CsGy5G005360 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G005360
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 3454264 .. 3454707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCCATTCTAGAACTTGCTGCTGACGCAACTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTCATCTTCTTCACCTCAAGACCAGCCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAATACAACAGAGCAAAATTCCATGCTTCAGAAAGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTGAACTTCAATTGCAATGTTGATGTTGAACAGAGTGATGATGATAATGAGGATGATTATGAAGATGAAGATGAAGATGAAGATGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCCAATAG

mRNA sequence

ATGGCTGATTCCATTCTAGAACTTGCTGCTGACGCAACTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTCATCTTCTTCACCTCAAGACCAGCCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAATACAACAGAGCAAAATTCCATGCTTCAGAAAGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTGAACTTCAATTGCAATGTTGATGTTGAACAGAGTGATGATGATAATGAGGATGATTATGAAGATGAAGATGAAGATGAAGATGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCCAATAG

Coding sequence (CDS)

ATGGCTGATTCCATTCTAGAACTTGCTGCTGACGCAACTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTCATCTTCTTCACCTCAAGACCAGCCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAATACAACAGAGCAAAATTCCATGCTTCAGAAAGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTGAACTTCAATTGCAATGTTGATGTTGAACAGAGTGATGATGATAATGAGGATGATTATGAAGATGAAGATGAAGATGAAGATGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCCAATAG

Protein sequence

MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDEDDFRQRVEEFIEKVNRGWREERLRTFGRVQ

Homology

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BLAST of CsGy5G005360 vs. NCBI nr
Match: XP_024947996.1 (uncharacterized protein LOC112495610 [Citrus sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-07
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS +E   +A S+++FIFCF NLII++I   S+  +SSFDQ+++++   LSI  ++ +
Sbjct: 1   MLDSAVEWITEAASNSIFIFCFCNLIIVMILMGSK-YSSSFDQESEEHAPVLSINSYAYS 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  E  S+   D         E  N+ +       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ-------XXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 RQRVEEFIEKVNRGWREERLRTFGRV 147
               EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of CsGy5G005360 vs. NCBI nr
Match: XP_021909393.1 (uncharacterized protein LOC110823339 [Carica papaya])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS LEL   A S++LF+FCFFNLII++I   SRP +     Q  +  +P+ +      
Sbjct: 1   MFDSTLELITQAASNSLFVFCFFNLIIVIILAGSRPGSDV--HQQTETLLPIGVY----R 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  +Q +   ++ +  + +VIE  +E E   N                            
Sbjct: 61  NADDQKTNFNRNSV--LVDVIEPVDEGEG--NISDRSEDRDVEDDKIDEDDSGEGEEDAL 120

Query: 121 RQRVEEFIEKVNRGWREERLRT 143
           R+R+EEFI KVN+ W+ E LRT
Sbjct: 121 RRRIEEFIAKVNKEWKAEMLRT 132

[Close]

BLAST of CsGy5G005360 vs. NCBI nr
Match: GAY41344.1 (hypothetical protein CUMW_058730 [Citrus unshiu])

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   +A S+++FIFCF NLII++I   S+  +S FDQ+++++   LSI  ++  
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPALSINSYAYG 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  E  S+   D         E  N+ +       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ-------XXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 RQRVEEFIEKVNRGWREERLRTFGRV 147
               EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of CsGy5G005360 vs. NCBI nr
Match: XP_018815821.1 (PREDICTED: uncharacterized protein LOC108987375 [Juglans regia])

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+LEL + A S++LFIFCF NLII+ +      ++ + D+   ++++P+S++I++ T
Sbjct: 1   MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSSPNLDK---EDEIPVSVIINTST 60

Query: 61  NTTEQNSMLQ----KDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXX 120
           +  +     Q    K+  +   E+  S  E     +                        
Sbjct: 61  HQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVAD----KEEKGNSDHDNKDVDKDSED 120

Query: 121 XXXXRQRVEEFIEKVNRGWREE 139
               R+RVEEFIEKVN+GW+EE
Sbjct: 121 HDELRRRVEEFIEKVNKGWKEE 135

[Close]

BLAST of CsGy5G005360 vs. NCBI nr
Match: XP_024927868.1 (oxidant-induced cell-cycle arrest protein 5-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 72/142 (50.70%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS LEL + A S++L +FCF NLII++I    +P +++  Q N+ N  P         
Sbjct: 1   MLDSTLELISQAASNSLLVFCFCNLIIVIILVGLKPVSTAHQQVNNRNSNPRG--GGEAA 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETE--RCVNFXXXXXXXXXXXXXXXXXXXXXXXXX 120
               +NSM++ D I GV E   +Q   E       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  PKQVKNSMVKNDLIEGVLEESNAQKAAEDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXRQRVEEFIEKVNRGWREERL 141
           X R++VEEFIEKVN GW+ E L
Sbjct: 121 XLRKKVEEFIEKVNEGWKAEVL 140

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BLAST of CsGy5G005360 vs. TrEMBL
Match: tr|A0A2H5NME2|A0A2H5NME2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058730 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   +A S+++FIFCF NLII++I   S+  +S FDQ+++++   LSI  ++  
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPALSINSYAYG 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  E  S+   D         E  N+ +       XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ-------XXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 RQRVEEFIEKVNRGWREERLRTFGRV 147
               EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of CsGy5G005360 vs. TrEMBL
Match: tr|A0A2I4E8V2|A0A2I4E8V2_9ROSI (uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+LEL + A S++LFIFCF NLII+ +      ++ + D+   ++++P+S++I++ T
Sbjct: 1   MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSSPNLDK---EDEIPVSVIINTST 60

