgoB0900
Cp4.1LG04g16430	Cucurbita pepo (Zucchini)	cpecpeB361
Cp4.1LG04g16430	Cucurbita pepo (Zucchini)	cpecpeB443
Cp4.1LG04g16430	Cucurbita pepo (Zucchini)	cpecpeB491
Cp4.1LG04g16430	Cucurbita maxima (Rimu)	cmacpeB094
Cp4.1LG04g16430	Cucurbita moschata (Rifu)	cmocpeB070
Cp4.1LG04g16430	Wild cucumber (PI 183967)	cpecpiB652
Cp4.1LG04g16430	Cucumber (Chinese Long) v2	cpecuB648
Cp4.1LG04g16430	Bottle gourd (USVL1VR-Ls)	cpelsiB538
Cp4.1LG04g16430	Bottle gourd (USVL1VR-Ls)	cpelsiB556
Cp4.1LG04g16430	Watermelon (Charleston Gray)	cpewcgB602
Cp4.1LG04g16430	Watermelon (97103) v1	cpewmB646
Cp4.1LG04g16430	Melon (DHL92) v3.5.1	cpemeB603
Cp4.1LG04g16430	Cucumber (Gy14) v2	cgybcpeB123
Cp4.1LG04g16430	Cucumber (Gy14) v2	cgybcpeB421
Cp4.1LG04g16430	Melon (DHL92) v3.6.1	cpemedB713
Cp4.1LG04g16430	Silver-seed gourd	carcpeB0864
Cp4.1LG04g16430	Silver-seed gourd	carcpeB1402
Cp4.1LG04g16430	Cucumber (Chinese Long) v3	cpecucB0808
Cp4.1LG04g16430	Cucumber (Chinese Long) v3	cpecucB0844