ClCG01G005110 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G005110
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 5414306 .. 5414728 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAATGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGGATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGAAGCATGAAGTTCAACTTCAATGATAATGTTGAACAGAGTGATGATGATCAGGATGAGGATGAGGATGAGGATGAAGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

mRNA sequence

ATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAATGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGGATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGAAGCATGAAGTTCAACTTCAATGATAATGTTGAACAGAGTGATGATGATCAGGATGAGGATGAGGATGAGGATGAAGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

Coding sequence (CDS)

ATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAATGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGGATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGAAGCATGAAGTTCAACTTCAATGATAATGTTGAACAGAGTGATGATGATCAGGATGAGGATGAGGATGAGGATGAAGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG

Protein sequence

MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE

Homology

[Close]

BLAST of ClCG01G005110 vs. TrEMBL
Match: B9I4K0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14360g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 53/136 (38.97%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           +E+  +A S++L IFCF NLII++IL  SKPVS+   F Q+++  +P S+V  ++T   E
Sbjct: 6   VELIVQAASNSLVIFCFCNLIIVMILMGSKPVSN---FGQESE--IPQSMVTKTHTKVKE 65

Query: 61  QNFML-----QKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDDQDEDEDEDEDDFRR 120
               +      K P++D  +++        +++    D+ E+ ++  D +EDEDED+ RR
Sbjct: 66  DVLAMPSLDENKKPSLDEDKMSTDDGRVSITLEEPTGDDDEE-ENGNDNEEDEDEDELRR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFI KVN GWR E
Sbjct: 126 RVEEFINKVNHGWRAE 135

[Close]

BLAST of ClCG01G005110 vs. TrEMBL
Match: A0A0B2QSL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ++   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +PLS   +       
Sbjct: 6   LDFITQAASSSAFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPLSKGENQKQEAKY 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFNDNVEQSDDDQDEDED-EDEDDFRR 120
              +++K+ T  + +  E+ ++ E     S++   ND+    ++D D+D +  DED+ +R
Sbjct: 66  SKSLVEKE-TASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDELKR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFIEKVN+GW+EE
Sbjct: 126 RVEEFIEKVNKGWKEE 135

[Close]

BLAST of ClCG01G005110 vs. TrEMBL
Match: I1L3K6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G153700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           +E   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +P S    +     +
Sbjct: 6   LEFITQAASSSTFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPPSKGDENEKQKAK 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFND--------NVEQSDDDQD---ED 120
            +  L +  T  + +  E+ ++ E     S+    ND         VE+ DDD D   +D
Sbjct: 66  YSNSLVEKETASLPQAVEVSHDQEAETVESIGIEGNDYCNNEDEEKVEEEDDDDDNNDDD 125

Query: 121 EDEDEDDFRRRVEEFIEKVNRGWREE 132
           +D DED+ +RRVEEFIEKVN+GW+EE
Sbjct: 126 DDNDEDELKRRVEEFIEKVNKGWKEE 146

[Close]

BLAST of ClCG01G005110 vs. TrEMBL
Match: A0A0B2QXP3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ++   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +PLS   +       
Sbjct: 6   LDFITQAASSSAFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPLSKGENQKQEAKY 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFNDNVEQSDDDQDEDED-EDEDDFRR 120
              +++K+ T  + +  E+ ++ E     S++   ND+    ++D D+D +  DED+ +R
Sbjct: 66  SKSLVEKE-TASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDELKR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFIEKVN+GW+EE
Sbjct: 126 RVEEFIEKVNKGWKEE 135

[Close]

BLAST of ClCG01G005110 vs. TrEMBL
Match: K7MIR2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-14
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ++   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +PLS   +       
Sbjct: 6   LDFITQAASSSAFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPLSKGENQKQEAKY 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFNDNVEQSDDDQDEDED-EDEDDFRR 120
              +++K+ T  + +  E+ ++ E     S++   ND+    ++D D+D +  DED+ +R
Sbjct: 66  SKSLVEKE-TASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDELKR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFIEKVN+GW+EE
Sbjct: 126 RVEEFIEKVNKGWKEE 135

