CU106322 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU106322
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 154940 .. 156714 (-)
Sequence length780
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTCCCCTAATTTTCGTTCTCTTTTTTCTCTGAAAGAAACAGAATACCCCATATCAGTTCATTACTCTTCTCATCAAGATGTAATGTAAAATAATTTGATTTAGGGAATGCAGCAACAACTTCAAAAAAATGAACAGTATTTCCAGAAATTCATAACCTTTTGCCTATCGGTTTGAATTGAACAATATACCCAAGAAAATACATTGTCTTGTAACTGGAAAAGCAAGCCTCACGTTGAGATCCTTTTAACTATTTTGAAATCGTTTCATAATGATGATGCTCATATCCATATAGCGCTGGGCACAGTTGGATAGACAGTTGGATTCACTGGAGCTGAACTTACTCCCTGGTGTTCCAGTTATGCACTTGTCCCAACAGACACTGGTAAGCTTAGCCACCATCTCAGCAACCATAGCTCTTTGCTTCTCTTCATTGATAAAATTCATCAGCTCCGGGGAGTTAAGAGACGAGGAATCCATGGAAACTTAGAAAGGTTGAAGAGACGTTAAAGCCCGTGAATCTGACCAGCTGTACGTAGAGACCGACTGCAAAACCCTAACAAAATCTTAACAGAAAAAGTGTAGCTCCGTATGATGGGCGACAAAAGGCAGGGTAAACAAAGTGTCAACAGATGAAGTTCCGTGAAGAGATCAAAGAATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGGTAAACCCTAACCCTAATCACCTCTCATCCCCCCGGCCG
Homology
[Close]
BLAST of CU106322 vs. Swiss-Prot
Match: TIM8_ARATH (Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD S  N+PEL+ F+ +EK+RAMV EMV+K+TSVCWDKCIT  PGSKFSSSES+CL++CA
Sbjct: 1   MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           QRYMDMS+IIMKRF +
Sbjct: 61  QRYMDMSMIIMKRFNS 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. Swiss-Prot
Match: TIM8_CRYNJ (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIM8 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = -3 

Query: 254 ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSII 313
           EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ 
Sbjct: 17  ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 314 IMKRFQ 373
           I+++ +
Sbjct: 77  IVRQIE 82

Query: 374  433
           
Sbjct: 137  82

Query: 434  452
           
Sbjct: 197  82

[Close]
BLAST of CU106322 vs. Swiss-Prot
Match: TIM8_CRYNB (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIM8 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = -3 

Query: 254 ELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSII 313
           EL +F+ +E+ +A +   + +LT+ CW+ CITG   SKFS SE+ CL NC  R++D S+ 
Sbjct: 17  ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 314 IMKRFQ 373
           I+++ +
Sbjct: 77  IVRQIE 82

Query: 374  433
           
Sbjct: 137  82

Query: 434  452
           
Sbjct: 197  82

[Close]
BLAST of CU106322 vs. Swiss-Prot
Match: TIM8_DROME (Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-09
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = -3 

Query: 257 DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 316
           ++ S N  EL  F+  EKQ+A V   + +   +CW+KCI G P +K   +   CLSNC  
Sbjct: 5   ENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVD 64

Query: 317 RYMDMSIIIMKRF 376
           R++D S++I +RF
Sbjct: 65  RFIDTSLLITQRF 76

Query: 377  436
           
Sbjct: 125  76

Query: 437  476
           
Sbjct: 185  76

[Close]
BLAST of CU106322 vs. Swiss-Prot
Match: TIM8_SCHPO (Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim8 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = -3 

Query: 257 DSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQ 316
           D S     EL  FI  E+Q+  + + + + TS CW KCI G  G+K   SE  CL NC +
Sbjct: 11  DLSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCI-GNIGNKLDKSEEQCLQNCVE 70

Query: 317 RYMDMSIIIMKRF 376
           R++D +  I+KR+
Sbjct: 71  RFLDCNFHIIKRY 82

Query: 377  436
           
Sbjct: 131  82

Query: 437  476
           
Sbjct: 191  82

[Close]
BLAST of CU106322 vs. TrEMBL
Match: A0A0A0LTY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -3 

