CmoCh02G010230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G010230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr02 : 6221218 .. 6221631 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCGTTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCATAGTGGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACGTCGAGGACGTCGAGGACGAGGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAATGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

mRNA sequence

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCGTTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCATAGTGGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACGTCGAGGACGTCGAGGACGAGGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAATGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

Coding sequence (CDS)

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCGTTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCATAGTGGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACGTCGAGGACGTCGAGGACGAGGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAATGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

Homology

[Close]

BLAST of CmoCh02G010230 vs. TrEMBL
Match: A0A0B2QSL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD------DHEDVEDVEDEEDF 120
           A+ +  L +     +    E  ++ +     S  +EG+ D      D +D  ++ DE++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNNGWREERQRTSRLV 137
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmoCh02G010230 vs. TrEMBL
Match: K7MIR2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD------DHEDVEDVEDEEDF 120
           A+ +  L +     +    E  ++ +     S  +EG+ D      D +D  ++ DE++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNNGWREERQRTSRLV 137
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmoCh02G010230 vs. TrEMBL
Match: A0A0B2QXP3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD------DHEDVEDVEDEEDF 120
           A+ +  L +     +    E  ++ +     S  +EG+ D      D +D  ++ DE++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNNGWREERQRTSRL 136
           KRRVEEFIEKVN GW+EE   TS L
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNL 142

[Close]

BLAST of CmoCh02G010230 vs. TrEMBL
Match: V7BDI5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G111700g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS++E   +AASS  FIFC  NLII+I+L   +P  S +  Q  +++PLS++ +    
Sbjct: 1   MLDSLMEYITQAASSYAFIFCFCNLIIVIILVDLKPKLSFN--QGSEEIPLSLITNKGIE 60

Query: 61  AEQN-FMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDVEDVEDEEDFKRRVEEFIE 120
           A ++  ++ K+ +         + E    D VE  G D+ +    E++++ +RRVEEFIE
Sbjct: 61  AAKSKCLVSKSTLTPQAREVAHVKEEVVVDRVEMEGKDNCNCNSTEEDDELRRRVEEFIE 120

Query: 121 KVNNGWREERQRTSRLV 137
           +VN GW+ E   +S L+
Sbjct: 121 RVNEGWKAEHFNSSSLL 135

[Close]

BLAST of CmoCh02G010230 vs. TrEMBL
Match: K7LK29_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS++E   +AASS  FIFC  NLII+I+L   +P  S    Q  + + LS+  ++   
Sbjct: 28  MLDSVIEYITQAASSYAFIFCFCNLIIVIILVDLKPKLSFD--QESEQIRLSMPTNTGIE 87

Query: 61  -AEQNFMLQKNAIVDVCA-VTETLNEPDFSDSVEGSGDDHEDVEDVEDEEDFKRRVEEFI 120
            A    ++ KN        V++   E    D V   G+D+ D    ED+++ KRRVEEFI
Sbjct: 88  GAISKSLVNKNTFSPQAREVSQHAKEEVVVDKVGSEGNDNCDCNSEEDDDELKRRVEEFI 147

Query: 121 EKVNNGWREERQRTSRLV 137
           E+VN GW+ E   TS L+
Sbjct: 148 ERVNEGWKAEHLSTSSLL 163

[Close]

BLAST of CmoCh02G010230 vs. NCBI nr
Match: gi|955374398|ref|XP_014624015.1| (PREDICTED: uncharacterized protein LOC102660518 [Glycine max])

HSP 1 Score: 75.5 bits (184), Expect = 8.2e-11
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD------DHEDVEDVEDEEDF 120
           A+ +  L +     +    E  ++ +     S  +EG+ D      D +D  ++ DE++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNNGWREERQRTSRLV 137
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmoCh02G010230 vs. NCBI nr
Match: gi|734384932|gb|KHN24417.1| (hypothetical protein glysoja_014021 [Glycine soja])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+I+L   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNAIVDVCAVTETLNEPDF----SDSVEGSGD------DHEDVEDVEDEEDF 120
           A+ +  L +     +    E  ++ +     S  +EG+ D      D +D  ++ DE++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNNGWREERQRTSRL 136
           KRRVEEFIEKVN GW+EE   TS L
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNL 142

[Close]

BLAST of CmoCh02G010230 vs. NCBI nr
Match: gi|593686458|ref|XP_007143900.1| (hypothetical protein PHAVU_007G111700g [Phaseolus vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS++E   +AASS  FIFC  NLII+I+L   +P  S +  Q  +++PLS++ +    
Sbjct: 1   MLDSLMEYITQAASSYAFIFCFCNLIIVIILVDLKPKLSFN--QGSEEIPLSLITNKGIE 60

Query: 61  AEQN-FMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDVEDVEDEEDFKRRVEEFIE 120
           A ++  ++ K+ +         + E    D VE  G D+ +    E++++ +RRVEEFIE
Sbjct: 61  AAKSKCLVSKSTLTPQAREVAHVKEEVVVDRVEMEGKDNCNCNSTEEDDELRRRVEEFIE 120

Query: 121 KVNNGWREERQRTSRLV 137
           +VN GW+ E   +S L+
Sbjct: 121 RVNEGWKAEHFNSSSLL 135

[Close]

BLAST of CmoCh02G010230 vs. NCBI nr
Match: gi|224122576|ref|XP_002318871.1| (hypothetical protein POPTR_0012s14360g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M +S +EL  +AAS++L IFC  NLII+++L  S+PV   S+     ++P S+V  ++T 
Sbjct: 1   MFESTVELIVQAASNSLVIFCFCNLIIVMILMGSKPV---SNFGQESEIPQSMVTKTHTK 60

