Csa1G001270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G001270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 154784 .. 155053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGGTAAACCCTAACCCTAATCACCTCTCATCAGAAGCAAAGAGGTGTGACCATGGGCGAACAAGTTAAGCTTTAGTGGGCCAAATTGCTTGCATGAGGCCCATTTTTCTTAAGAGGCTGAAGAGGAGCCAGGTGGAATTTGGGCTGGACTGGGCAGGCAGTCAATGAGTAAAAAAAGAGATGAATAA

mRNA sequence

ATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGAGGCTGAAGAGGAGCCAGGTGGAATTTGGGCTGGACTGGGCAGGCAGTCAATGAGTAAAAAAAGAGATGAATAA

Coding sequence (CDS)

ATGGCAACGAGGAAGAAACCTGAGGGAGGCAGGGAGTCAATCGGTCAAAGAAAGAAGCGAGGAAAATCTCAAATTGAGTGGGATGAGGCTGAAGAGGAGCCAGGTGGAATTTGGGCTGGACTGGGCAGGCAGTCAATGAGTAAAAAAAGAGATGAATAA

Protein sequence

MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE*
Homology
[Close]
BLAST of Csa1G001270 vs. TrEMBL
Match: A0A0A0LNH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001270 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.2e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE 53
          MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE
Sbjct: 1  MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE 52

[Close]
BLAST of Csa1G001270 vs. NCBI nr
Match: gi|700208359|gb|KGN63455.1| (hypothetical protein Csa_1G001270 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 8.9e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE 53
          MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE
Sbjct: 1  MATRKKPEGGRESIGQRKKRGKSQIEWDEAEEEPGGIWAGLGRQSMSKKRDE 52

The following BLAST results are available for this feature:
BLAST of Csa1G001270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH3_CUCSA6.2e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001270 PE=4 SV=1[more]
BLAST of Csa1G001270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208359|gb|KGN63455.1|8.9e-22100.00hypothetical protein Csa_1G001270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000460 maturation of 5.8S rRNA
biological_process GO:0043628 ncRNA 3'-end processing
biological_process GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process
biological_process GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000178 exosome (RNase complex)
cellular_component GO:0031981 nuclear lumen
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106322cucumber EST collection version 3.0transcribed_cluster
CU123940cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G001270.1Csa1G001270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU123940CU123940transcribed_cluster
CU106322CU106322transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G001270CsGy1G000280Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G001270Silver-seed gourdcarcuB0391
Csa1G001270Silver-seed gourdcarcuB0636
Csa1G001270Watermelon (97103) v2cuwmbB050
Csa1G001270Watermelon (97103) v2cuwmbB078
Csa1G001270Wax gourdcuwgoB061
Csa1G001270Wax gourdcuwgoB079
Csa1G001270Cucumber (Chinese Long) v2cucuB002
Csa1G001270Cucumber (Chinese Long) v2cucuB014
Csa1G001270Watermelon (97103) v1cuwmB094
Csa1G001270Cucumber (Gy14) v1cgycuB224
Csa1G001270Cucurbita maxima (Rimu)cmacuB048
Csa1G001270Cucurbita maxima (Rimu)cmacuB086
Csa1G001270Cucurbita maxima (Rimu)cmacuB225
Csa1G001270Cucurbita moschata (Rifu)cmocuB076
Csa1G001270Cucurbita moschata (Rifu)cmocuB037
Csa1G001270Cucurbita moschata (Rifu)cmocuB211
Csa1G001270Cucurbita moschata (Rifu)cmocuB393
Csa1G001270Melon (DHL92) v3.5.1cumeB022
Csa1G001270Melon (DHL92) v3.5.1cumeB054
Csa1G001270Melon (DHL92) v3.5.1cumeB078
Csa1G001270Watermelon (Charleston Gray)cuwcgB052
Csa1G001270Watermelon (Charleston Gray)cuwcgB081
Csa1G001270Watermelon (97103) v1cuwmB028
Csa1G001270Cucurbita pepo (Zucchini)cpecuB361
Csa1G001270Cucurbita pepo (Zucchini)cpecuB513
Csa1G001270Cucurbita pepo (Zucchini)cpecuB653
Csa1G001270Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G001270Bottle gourd (USVL1VR-Ls)culsiB041
Csa1G001270Cucumber (Gy14) v2cgybcuB014
Csa1G001270Cucumber (Gy14) v2cgybcuB096
Csa1G001270Melon (DHL92) v3.6.1cumedB018
Csa1G001270Melon (DHL92) v3.6.1cumedB046