Query: 248 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 307
           MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1   MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 308 QRYMDMSIIIMKRFQNS 367
           QRYMDMSIIIMKRFQNS
Sbjct: 61  QRYMDMSIIIMKRFQNS 77

Query: 368  427
           
Sbjct: 121  77

Query: 428  479
           
Sbjct: 181  77

[Close]
BLAST of CU106322 vs. TrEMBL
Match: M5WBB3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.3e-28
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1   MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           +RY+DMS+IIMKRFQN
Sbjct: 61  RRYLDMSMIIMKRFQN 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. TrEMBL
Match: A0A059CY20_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00077 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-28
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD+SSLNS EL   I++EK+RAMV EMVAKLTS CWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1   MDASSLNSAELQRLISQEKERAMVNEMVAKLTSACWDKCITGTPGSKFSSSESTCLANCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           QRYMDMSIIIMKRFQ+
Sbjct: 61  QRYMDMSIIIMKRFQS 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. TrEMBL
Match: W9RHB0_9ROSA (Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis GN=L484_008830 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD S++NSPEL+ FIN+EK+RAM+ EMVAKLT+VCWDKCIT TPGSKFSSSE +CLSNCA
Sbjct: 1   MDPSAINSPELLQFINQEKERAMINEMVAKLTTVCWDKCITSTPGSKFSSSEQSCLSNCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           +RY+DMS +IMKRFQN
Sbjct: 61  RRYLDMSALIMKRFQN 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. TrEMBL
Match: M1CKN9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027040 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD S+L SPEL +F+N+EK+RAM+ EMV KLTS CWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1   MDPSALKSPELQHFLNQEKERAMINEMVGKLTSACWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           QRYM+MS++I+KRFQ+
Sbjct: 61  QRYMEMSLMIVKRFQS 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. NCBI nr
Match: gi|659128830|ref|XP_008464391.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = -3 

Query: 248 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 307
           MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA
Sbjct: 1   MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 308 QRYMDMSIIIMKRFQNS 367
           QRYMDMSIIIMKRFQNS
Sbjct: 61  QRYMDMSIIIMKRFQNS 77

Query: 368  427
           
Sbjct: 121  77

Query: 428  479
           
Sbjct: 181  77

[Close]
BLAST of CU106322 vs. NCBI nr
Match: gi|747053860|ref|XP_011073110.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Sesamum indicum])

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = -3 

Query: 254 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 313
           MD SSLNSPEL  F+N+EK++AMV EM+ KLTS CWDKCITGTPGSKFSSSESNCL+NCA
Sbjct: 1   MDPSSLNSPELQQFLNQEKEKAMVTEMIGKLTSACWDKCITGTPGSKFSSSESNCLTNCA 60

Query: 314 QRYMDMSIIIMKRFQ 373
           QRYMDMS+IIMKRFQ
Sbjct: 61  QRYMDMSLIIMKRFQ 75

Query: 374  433
           
Sbjct: 121  75

Query: 434  479
           
Sbjct: 181  75

[Close]
BLAST of CU106322 vs. NCBI nr
Match: gi|1009130374|ref|XP_015882265.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD SSL +PEL+ FIN+EK+RAM+ EMVAKLT+VCWDKCITGTPGSKFSSSE +CLSNCA
Sbjct: 1   MDPSSLENPELVQFINQEKERAMLNEMVAKLTNVCWDKCITGTPGSKFSSSEQSCLSNCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           +RY+DMS+IIMKRFQN
Sbjct: 61  RRYLDMSVIIMKRFQN 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. NCBI nr
Match: gi|595849876|ref|XP_007209810.1| (hypothetical protein PRUPE_ppa014244mg [Prunus persica])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD SS+N+PEL+ FIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1   MDPSSMNNPELLQFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           +RY+DMS+IIMKRFQN
Sbjct: 61  RRYLDMSMIIMKRFQN 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

[Close]
BLAST of CU106322 vs. NCBI nr
Match: gi|694429363|ref|XP_009342209.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Pyrus x bretschneideri])

