CsGy3G033410 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G033410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein MKS1-like
Location	Chr3 : 32415751 .. 32416089 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATAACCTCCGCCACCGCAAGGAATCATTCGCAATTGCGAGGGCCAAGGCCACCGCCATTGACGGTTAACAAATCCAGCTCCACTAACATTTCCAAGAAATCAACGAAGAATAATCCTCTTCCGATTTCGAATCAACGCCATCGCCGTTCTCCGATAATCATTTACCTTCGATCCCCAAAGGTCATCCATGTTCGGCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAATCGATCCTCTGTAGCCGTCGTCGCCTCATCCTGTTCTGCTACTGGAATGATTAATGATGAGGAATTTGTATCCGTGTGCAATTGCATTCCGTCGTAG

mRNA sequence

ATGATGATAACCTCCGCCACCGCAAGGAATCATTCGCAATTGCGAGGGCCAAGGCCACCGCCATTGACGGTTAACAAATCCAGCTCCACTAACATTTCCAAGAAATCAACGAAGAATAATCCTCTTCCGATTTCGAATCAACGCCATCGCCGTTCTCCGATAATCATTTACCTTCGATCCCCAAAGGTCATCCATGTTCGGCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAATCGATCCTCTGTAGCCGTCGTCGCCTCATCCTGTTCTGCTACTGGAATGATTAATGATGAGGAATTTGTATCCGTGTGCAATTGCATTCCGTCGTAG

Coding sequence (CDS)

ATGATGATAACCTCCGCCACCGCAAGGAATCATTCGCAATTGCGAGGGCCAAGGCCACCGCCATTGACGGTTAACAAATCCAGCTCCACTAACATTTCCAAGAAATCAACGAAGAATAATCCTCTTCCGATTTCGAATCAACGCCATCGCCGTTCTCCGATAATCATTTACCTTCGATCCCCAAAGGTCATCCATGTTCGGCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAATCGATCCTCTGTAGCCGTCGTCGCCTCATCCTGTTCTGCTACTGGAATGATTAATGATGAGGAATTTGTATCCGTGTGCAATTGCATTCCGTCGTAG

Protein sequence

MMITSATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS

Homology

[Close]

BLAST of CsGy3G033410 vs. NCBI nr
Match: KGN59247.1 (hypothetical protein Csa_3G785410 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.6e-53
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MMITSATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS 60
           MMITSA ARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS
Sbjct: 1   MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS 60

Query: 61  PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS 113
           PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS
Sbjct: 61  PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS 112

[Close]

BLAST of CsGy3G033410 vs. NCBI nr
Match: XP_008443599.1 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 65/108 (60.19%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 8   ARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVR 67
           ARN SQLRGPRPPPLTVNK SSTNI K                                 
Sbjct: 6   ARNQSQLRGPRPPPLTVNK-SSTNIFK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXX 65

Query: 68  PEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 113
           PEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D   EEF S CNCIPS
Sbjct: 66  PEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CsGy3G033410 vs. NCBI nr
Match: OMO95035.1 (VQ motif-containing protein [Corchorus capsularis])

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 6  ATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNN-PLPISNQRHRRSPIIIYLRSPKVI 65
          +++R   +L+GPRP PL V+ +SS  I K ST ++   P +N+     P++IYLRSPK+I
Sbjct: 2  SSSRRIRELQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKII 61

Query: 66 HVRPEEFKSFVQRLTGNRSSVAVVAS 91
          HVRPEEF S VQRLTG  S+ A  +S
Sbjct: 62 HVRPEEFMSLVQRLTGKDSTTATTSS 87

[Close]

BLAST of CsGy3G033410 vs. NCBI nr
Match: XP_011468538.1 (PREDICTED: uncharacterized protein LOC105352670 [Fragaria vesca subsp. vesca])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 4   TSATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKV 63
           T+  AR H+QL+GPRP  LTV+K+S   ++KK  K NP          SP+I+YL SP++
Sbjct: 15  TNCIARPHTQLQGPRPAALTVSKNSKKMMAKKK-KQNP----------SPVIVYLISPRI 74