[Close]

BLAST of ClCG01G005110 vs. NCBI nr
Match: gi|731423133|ref|XP_010662379.1| (PREDICTED: histone acetyltransferase GCN5-like [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 53/135 (39.26%), Postives = 80/135 (59.26%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ME+  +A S++LFIFCF NLII I+L  S   SS S  DQ +   +P S+V + + +  E
Sbjct: 6   MELITQATSNSLFIFCFCNLIIAILLIGSLKPSSYS--DQGSA--IPFSVVTNVDKSDKE 65

Query: 61  ----QNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDDQDEDEDEDEDDFRRR 120
               ++   +    +D  EV++     E+ +  + N   +  D  Q+E+E+ED+D+ RRR
Sbjct: 66  TANAEDLFKESRVLMDASEVSDA----EKGVVVDDNKEDDSEDSSQEEEEEEDDDELRRR 125

Query: 121 VEEFIEKVNRGWREE 132
            EEFIEK+NRGWR E
Sbjct: 126 AEEFIEKINRGWRAE 132

[Close]

BLAST of ClCG01G005110 vs. NCBI nr
Match: gi|224122576|ref|XP_002318871.1| (hypothetical protein POPTR_0012s14360g [Populus trichocarpa])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 53/136 (38.97%), Postives = 83/136 (61.03%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           +E+  +A S++L IFCF NLII++IL  SKPVS+   F Q+++  +P S+V  ++T   E
Sbjct: 6   VELIVQAASNSLVIFCFCNLIIVMILMGSKPVSN---FGQESE--IPQSMVTKTHTKVKE 65

Query: 61  QNFML-----QKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDDQDEDEDEDEDDFRR 120
               +      K P++D  +++        +++    D+ E+ ++  D +EDEDED+ RR
Sbjct: 66  DVLAMPSLDENKKPSLDEDKMSTDDGRVSITLEEPTGDDDEE-ENGNDNEEDEDEDELRR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFI KVN GWR E
Sbjct: 126 RVEEFINKVNHGWRAE 135

[Close]

BLAST of ClCG01G005110 vs. NCBI nr
Match: gi|356530951|ref|XP_003534042.1| (PREDICTED: nucleolin-like [Glycine max])

HSP 1 Score: 85.9 bits (211), Expect = 6.2e-14
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           +E   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +P S    +     +
Sbjct: 6   LEFITQAASSSTFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPPSKGDENEKQKAK 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFND--------NVEQSDDDQD---ED 120
            +  L +  T  + +  E+ ++ E     S+    ND         VE+ DDD D   +D
Sbjct: 66  YSNSLVEKETASLPQAVEVSHDQEAETVESIGIEGNDYCNNEDEEKVEEEDDDDDNNDDD 125

Query: 121 EDEDEDDFRRRVEEFIEKVNRGWREE 132
           +D DED+ +RRVEEFIEKVN+GW+EE
Sbjct: 126 DDNDEDELKRRVEEFIEKVNKGWKEE 146

[Close]

BLAST of ClCG01G005110 vs. NCBI nr
Match: gi|955374398|ref|XP_014624015.1| (PREDICTED: uncharacterized protein LOC102660518 [Glycine max])

HSP 1 Score: 85.9 bits (211), Expect = 6.2e-14
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ++   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +PLS   +       
Sbjct: 6   LDFITQAASSSAFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPLSKGENQKQEAKY 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFNDNVEQSDDDQDEDED-EDEDDFRR 120
              +++K+ T  + +  E+ ++ E     S++   ND+    ++D D+D +  DED+ +R
Sbjct: 66  SKSLVEKE-TASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDELKR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFIEKVN+GW+EE
Sbjct: 126 RVEEFIEKVNKGWKEE 135

[Close]

BLAST of ClCG01G005110 vs. NCBI nr
Match: gi|734384932|gb|KHN24417.1| (hypothetical protein glysoja_014021 [Glycine soja])

