MELO3C005418 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005418
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Beta-tubulin folding cofactor D
Location	chr9 : 20290985 .. 20291425 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

mRNA sequence

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

Coding sequence (CDS)

ATGGCTGATTCCATTCTAGAACTTGCTGCTGAGGCAGCTTCAAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCGTGATTTTGTTCACCTCAAGACCAGTCACCTCCAGTTTTGATCAACAAAATGATGATAATGATATGCCACTTTCAATTGTCATTCATAGCAAAACAAACACAACAGAGCAAAATTTAATGCTTCAGAATGATCCCATAGTTGGTGTGTGTGAAGTGATAGAGAGCCAAAATGAAACAGAAAGATGCGTAAATTTCAATTGCAATGCTGATGTTGAACAGAGTGATGATGATAACGAGGACGATTATGAAAATGAAGATGAAGATGAAGATTTCAGACAAAGAGTGGAAGAATTTATTGAAAAGGTCAACAGAGGGTGGAGAGAAGAAAGGCTAAGAACCTTTGGACGAGTCGAATAG

Protein sequence

MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDYENEDEDEDFRQRVEEFIEKVNRGWREERLRTFGRVE*

Homology

[Close]

BLAST of MELO3C005418 vs. TrEMBL
Match: V4RLB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006184mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSI---VIH 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI      
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  SKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
           +K  T   +    N   +   E+     E         +AD +Q ++ N ++ E++D+D+
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSTDLQEE--------HAD-DQEEERNFENSESKDDDD 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRTFGRV 146
           + R+R EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 ELRRRFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418 vs. TrEMBL
Match: A0A067FDA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042832mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSI---VIH 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI      
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  SKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
           +K  T   +    N   +   E+     E         +AD +Q ++ N ++ E++D+D+
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSTDLQEE--------HAD-DQEEERNFENSESKDDDD 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRTFGRV 146
           + R+R EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 ELRRRFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418 vs. TrEMBL
Match: A0A0B2QXP3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+L+   +AASS+ FIFCF NLII++IL   +P  S     + ++++PLS   + K 
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKPSLSI----HQESEIPLSKGENQKQ 60

Query: 61  NTTEQNLMLQNDP--IVGVCEVIESQN-ETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
                  +++ +   +    EV   Q  ET   +    N D    ++D++DD    DEDE
Sbjct: 61  EAKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDE 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRT 142
             ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 -LKRRVEEFIEKVNKGWKEELLST 139

[Close]

BLAST of MELO3C005418 vs. TrEMBL
Match: A0A0B2QSL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+L+   +AASS+ FIFCF NLII++IL   +P  S     + ++++PLS   + K 
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKPSLSI----HQESEIPLSKGENQKQ 60

Query: 61  NTTEQNLMLQNDP--IVGVCEVIESQN-ETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
                  +++ +   +    EV   Q  ET   +    N D    ++D++DD    DEDE
Sbjct: 61  EAKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDE 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRT 142
             ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 -LKRRVEEFIEKVNKGWKEELLST 139

[Close]

BLAST of MELO3C005418 vs. TrEMBL
Match: K7MIR2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+L+   +AASS+ FIFCF NLII++IL   +P  S     + ++++PLS   + K 
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKPSLSI----HQESEIPLSKGENQKQ 60

Query: 61  NTTEQNLMLQNDP--IVGVCEVIESQN-ETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
                  +++ +   +    EV   Q  ET   +    N D    ++D++DD    DEDE
Sbjct: 61  EAKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDE 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRT 142
             ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 -LKRRVEEFIEKVNKGWKEELLST 139

[Close]

BLAST of MELO3C005418 vs. NCBI nr
Match: gi|567858140|ref|XP_006421753.1| (hypothetical protein CICLE_v10006184mg [Citrus clementina])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSI---VIH 60
           M DS ++   EAAS+++FIFCF NLII++IL  S+  +S FDQ+++++   LSI      
Sbjct: 1   MLDSAVDWITEAASNSIFIFCFCNLIIVMILMGSK-YSSGFDQESEEHAPVLSINSCAYS 60