Query: 64  IHVRPEEFKSFVQRLTGNRSS------VAVVASSCSAT 96
           IHV+PEEF + VQRLTGN  S      +   + SCSA+
Sbjct: 75  IHVQPEEFMALVQRLTGNHESSRRVNNIVANSQSCSAS 101

[Close]

BLAST of CsGy3G033410 vs. NCBI nr
Match: XP_010653237.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 13 QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFK 72
          Q++GPRP PLTVN+S ST+         P+P   +  RRSP+I+YLRSP +IHV+P++F 
Sbjct: 8  QMQGPRPTPLTVNRSCSTS---SEMIKKPVP---KNRRRSPVIVYLRSPTIIHVKPQDFM 67

Query: 73 SFVQRLTGNRSSVAVVASSCSAT 96
            VQ LTGN+SS  +V S CS++
Sbjct: 68 RLVQSLTGNKSS--MVPSFCSSS 82

[Close]

BLAST of CsGy3G033410 vs. TAIR10
Match: AT1G68450.1 (VQ motif-containing protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 12 SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEF 71
          +++ G RP  L +   S T     S K+ P P      R SP+IIY  SPKVIH R E+F
Sbjct: 7  NEINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDF 66

Query: 72 KSFVQRLTG 81
           + VQRLTG
Sbjct: 67 MALVQRLTG 71

[Close]

BLAST of CsGy3G033410 vs. TAIR10
Match: AT3G18690.1 (MAP kinase substrate 1)

HSP 1 Score: 44.3 bits (103), Expect = 5.8e-05
Identity = 29/75 (38.67%), Postives = 36/75 (48.00%), Query Frame = 0


Query: 13 QLRGPRPPPLTVNKSSS--TNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEE 72
          Q+ GPRP PL+V+K S       K                  P++IY  SPKV+H    E
Sbjct: 23 QICGPRPSPLSVHKDSHKIKKPPKHPAXXXXXXXXXXXXXXXPVVIYAVSPKVVHATASE 82

Query: 73 FKSFVQRLTGNRSSV 86
          F + VQRLTG  S V
Sbjct: 83 FMNVVQRLTGISSGV 97

[Close]

BLAST of CsGy3G033410 vs. TAIR10
Match: AT3G18360.1 (VQ motif-containing protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.2e-04
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 22  LTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEFKSFVQRLTG 81
           L VNK S  ++ KK    +P   S+    R P+IIY  +P++IH  P++F + VQ+LTG
Sbjct: 46  LKVNKDS--HVIKKPP--SPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CsGy3G033410 vs. Swiss-Prot
Match: sp|Q9CA36|VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-06
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 12 SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRPEEF 71
          +++ G RP  L +   S T     S K+ P P      R SP+IIY  SPKVIH R E+F
Sbjct: 7  NEINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDF 66

Query: 72 KSFVQRLTG 81
           + VQRLTG
Sbjct: 67 MALVQRLTG 71

[Close]

BLAST of CsGy3G033410 vs. TrEMBL
Match: tr|A0A0A0LEW5|A0A0A0LEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MMITSATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS 60
           MMITSA ARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS
Sbjct: 1   MMITSAAARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRS 60

Query: 61  PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS 113
           PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS
Sbjct: 61  PKVIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMINDEEFVSVCNCIPS 112

[Close]

BLAST of CsGy3G033410 vs. TrEMBL
Match: tr|A0A1S3B975|A0A1S3B975_CUCME (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 65/108 (60.19%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 8   ARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVR 67
           ARN SQLRGPRPPPLTVNK SSTNI K                                 
Sbjct: 6   ARNQSQLRGPRPPPLTVNK-SSTNIFK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXX 65

Query: 68  PEEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 113
           PEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D   EEF S CNCIPS
Sbjct: 66  PEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CsGy3G033410 vs. TrEMBL
Match: tr|A0A2N9GB07|A0A2N9GB07_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 5  SATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVI 64
          S T + + QL+GPRP PLTVNKSS+        K  PLP    R R SP+IIYL+SPKVI
Sbjct: 3  SQTRKKYLQLQGPRPAPLTVNKSST------KIKKQPLP---NRTRSSPVIIYLQSPKVI 62

