MELO3C005418.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005418.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Translation initiation factor IF-2, putative
Location	chr09 : 21426312 .. 21426752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

mRNA sequence

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

Coding sequence (CDS)

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

Protein sequence

MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDYENEDEDEDFRQRVEEFIEKVNRGWREERLRTFGRVE

Homology

[Close]

BLAST of MELO3C005418.2 vs. NCBI nr
Match: XP_024947996.1 (uncharacterized protein LOC112495610 [Citrus sinensis])

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 76/145 (52.41%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS +E   EAAS+++FIFCF NLII++IL  S+  +SSFDQ+++++   LSI  ++ +
Sbjct: 1   MLDSAVEWITEAASNSIFIFCFCNLIIVMILMGSK-YSSSFDQESEEHAPVLSINSYAYS 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         E  N+ +      XXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ------XXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. NCBI nr
Match: XP_024927868.1 (oxidant-induced cell-cycle arrest protein 5-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 74/142 (52.11%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS LEL ++AAS++L +FCF NLII++IL   +PV+++  Q N+ N  P         
Sbjct: 1   MLDSTLELISQAASNSLLVFCFCNLIIVIILVGLKPVSTAHQQVNNRNSNPRG--GGEAA 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETE---RCVNFXXXXXXXXXXXXXXXXXXXXXXXX 120
               +N M++ND I GV E   +Q   E        XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  PKQVKNSMVKNDLIEGVLEESNAQKAAEDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXRQRVEEFIEKVNRGWREERL 140
           X R++VEEFIEKVN GW+ E L
Sbjct: 121 XLRKKVEEFIEKVNEGWKAEVL 140

[Close]

BLAST of MELO3C005418.2 vs. NCBI nr
Match: XP_021909393.1 (uncharacterized protein LOC110823339 [Carica papaya])

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS LEL  +AAS++LF+FCFFNLII++IL  SRP   S   Q  +  +P+ +  ++  
Sbjct: 1   MFDSTLELITQAASNSLFVFCFFNLIIVIILAGSRP--GSDVHQQTETLLPIGVYRNADD 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
             T  N   +N  +V   +VIE  +E E  ++                           R
Sbjct: 61  QKTNFN---RNSVLV---DVIEPVDEGEGNIS-DRSEDRDVEDDKIDEDDSGEGEEDALR 120

Query: 121 QRVEEFIEKVNRGWREERLRT 142
           +R+EEFI KVN+ W+ E LRT
Sbjct: 121 RRIEEFIAKVNKEWKAEMLRT 132

[Close]

BLAST of MELO3C005418.2 vs. NCBI nr
Match: GAY41344.1 (hypothetical protein CUMW_058730 [Citrus unshiu])

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI  ++  
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPALSINSYAYG 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         E  N+ +      XXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ------XXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. NCBI nr
Match: XP_006421753.1 (uncharacterized protein LOC18031911 [Citrus clementina] >ESR34993.1 hypothetical protein CICLE_v10006184mg [Citrus clementina] >KDO65389.1 hypothetical protein CISIN_1g042832mg [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 73/145 (50.34%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI   + +
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         +S    E   +   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNK------KSMAARELSTDLQEXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. TrEMBL
Match: tr|A0A2H5NME2|A0A2H5NME2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI  ++  
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPALSINSYAYG 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         E  N+ +      XXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSNDLQ------XXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. TrEMBL
Match: tr|V4RLB9|V4RLB9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006184mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.8e-07
Identity = 73/145 (50.34%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI   + +
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         +S    E   +   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNK------KSMAARELSTDLQEXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. TrEMBL
Match: tr|A0A067FDA5|A0A067FDA5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042832mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.8e-07
Identity = 73/145 (50.34%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI   + +
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXXXXXR 120
           N  E   +   D         +S    E   +   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  NKQETISIHSFDGNK------KSMAARELSTDLQEXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 QRVEEFIEKVNRGWREERLRTFGRV 146
              EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 XXFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418.2 vs. TrEMBL
Match: tr|A0A2N9GM45|A0A2N9GM45_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 68/145 (46.90%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+LEL  +AAS++LFIFCF NLII ++L  S+  +S F QQ    ++PLS+VI++ T
Sbjct: 1   MFDSMLELITQAASNSLFIFCFCNLIIAILLVASKS-SSDFGQQ---GEIPLSVVINTST 60

Query: 61  N----TTEQNLMLQNDPIVGVCEVIESQNETERCVNFXXXXXXXXXXXXXXXXXXXXXXX 120
           N    T  + +   N  +         +N  E   +        XXXXXXXXXXXXXXXX
Sbjct: 61  NHKHVTNGKQVFFYNKML---------RNFDEVSYSHEAPVADKXXXXXXXXXXXXXXXX 120