Query: 61  NTTEQNSMLQ----KDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXX 120
           +  +     Q    K+  +   E+  S  E     +                        
Sbjct: 61  HQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVAD----KEEKGNSDHDNKDVDKDSED 120

Query: 121 XXXXRQRVEEFIEKVNRGWREE 139
               R+RVEEFIEKVN+GW+EE
Sbjct: 121 HDELRRRVEEFIEKVNKGWKEE 135

[Close]

BLAST of CsGy5G005360 vs. TrEMBL
Match: tr|V4RLB9|V4RLB9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006184mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   +A S+++FIFCF NLII++I   S+  +S FDQ+++++   LSI   + +
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  E  S+   D         E   + +        XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSTDLQE-------XXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 RQRVEEFIEKVNRGWREERLRTFGRV 147
               EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of CsGy5G005360 vs. TrEMBL
Match: tr|A0A067FDA5|A0A067FDA5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042832mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   +A S+++FIFCF NLII++I   S+  +S FDQ+++++   LSI   + +
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  NTTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           N  E  S+   D         E   + +        XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSTDLQE-------XXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 RQRVEEFIEKVNRGWREERLRTFGRV 147
               EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of CsGy5G005360 vs. TrEMBL
Match: tr|A0A2N9GM45|A0A2N9GM45_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 1   MADSILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+LEL   A S++LFIFCF NLII ++   S+ ++S F QQ    ++PLS+VI++ T
Sbjct: 1   MFDSMLELITQAASNSLFIFCFCNLIIAILLVASK-SSSDFGQQ---GEIPLSVVINTST 60

Query: 61  N---TTEQNSMLQKDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXX 120
           N    T    +   + ++   + +   +E               XXXXXXXXXXXXXXXX
Sbjct: 61  NHKHVTNGKQVFFYNKMLRNFDEVSYSHEA---------PVADKXXXXXXXXXXXXXXXX 120

Query: 121 XXXRQRVEEFIEKVNRGWREERLRT 143
           XXX    EEFIEKVN+GW+ E LR+
Sbjct: 121 XXXXXXXEEFIEKVNKGWKAELLRS 132

The following BLAST results are available for this feature:

BLAST of CsGy5G005360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024947996.1	3.9e-07	50.68	uncharacterized protein LOC112495610 [Citrus sinensis]	[more]
XP_021909393.1	1.9e-06	32.39	uncharacterized protein LOC110823339 [Carica papaya]	[more]
GAY41344.1	4.3e-06	49.32	hypothetical protein CUMW_058730 [Citrus unshiu]	[more]
XP_018815821.1	7.4e-06	30.28	PREDICTED: uncharacterized protein LOC108987375 [Juglans regia]	[more]
XP_024927868.1	7.4e-06	50.70	oxidant-induced cell-cycle arrest protein 5-like isoform X2 [Ziziphus jujuba]	[more]

BLAST of CsGy5G005360 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G005360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G005360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H5NME2\|A0A2H5NME2_CITUN	2.9e-06	49.32	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058730 PE=4 SV=1	[more]
tr\|A0A2I4E8V2\|A0A2I4E8V2_9ROSI	4.9e-06	30.28	uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 P...	[more]
tr\|V4RLB9\|V4RLB9_9ROSI	1.9e-05	47.95	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006184mg PE=4 ...	[more]
tr\|A0A067FDA5\|A0A067FDA5_CITSI	1.9e-05	47.95	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042832mg PE=4 SV=1	[more]
tr\|A0A2N9GM45\|A0A2N9GM45_FAGSY	1.6e-04	44.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G005360.1	CsGy5G005360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..120
None	No IPR available	PANTHER	PTHR36595	FAMILY NOT NAMED	coord: 1..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G005360	Cla003575	Watermelon (97103) v1	cgybwmB388
CsGy5G005360	MELO3C005418	Melon (DHL92) v3.5.1	cgybmeB301
CsGy5G005360	ClCG01G005110	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G005360	CmaCh02G010080	Cucurbita maxima (Rimu)	cgybcmaB636
CsGy5G005360	CmoCh02G010230	Cucurbita moschata (Rifu)	cgybcmoB614
CsGy5G005360	Lsi09G005400	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G005360	MELO3C005418.2	Melon (DHL92) v3.6.1	cgybmedB301
CsGy5G005360	Cla97C01G005340	Watermelon (97103) v2	cgybwmbB319
CsGy5G005360	Bhi12G000508	Wax gourd	cgybwgoB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G005360	Cucurbita maxima (Rimu)	cgybcmaB601
CsGy5G005360	Cucurbita moschata (Rifu)	cgybcmoB573
CsGy5G005360	Cucurbita pepo (Zucchini)	cgybcpeB608
CsGy5G005360	Cucurbita pepo (Zucchini)	cgybcpeB692
CsGy5G005360	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G005360	Bottle gourd (USVL1VR-Ls)	cgyblsiB346
CsGy5G005360	Melon (DHL92) v3.5.1	cgybmeB350
CsGy5G005360	Watermelon (97103) v1	cgybwmB376
CsGy5G005360	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G005360	Silver-seed gourd	carcgybB0711
CsGy5G005360	Silver-seed gourd	carcgybB1018
CsGy5G005360	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G005360	Wax gourd	cgybwgoB419