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 60/76 (78.95%), Postives = 72/76 (94.74%), Query Frame = -3 

Query: 251 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 310
           MD S++N+PEL+NFIN+EK+RAMV EMV KLT+VCWDKCITGTPGSKFSSSES CL+NCA
Sbjct: 1   MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 311 QRYMDMSIIIMKRFQN 370
           +RY+DMS+IIMKRFQ+
Sbjct: 61  RRYLDMSMIIMKRFQS 76

Query: 371  430
           
Sbjct: 121  76

Query: 431  479
           
Sbjct: 181  76

The following BLAST results are available for this feature:
BLAST of CU106322 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIM8_ARATH1.5e-2672.37Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thal... [more]
TIM8_CRYNJ2.0e-1040.91Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo... [more]
TIM8_CRYNB2.0e-1040.91Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo... [more]
TIM8_DROME1.0e-0939.73Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melan... [more]
TIM8_SCHPO2.2e-0939.73Mitochondrial import inner membrane translocase subunit tim8 OS=Schizosaccharomy... [more]
BLAST of CU106322 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTY7_CUCSA1.6e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001280 PE=3 SV=1[more]
M5WBB3_PRUPE3.3e-2880.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014244mg PE=3 SV=1[more]
A0A059CY20_EUCGR9.7e-2882.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00077 PE=3 SV=1[more]
W9RHB0_9ROSA1.3e-2777.63Mitochondrial import inner membrane translocase subunit Tim8 OS=Morus notabilis ... [more]
M1CKN9_SOLTU1.7e-2777.63Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027040 PE=3 SV=1[more]
BLAST of CU106322 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128830|ref|XP_008464391.1|6.9e-35100.00PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis... [more]
gi|747053860|ref|XP_011073110.1|2.1e-2882.67PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Sesamum... [more]
gi|1009130374|ref|XP_015882265.1|1.8e-2780.26PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like iso... [more]
gi|595849876|ref|XP_007209810.1|1.8e-2780.26hypothetical protein PRUPE_ppa014244mg [Prunus persica][more]
gi|694429363|ref|XP_009342209.1|3.1e-2778.95PREDICTED: mitochondrial import inner membrane translocase subunit TIM8-like [Py... [more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR004217Tim10-like
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G001280Csa1G001280gene
Csa1G001270Csa1G001270gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KITLDFKNP3UI02KITLDEST
FKNP3UI02KYW5DFKNP3UI02KYW5DEST
FKNP3UI02LE5N6FKNP3UI02LE5N6EST
FKNP3UI02LYI2IFKNP3UI02LYI2IEST
FKNP3UI02N1F0EFKNP3UI02N1F0EEST
FKNP3UI02NEA35FKNP3UI02NEA35EST
FKNP3UI02NK1IDFKNP3UI02NK1IDEST
FKNP3UI02O3UX8FKNP3UI02O3UX8EST
FKNP3UI02OY3MUFKNP3UI02OY3MUEST
G0002000G0002000EST
G0011356G0011356EST
G0016474G0016474EST
G0082915G0082915EST
G0090378G0090378EST
G0091238G0091238EST
G0100566G0100566EST
G0107811G0107811EST
G0114630G0114630EST
G0123871G0123871EST
G0133476G0133476EST
G0138229G0138229EST
G0149378G0149378EST
G0154205G0154205EST
G0163875G0163875EST
G0165649G0165649EST
G0169412G0169412EST
G0186844G0186844EST
G0200312G0200312EST
G0208274G0208274EST
H0024552H0024552EST
H0025204H0025204EST
H0065742H0065742EST
H0084467H0084467EST
H0106032H0106032EST
H0112160H0112160EST
H0116764H0116764EST
H0156467H0156467EST
H0156960H0156960EST
H0191432H0191432EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004217Tim10/DDP family zinc fingerGENE3DG3DSA:1.10.287.810coord: 16..76
score: 4.0
IPR004217Tim10/DDP family zinc fingerPFAMPF02953zf-Tim10_DDPcoord: 13..76
score: 4.0
IPR004217Tim10/DDP family zinc fingerunknownSSF144122Tim10-likecoord: 20..76
score: 2.09