Query: 61  SKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
           +K  T   +    N   +   E+     E         +AD +Q ++ N ++ E++D+D+
Sbjct: 61  NKQETISIHSFDGNKKSMAARELSTDLQEE--------HAD-DQEEERNFENSESKDDDD 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRTFGRV 146
           + R+R EEFIEKVNRGW+EE+LRT+G V
Sbjct: 121 ELRRRFEEFIEKVNRGWKEEKLRTYGLV 138

[Close]

BLAST of MELO3C005418 vs. NCBI nr
Match: gi|734384932|gb|KHN24417.1| (hypothetical protein glysoja_014021 [Glycine soja])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+L+   +AASS+ FIFCF NLII++IL   +P  S     + ++++PLS   + K 
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKPSLSI----HQESEIPLSKGENQKQ 60

Query: 61  NTTEQNLMLQNDP--IVGVCEVIESQN-ETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
                  +++ +   +    EV   Q  ET   +    N D    ++D++DD    DEDE
Sbjct: 61  EAKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDE 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRT 142
             ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 -LKRRVEEFIEKVNKGWKEELLST 139

[Close]

BLAST of MELO3C005418 vs. NCBI nr
Match: gi|955374398|ref|XP_014624015.1| (PREDICTED: uncharacterized protein LOC102660518 [Glycine max])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQQNDDNDMPLSIVIHSKT 60
           M DS+L+   +AASS+ FIFCF NLII++IL   +P  S     + ++++PLS   + K 
Sbjct: 1   MLDSVLDFITQAASSSAFIFCFCNLIIVIILVDLKPSLSI----HQESEIPLSKGENQKQ 60

Query: 61  NTTEQNLMLQNDP--IVGVCEVIESQN-ETERCVNFNCNADVEQSDDDNEDDYENEDEDE 120
                  +++ +   +    EV   Q  ET   +    N D    ++D++DD    DEDE
Sbjct: 61  EAKYSKSLVEKETASLPQAVEVSHDQEAETVESIEIEGNDDCSNEEEDDDDDNNINDEDE 120

Query: 121 DFRQRVEEFIEKVNRGWREERLRT 142
             ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 -LKRRVEEFIEKVNKGWKEELLST 139

[Close]

BLAST of MELO3C005418 vs. NCBI nr
Match: gi|1012338224|gb|KYP49481.1| (hypothetical protein KK1_028762 [Cajanus cajan])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 59/159 (37.11%), Postives = 84/159 (52.83%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRP-----------VTSSFDQQNDDND 60
           M DS+LE   +AASS+ FIFCF NLII++IL   +P           ++   +Q+   N 
Sbjct: 1   MLDSVLEFITQAASSSAFIFCFCNLIIVIILVDLKPSLSIHQESEIPLSKGANQKQGSNS 60

Query: 61  MPLSIVIHSKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDN--- 120
            PL   +   T +  Q + + +D      E IE +   + C N      VE  D  N   
Sbjct: 61  KPL---VEKDTTSLPQEVEVSHDQEAEADESIEIEGNDD-CSNEE-EEKVEGGDKVNNNY 120

Query: 121 EDDYENEDEDEDFRQRVEEFIEKVNRGWREERLRTFGRV 146
           +DD +N D D++ ++RVEEFIEKVN+GW+EE L T   V
Sbjct: 121 DDDDDNNDNDDELKRRVEEFIEKVNKGWKEELLSTSSMV 154

[Close]

BLAST of MELO3C005418 vs. NCBI nr
Match: gi|734392924|gb|KHN27852.1| (hypothetical protein glysoja_033000 [Glycine soja])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1


Query: 1   MADSILELAAEAASSTLFIFCFFNLIILVILFTSRPVTSSFDQ------QNDDNDMPLS- 60
           M DS+LE   +AASS+ FIFCF NLII++IL   +P  S   +      + D+N+   + 
Sbjct: 1   MLDSVLEFITQAASSSTFIFCFCNLIIVIILVDLKPSLSIHQESEIPPSKGDENEKQRAK 60