HSP 1 Score: 85.9 bits (211), Expect = 6.2e-14
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 1   MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTE 60
           ++   +A SS+ FIFCF NLII+IIL   KP   S S  Q+++  +PLS   +       
Sbjct: 6   LDFITQAASSSAFIFCFCNLIIVIILVDLKP---SLSIHQESE--IPLSKGENQKQEAKY 65

Query: 61  QNFMLQKDPTVDVCEVTEIQNEPE----RSMKFNFNDNVEQSDDDQDEDED-EDEDDFRR 120
              +++K+ T  + +  E+ ++ E     S++   ND+    ++D D+D +  DED+ +R
Sbjct: 66  SKSLVEKE-TASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDELKR 125

Query: 121 RVEEFIEKVNRGWREE 132
           RVEEFIEKVN+GW+EE
Sbjct: 126 RVEEFIEKVNKGWKEE 135

The following BLAST results are available for this feature:

BLAST of ClCG01G005110 vs. TrEMBL


Match Name	E-value	Identity	Description
B9I4K0_POPTR	1.1e-14	38.97	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14360g PE=4 SV=1	[more]
A0A0B2QSL2_GLYSO	4.3e-14	37.50	Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1	[more]
I1L3K6_SOYBN	4.3e-14	38.36	Uncharacterized protein OS=Glycine max GN=GLYMA_09G153700 PE=4 SV=1	[more]
A0A0B2QXP3_GLYSO	4.3e-14	37.50	Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1	[more]
K7MIR2_SOYBN	4.3e-14	37.50	Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1	[more]

BLAST of ClCG01G005110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|731423133\|ref\|XP_010662379.1\|	1.6e-14	39.26	PREDICTED: histone acetyltransferase GCN5-like [Vitis vinifera]	[more]
gi\|224122576\|ref\|XP_002318871.1\|	1.6e-14	38.97	hypothetical protein POPTR_0012s14360g [Populus trichocarpa]	[more]
gi\|356530951\|ref\|XP_003534042.1\|	6.2e-14	38.36	PREDICTED: nucleolin-like [Glycine max]	[more]
gi\|955374398\|ref\|XP_014624015.1\|	6.2e-14	37.50	PREDICTED: uncharacterized protein LOC102660518 [Glycine max]	[more]
gi\|734384932\|gb\|KHN24417.1\|	6.2e-14	37.50	hypothetical protein glysoja_014021 [Glycine soja]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G005110.1	ClCG01G005110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G005110	MELO3C005418	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G005110	Cla003575	Watermelon (97103) v1	wcgwmB154
ClCG01G005110	Cla97C01G005340	Watermelon (97103) v2	wcgwmbB089
ClCG01G005110	Bhi12G000508	Wax gourd	wcgwgoB193
ClCG01G005110	CmaCh02G010080	Cucurbita maxima (Rimu)	cmawcgB519
ClCG01G005110	CmoCh02G010230	Cucurbita moschata (Rifu)	cmowcgB517
ClCG01G005110	Lsi09G005400	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G005110	CsGy5G005360	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G005110	MELO3C005418.2	Melon (DHL92) v3.6.1	medwcgB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G005110	Silver-seed gourd	carwcgB0688
ClCG01G005110	Silver-seed gourd	carwcgB1008
ClCG01G005110	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G005110	Cucumber (Gy14) v1	cgywcgB211
ClCG01G005110	Cucumber (Gy14) v1	cgywcgB447
ClCG01G005110	Cucurbita maxima (Rimu)	cmawcgB256
ClCG01G005110	Cucurbita moschata (Rifu)	cmowcgB244
ClCG01G005110	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G005110	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G005110	Cucurbita pepo (Zucchini)	cpewcgB168
ClCG01G005110	Cucurbita pepo (Zucchini)	cpewcgB640
ClCG01G005110	Bottle gourd (USVL1VR-Ls)	lsiwcgB328