Query: 61  AEQNFML-------------QKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDVEDVEDE 120
            +++ +              +     D   V+ TL EP   D  E +G+D+E  ED EDE
Sbjct: 61  VKEDVLAMPSLDENKKPSLDEDKMSTDDGRVSITLEEPTGDDDEEENGNDNE--ED-EDE 120

Query: 121 EDFKRRVEEFIEKVNNGWREERQR 132
           ++ +RRVEEFI KVN+GWR E  R
Sbjct: 121 DELRRRVEEFINKVNHGWRAELSR 138

[Close]

BLAST of CmoCh02G010230 vs. NCBI nr
Match: gi|224134541|ref|XP_002321848.1| (hypothetical protein POPTR_0015s14360g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIVLFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M +S LEL  +AAS++  IFC  NLII+++L  S+PVF+    +   ++P S+VI+++T 
Sbjct: 1   MFESTLELITQAASNSFVIFCFCNLIIVMILMGSKPVFNFDQER---EIPRSMVINTHTK 60

Query: 61  AEQNFMLQKNAI------VDVCAVTETLNEPDFSDSVEGSGDDHEDVEDVEDEEDFKRRV 120
            +++ + + +++      +D   V+ T  EP    + +G  DD ED    ED+E  +RR 
Sbjct: 61  VKEDILAKPSSLDGNEISIDDRNVSITQEEP----TGDGDEDDGEDGYGDEDDE-LRRRS 120

Query: 121 EEFIEKVNNGWREERQR 132
           EEFI K+N+GWR E  R
Sbjct: 121 EEFINKINHGWRTESSR 129

The following BLAST results are available for this feature:

BLAST of CmoCh02G010230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G010230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B2QSL2_GLYSO	5.7e-11	39.04	Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1	[more]
K7MIR2_SOYBN	5.7e-11	39.04	Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1	[more]
A0A0B2QXP3_GLYSO	2.2e-10	38.62	Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1	[more]
V7BDI5_PHAVU	2.2e-10	35.04	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G111700g PE=4 SV=1	[more]
K7LK29_SOYBN	3.1e-09	37.68	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmoCh02G010230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G010230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|955374398\|ref\|XP_014624015.1\|	8.2e-11	39.04	PREDICTED: uncharacterized protein LOC102660518 [Glycine max]	[more]
gi\|734384932\|gb\|KHN24417.1\|	3.1e-10	38.62	hypothetical protein glysoja_014021 [Glycine soja]	[more]
gi\|593686458\|ref\|XP_007143900.1\|	3.1e-10	35.04	hypothetical protein PHAVU_007G111700g [Phaseolus vulgaris]	[more]
gi\|224122576\|ref\|XP_002318871.1\|	5.3e-10	38.19	hypothetical protein POPTR_0012s14360g [Populus trichocarpa]	[more]
gi\|224134541\|ref\|XP_002321848.1\|	1.5e-09	37.23	hypothetical protein POPTR_0015s14360g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010230.1	CmoCh02G010230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G010230	CmaCh02G010080	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G010230	Cla003575	Watermelon (97103) v1	cmowmB569
CmoCh02G010230	MELO3C005418	Melon (DHL92) v3.5.1	cmomeB520
CmoCh02G010230	ClCG01G005110	Watermelon (Charleston Gray)	cmowcgB517
CmoCh02G010230	MELO3C005418.2	Melon (DHL92) v3.6.1	cmomedB597
CmoCh02G010230	Cla97C01G005340	Watermelon (97103) v2	cmowmbB576
CmoCh02G010230	Bhi12G000508	Wax gourd	cmowgoB0706
CmoCh02G010230	CsGy5G005360	Cucumber (Gy14) v2	cgybcmoB614

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G010230	Silver-seed gourd	carcmoB0971
CmoCh02G010230	Silver-seed gourd	carcmoB1389
CmoCh02G010230	Cucumber (Chinese Long) v3	cmocucB0697
CmoCh02G010230	Cucumber (Chinese Long) v3	cmocucB0719
CmoCh02G010230	Watermelon (97103) v2	cmowmbB621
CmoCh02G010230	Wax gourd	cmowgoB0707
CmoCh02G010230	Cucurbita moschata (Rifu)	cmocmoB247
CmoCh02G010230	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh02G010230	Cucurbita moschata (Rifu)	cmocmoB426
CmoCh02G010230	Cucumber (Gy14) v1	cgycmoB0345
CmoCh02G010230	Cucurbita maxima (Rimu)	cmacmoB295
CmoCh02G010230	Cucurbita maxima (Rimu)	cmacmoB416
CmoCh02G010230	Wild cucumber (PI 183967)	cmocpiB589
CmoCh02G010230	Wild cucumber (PI 183967)	cmocpiB607
CmoCh02G010230	Cucumber (Chinese Long) v2	cmocuB583
CmoCh02G010230	Cucumber (Chinese Long) v2	cmocuB599
CmoCh02G010230	Melon (DHL92) v3.5.1	cmomeB567
CmoCh02G010230	Watermelon (Charleston Gray)	cmowcgB557
CmoCh02G010230	Watermelon (97103) v1	cmowmB558
CmoCh02G010230	Cucurbita pepo (Zucchini)	cmocpeB546
CmoCh02G010230	Cucurbita pepo (Zucchini)	cmocpeB552
CmoCh02G010230	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G010230	Bottle gourd (USVL1VR-Ls)	cmolsiB517
CmoCh02G010230	Bottle gourd (USVL1VR-Ls)	cmolsiB570
CmoCh02G010230	Cucumber (Gy14) v2	cgybcmoB365
CmoCh02G010230	Melon (DHL92) v3.6.1	cmomedB649