Query: 61  ---IVIHSKTNTTEQNLMLQNDPIVGVCEVIESQNETERCVNFNCNADVEQSDDDNEDDY 120
               ++  +T +  Q + + +D      E I  +       N  CN + E+  ++ +DD 
Sbjct: 61  YSNSLVEKETASLPQAVEVSHDQEAETVESIGIEG------NDYCNNEDEEKVEEEDDDE 120

Query: 121 ENEDEDEDFRQRVEEFIEKVNRGWREERLRT 142
           +N DEDE  ++RVEEFIEKVN+GW+EE L T
Sbjct: 121 DNNDEDE-LKRRVEEFIEKVNKGWKEELLST 144

The following BLAST results are available for this feature:

BLAST of MELO3C005418 vs. TrEMBL


Match Name	E-value	Identity	Description
V4RLB9_9ROSI	7.4e-17	39.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006184mg PE=4 SV=1	[more]
A0A067FDA5_CITSI	7.4e-17	39.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042832mg PE=4 SV=1	[more]
A0A0B2QXP3_GLYSO	8.2e-16	38.19	Uncharacterized protein OS=Glycine soja GN=glysoja_014021 PE=4 SV=1	[more]
A0A0B2QSL2_GLYSO	8.2e-16	38.19	Uncharacterized protein OS=Glycine soja GN=glysoja_014024 PE=4 SV=1	[more]
K7MIR2_SOYBN	8.2e-16	38.19	Uncharacterized protein OS=Glycine max GN=GLYMA_16G204500 PE=4 SV=1	[more]

BLAST of MELO3C005418 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567858140\|ref\|XP_006421753.1\|	1.1e-16	39.19	hypothetical protein CICLE_v10006184mg [Citrus clementina]	[more]
gi\|734384932\|gb\|KHN24417.1\|	1.2e-15	38.19	hypothetical protein glysoja_014021 [Glycine soja]	[more]
gi\|955374398\|ref\|XP_014624015.1\|	1.2e-15	38.19	PREDICTED: uncharacterized protein LOC102660518 [Glycine max]	[more]
gi\|1012338224\|gb\|KYP49481.1\|	1.5e-15	37.11	hypothetical protein KK1_028762 [Cajanus cajan]	[more]
gi\|734392924\|gb\|KHN27852.1\|	1.5e-15	37.09	hypothetical protein glysoja_033000 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005418T1	MELO3C005418T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36595	FAMILY NOT NAMED	coord: 2..145 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005418	Cla003575	Watermelon (97103) v1	mewmB024
MELO3C005418	ClCG01G005110	Watermelon (Charleston Gray)	mewcgB019
MELO3C005418	Cla97C01G005340	Watermelon (97103) v2	mewmbB009
MELO3C005418	Bhi12G000508	Wax gourd	mewgoB016
MELO3C005418	CmaCh02G010080	Cucurbita maxima (Rimu)	cmameB531
MELO3C005418	CmoCh02G010230	Cucurbita moschata (Rifu)	cmomeB520
MELO3C005418	Lsi09G005400	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005418	CsGy5G005360	Cucumber (Gy14) v2	cgybmeB301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005418	Cucumber (Gy14) v1	cgymeB207
MELO3C005418	Cucurbita maxima (Rimu)	cmameB256
MELO3C005418	Cucurbita moschata (Rifu)	cmomeB244
MELO3C005418	Wild cucumber (PI 183967)	cpimeB351
MELO3C005418	Cucumber (Chinese Long) v2	cumeB359
MELO3C005418	Cucurbita pepo (Zucchini)	cpemeB147
MELO3C005418	Cucurbita pepo (Zucchini)	cpemeB648
MELO3C005418	Silver-seed gourd	carmeB0705
MELO3C005418	Silver-seed gourd	carmeB1002
MELO3C005418	Cucumber (Chinese Long) v3	cucmeB360