CmaCh02G010080 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G010080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 5989665 .. 5990090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCATTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCACAGTTGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACAAGGATGAGGAAGAGGACGAGGACGAGGACGATGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAGTGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

mRNA sequence

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCATTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCACAGTTGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACAAGGATGAGGAAGAGGACGAGGACGAGGACGATGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAGTGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

Coding sequence (CDS)

ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCATTCTCTTCACCTCAAGACCAGTCTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCACAGTTGATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACAAGGATGAGGAAGAGGACGAGGACGAGGACGATGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAGTGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG

Protein sequence

MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSVEGSGDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLVE

Homology

[Close]

BLAST of CmaCh02G010080 vs. TrEMBL
Match: K7MIR2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDHEDKDEEEDEDE----DDEDF 120
           A+ +  L +  T  +    E  +  E +  +S+E  G+D    +EE+D+D+    D+++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRLV 141
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmaCh02G010080 vs. TrEMBL
Match: A0A0B2QSL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDHEDKDEEEDEDE----DDEDF 120
           A+ +  L +  T  +    E  +  E +  +S+E  G+D    +EE+D+D+    D+++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRLV 141
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmaCh02G010080 vs. TrEMBL
Match: A0A0B2QXP3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDHEDKDEEEDEDE----DDEDF 120
           A+ +  L +  T  +    E  +  E +  +S+E  G+D    +EE+D+D+    D+++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRL 140
           KRRVEEFIEKVN GW+EE   TS L
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNL 142

[Close]

BLAST of CmaCh02G010080 vs. TrEMBL
Match: B9I4K0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14360g PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M +S +EL  +AAS++L IFC  NLII++IL  S+PV   S+     ++P S+V  ++T 
Sbjct: 1   MFESTVELIVQAASNSLVIFCFCNLIIVMILMGSKPV---SNFGQESEIPQSMVTKTHTK 60

Query: 61  AEQNFML-------------QKNATVDVCAVTETLNEPDFSDSVEGSGDDHEDKDEEEDE 120
            +++ +              +   + D   V+ TL EP   D  E +G+D+E       E
Sbjct: 61  VKEDVLAMPSLDENKKPSLDEDKMSTDDGRVSITLEEPTGDDDEEENGNDNE-------E 120

Query: 121 DEDDEDFKRRVEEFIEKVNSGWREERQR 136
           DED+++ +RRVEEFI KVN GWR E  R
Sbjct: 121 DEDEDELRRRVEEFINKVNHGWRAELSR 138

[Close]

BLAST of CmaCh02G010080 vs. TrEMBL
Match: A0A151S418_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016365 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 63/159 (39.62%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+LE   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLEFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGANQKQG 60

Query: 61  AEQNFMLQKNAT-----VDVCAVTETLNEPDFSDSVEGSGD---DHEDK----------- 120
           +    +++K+ T     V+V    E   E D S  +EG+ D   + E+K           
Sbjct: 61  SNSKPLVEKDTTSLPQEVEVSHDQEA--EADESIEIEGNDDCSNEEEEKVEGGDKVNNNY 120

Query: 121 DEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV 141
           D+++D +++D++ KRRVEEFIEKVN GW+EE   TS +V
Sbjct: 121 DDDDDNNDNDDELKRRVEEFIEKVNKGWKEELLSTSSMV 154

[Close]

BLAST of CmaCh02G010080 vs. NCBI nr
Match: gi|955374398|ref|XP_014624015.1| (PREDICTED: uncharacterized protein LOC102660518 [Glycine max])

HSP 1 Score: 75.5 bits (184), Expect = 8.4e-11
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDHEDKDEEEDEDE----DDEDF 120
           A+ +  L +  T  +    E  +  E +  +S+E  G+D    +EE+D+D+    D+++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRLV 141
           KRRVEEFIEKVN GW+EE   TS LV
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNLV 143

[Close]

BLAST of CmaCh02G010080 vs. NCBI nr
Match: gi|734384932|gb|KHN24417.1| (hypothetical protein glysoja_014021 [Glycine soja])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGENQKQE 60