Query: 121 XXXRQRVEEFIEKVNRGWREERLRT 142
           XXX    EEFIEKVN+GW+ E LR+
Sbjct: 121 XXXXXXXEEFIEKVNKGWKAELLRS 132

[Close]

BLAST of MELO3C005418.2 vs. TrEMBL
Match: tr|A0A2I4E8V2|A0A2I4E8V2_9ROSI (uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+LEL + AAS++LFIFCF NLII+ ++      + + D+   ++++P+S++I++  
Sbjct: 1   MFDSMLELISRAASNSLFIFCFCNLIIIAVILVGSKSSPNLDK---EDEIPVSVIINT-- 60

Query: 61  NTTEQNLMLQNDPIVGVCEVIESQNE----TERCVNFXXXXXXXXXXXXXXXXXXXXXXX 120
            +T Q    +++ +    E+  + NE     +                            
Sbjct: 61  -STHQKQGRKSEQLFDGKELSLNANELSYSLQEAAPVADKEEKGNSDHDNKDVDKDSEDH 120

Query: 121 XXXRQRVEEFIEKVNRGWREE 138
              R+RVEEFIEKVN+GW+EE
Sbjct: 121 DELRRRVEEFIEKVNKGWKEE 135

The following BLAST results are available for this feature:

BLAST of MELO3C005418.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024947996.1	6.0e-08	52.41	uncharacterized protein LOC112495610 [Citrus sinensis]	[more]
XP_024927868.1	1.7e-07	52.11	oxidant-induced cell-cycle arrest protein 5-like isoform X2 [Ziziphus jujuba]	[more]
XP_021909393.1	6.6e-07	35.46	uncharacterized protein LOC110823339 [Carica papaya]	[more]
GAY41344.1	6.6e-07	51.03	hypothetical protein CUMW_058730 [Citrus unshiu]	[more]
XP_006421753.1	1.5e-06	50.34	uncharacterized protein LOC18031911 [Citrus clementina] >ESR34993.1 hypothetical...	[more]

BLAST of MELO3C005418.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C005418.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C005418.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H5NME2\|A0A2H5NME2_CITUN	4.4e-07	51.03	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058730 PE=4 SV=1	[more]
tr\|V4RLB9\|V4RLB9_9ROSI	9.8e-07	50.34	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006184mg PE=4 ...	[more]
tr\|A0A067FDA5\|A0A067FDA5_CITSI	9.8e-07	50.34	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042832mg PE=4 SV=1	[more]
tr\|A0A2N9GM45\|A0A2N9GM45_FAGSY	2.2e-06	46.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1	[more]
tr\|A0A2I4E8V2\|A0A2I4E8V2_9ROSI	2.2e-06	30.50	uncharacterized protein LOC108987375 OS=Juglans regia OX=51240 GN=LOC108987375 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005418.2.1	MELO3C005418.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..120
None	No IPR available	PANTHER	PTHR36595	FAMILY NOT NAMED	coord: 1..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005418.2	CmaCh02G010080	Cucurbita maxima (Rimu)	cmamedB610
MELO3C005418.2	CmoCh02G010230	Cucurbita moschata (Rifu)	cmomedB597
MELO3C005418.2	Lsi09G005400	Bottle gourd (USVL1VR-Ls)	lsimedB013
MELO3C005418.2	CsGy5G005360	Cucumber (Gy14) v2	cgybmedB301
MELO3C005418.2	Cla003575	Watermelon (97103) v1	medwmB022
MELO3C005418.2	ClCG01G005110	Watermelon (Charleston Gray)	medwcgB017
MELO3C005418.2	Cla97C01G005340	Watermelon (97103) v2	medwmbB007
MELO3C005418.2	Bhi12G000508	Wax gourd	medwgoB014

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005418.2	Cucumber (Gy14) v1	cgymedB204
MELO3C005418.2	Cucurbita maxima (Rimu)	cmamedB291
MELO3C005418.2	Cucurbita moschata (Rifu)	cmomedB277
MELO3C005418.2	Cucurbita pepo (Zucchini)	cpemedB174
MELO3C005418.2	Cucurbita pepo (Zucchini)	cpemedB775
MELO3C005418.2	Wild cucumber (PI 183967)	cpimedB341
MELO3C005418.2	Cucumber (Chinese Long) v2	cumedB339
MELO3C005418.2	Bottle gourd (USVL1VR-Ls)	lsimedB356
MELO3C005418.2	Watermelon (97103) v1	medwmB021
MELO3C005418.2	Silver-seed gourd	carmedB0718
MELO3C005418.2	Silver-seed gourd	carmedB1014
MELO3C005418.2	Cucumber (Chinese Long) v3	cucmedB352