Query: 61  AEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDHEDKDEEEDEDE----DDEDF 120
           A+ +  L +  T  +    E  +  E +  +S+E  G+D    +EE+D+D+    D+++ 
Sbjct: 61  AKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRL 140
           KRRVEEFIEKVN GW+EE   TS L
Sbjct: 121 KRRVEEFIEKVNKGWKEELLSTSNL 142

[Close]

BLAST of CmaCh02G010080 vs. NCBI nr
Match: gi|224122576|ref|XP_002318871.1| (hypothetical protein POPTR_0012s14360g [Populus trichocarpa])

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M +S +EL  +AAS++L IFC  NLII++IL  S+PV   S+     ++P S+V  ++T 
Sbjct: 1   MFESTVELIVQAASNSLVIFCFCNLIIVMILMGSKPV---SNFGQESEIPQSMVTKTHTK 60

Query: 61  AEQNFML-------------QKNATVDVCAVTETLNEPDFSDSVEGSGDDHEDKDEEEDE 120
            +++ +              +   + D   V+ TL EP   D  E +G+D+E       E
Sbjct: 61  VKEDVLAMPSLDENKKPSLDEDKMSTDDGRVSITLEEPTGDDDEEENGNDNE-------E 120

Query: 121 DEDDEDFKRRVEEFIEKVNSGWREERQR 136
           DED+++ +RRVEEFI KVN GWR E  R
Sbjct: 121 DEDEDELRRRVEEFINKVNHGWRAELSR 138

[Close]

BLAST of CmaCh02G010080 vs. NCBI nr
Match: gi|1012338224|gb|KYP49481.1| (hypothetical protein KK1_028762 [Cajanus cajan])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 63/159 (39.62%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTN 60
           M DS+LE   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    
Sbjct: 1   MLDSVLEFITQAASSSAFIFCFCNLIIVIILVDLKP--SLSIHQE-SEIPLSKGANQKQG 60

Query: 61  AEQNFMLQKNAT-----VDVCAVTETLNEPDFSDSVEGSGD---DHEDK----------- 120
           +    +++K+ T     V+V    E   E D S  +EG+ D   + E+K           
Sbjct: 61  SNSKPLVEKDTTSLPQEVEVSHDQEA--EADESIEIEGNDDCSNEEEEKVEGGDKVNNNY 120

Query: 121 DEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV 141
           D+++D +++D++ KRRVEEFIEKVN GW+EE   TS +V
Sbjct: 121 DDDDDNNDNDDELKRRVEEFIEKVNKGWKEELLSTSSMV 154

[Close]

BLAST of CmaCh02G010080 vs. NCBI nr
Match: gi|731423133|ref|XP_010662379.1| (PREDICTED: histone acetyltransferase GCN5-like [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 58/145 (40.00%), Postives = 81/145 (55.86%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIH---- 60
           M D+ +EL  +A S++LFIFC  NLII I+L  S    S SD  +   +P S+V +    
Sbjct: 1   MFDTTMELITQATSNSLFIFCFCNLIIAILLIGSLKPSSYSDQGSA--IPFSVVTNVDKS 60

Query: 61  --SNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSVEGSGDDHEDKDEEEDEDEDDEDF 120
                NAE  F  +    +D   V++        D+ E   DD ED  +EE+E+EDD++ 
Sbjct: 61  DKETANAEDLFK-ESRVLMDASEVSDAEKGVVVDDNKE---DDSEDSSQEEEEEEDDDEL 120

Query: 121 KRRVEEFIEKVNSGWREERQRTSRL 140
           +RR EEFIEK+N GWR E  RT+ L
Sbjct: 121 RRRAEEFIEKINRGWRAEMLRTASL 139

The following BLAST results are available for this feature:

BLAST of CmaCh02G010080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G010080 vs. TrEMBL


Match Name	E-value	Identity	Description
K7MIR2_SOYBN	5.9e-11	41.78	Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1	[more]
A0A0B2QSL2_GLYSO	5.9e-11	41.78	Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1	[more]
A0A0B2QXP3_GLYSO	2.2e-10	41.38	Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1	[more]
B9I4K0_POPTR	6.5e-10	37.16	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14360g PE=4 SV=1	[more]
A0A151S418_CAJCA	1.1e-09	39.62	Uncharacterized protein OS=Cajanus cajan GN=KK1_016365 PE=4 SV=1	[more]

BLAST of CmaCh02G010080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G010080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|955374398\|ref\|XP_014624015.1\|	8.4e-11	41.78	PREDICTED: uncharacterized protein LOC102660518 [Glycine max]	[more]
gi\|734384932\|gb\|KHN24417.1\|	3.2e-10	41.38	hypothetical protein glysoja_014021 [Glycine soja]	[more]
gi\|224122576\|ref\|XP_002318871.1\|	9.3e-10	37.16	hypothetical protein POPTR_0012s14360g [Populus trichocarpa]	[more]
gi\|1012338224\|gb\|KYP49481.1\|	1.6e-09	39.62	hypothetical protein KK1_028762 [Cajanus cajan]	[more]
gi\|731423133\|ref\|XP_010662379.1\|	2.1e-09	40.00	PREDICTED: histone acetyltransferase GCN5-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010080.1	CmaCh02G010080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36595	FAMILY NOT NAMED	coord: 2..140 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G010080	Cla003575	Watermelon (97103) v1	cmawmB575
CmaCh02G010080	MELO3C005418	Melon (DHL92) v3.5.1	cmameB531
CmaCh02G010080	ClCG01G005110	Watermelon (Charleston Gray)	cmawcgB519
CmaCh02G010080	CmoCh02G010230	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G010080	Lsi09G005400	Bottle gourd (USVL1VR-Ls)	cmalsiB531
CmaCh02G010080	MELO3C005418.2	Melon (DHL92) v3.6.1	cmamedB610
CmaCh02G010080	Cla97C01G005340	Watermelon (97103) v2	cmawmbB601
CmaCh02G010080	Bhi12G000508	Wax gourd	cmawgoB0713
CmaCh02G010080	CsGy5G005360	Cucumber (Gy14) v2	cgybcmaB636

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G010080	Cucumber (Chinese Long) v3	cmacucB0711
CmaCh02G010080	Cucumber (Chinese Long) v3	cmacucB0731
CmaCh02G010080	Watermelon (97103) v2	cmawmbB649
CmaCh02G010080	Wax gourd	cmawgoB0714
CmaCh02G010080	Cucurbita maxima (Rimu)	cmacmaB309
CmaCh02G010080	Cucurbita maxima (Rimu)	cmacmaB396
CmaCh02G010080	Cucurbita maxima (Rimu)	cmacmaB495
CmaCh02G010080	Cucumber (Gy14) v1	cgycmaB0351
CmaCh02G010080	Cucurbita moschata (Rifu)	cmacmoB580
CmaCh02G010080	Cucurbita moschata (Rifu)	cmacmoB591
CmaCh02G010080	Wild cucumber (PI 183967)	cmacpiB601
CmaCh02G010080	Wild cucumber (PI 183967)	cmacpiB615
CmaCh02G010080	Cucumber (Chinese Long) v2	cmacuB596
CmaCh02G010080	Cucumber (Chinese Long) v2	cmacuB609
CmaCh02G010080	Melon (DHL92) v3.5.1	cmameB579
CmaCh02G010080	Watermelon (Charleston Gray)	cmawcgB559
CmaCh02G010080	Watermelon (97103) v1	cmawmB564
CmaCh02G010080	Cucurbita pepo (Zucchini)	cmacpeB603
CmaCh02G010080	Cucurbita pepo (Zucchini)	cmacpeB639
CmaCh02G010080	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G010080	Cucumber (Gy14) v2	cgybcmaB394
CmaCh02G010080	Melon (DHL92) v3.6.1	cmamedB661
CmaCh02G010080	Silver-seed gourd	carcmaB0999
CmaCh02G010080	Silver-seed gourd	carcmaB1434