Query: 65 HVRPEEFKSFVQRLTGNRSSVAVVASSCS 94
          HVRPEEF   VQ+LTGN++   V A S S
Sbjct: 63 HVRPEEFMGIVQQLTGNQAPSRVAADSSS 82

[Close]

BLAST of CsGy3G033410 vs. TrEMBL
Match: tr|A0A1R3JJT0|A0A1R3JJT0_COCAP (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 6  ATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNN-PLPISNQRHRRSPIIIYLRSPKVI 65
          +++R   +L+GPRP PL V+ +SS  I K ST ++   P +N+     P++IYLRSPK+I
Sbjct: 2  SSSRRIRELQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKII 61

Query: 66 HVRPEEFKSFVQRLTGNRSSVAVVAS 91
          HVRPEEF S VQRLTG  S+ A  +S
Sbjct: 62 HVRPEEFMSLVQRLTGKDSTTATTSS 87

[Close]

BLAST of CsGy3G033410 vs. TrEMBL
Match: tr|A0A1R3HED5|A0A1R3HED5_9ROSI (VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 6   ATARNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRR--SPIIIYLRSPKV 65
           +++R   +L+GPRP PL V+ +SS  I K ST ++  P  N R +    P++IYLRSPK+
Sbjct: 2   SSSRGIRELQGPRPTPLKVSNTSSKIIKKSSTTSHQAP-KNIRSKNIIDPVVIYLRSPKI 61

Query: 66  IHVRPEEFKSFVQRLTGNRSSVAVVA---------SSCSATG-MINDEEFVSV 107
           IHVRPEEF S VQRLTG  S+ A            SS S++G ++ DE    +
Sbjct: 62  IHVRPEEFMSLVQRLTGKDSTTATTTDHIHQISYPSSPSSSGDVVADESMADI 113

The following BLAST results are available for this feature:

BLAST of CsGy3G033410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59247.1	3.6e-53	99.11	hypothetical protein Csa_3G785410 [Cucumis sativus]	[more]
XP_008443599.1	3.8e-18	60.19	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
OMO95035.1	2.6e-11	50.00	VQ motif-containing protein [Corchorus capsularis]	[more]
XP_011468538.1	4.5e-11	46.94	PREDICTED: uncharacterized protein LOC105352670 [Fragaria vesca subsp. vesca]	[more]
XP_010653237.1	1.7e-10	50.60	PREDICTED: VQ motif-containing protein 8, chloroplastic [Vitis vinifera]	[more]

BLAST of CsGy3G033410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68450.1	2.8e-07	44.93	VQ motif-containing protein	[more]
AT3G18690.1	5.8e-05	38.67	MAP kinase substrate 1	[more]
AT3G18360.1	2.2e-04	40.68	VQ motif-containing protein	[more]

BLAST of CsGy3G033410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CA36\|VQ8_ARATH	5.0e-06	44.93	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CsGy3G033410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEW5\|A0A0A0LEW5_CUCSA	2.4e-53	99.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1	[more]
tr\|A0A1S3B975\|A0A1S3B975_CUCME	2.5e-18	60.19	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1	[more]
tr\|A0A2N9GB07\|A0A2N9GB07_FAGSY	1.1e-13	56.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1	[more]
tr\|A0A1R3JJT0\|A0A1R3JJT0_COCAP	1.7e-11	50.00	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 P...	[more]
tr\|A0A1R3HED5\|A0A1R3HED5_9ROSI	1.1e-10	43.36	VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G033410.1	CsGy3G033410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 60..83 e-value: 3.0E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..47
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 8..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G033410	Cla017590	Watermelon (97103) v1	cgybwmB187
CsGy3G033410	Csa3G785410	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G033410	MELO3C009575	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G033410	ClCG10G017960	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G033410	CSPI03G35970	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G033410	CmaCh06G005530	Cucurbita maxima (Rimu)	cgybcmaB428
CsGy3G033410	CmoCh06G005570	Cucurbita moschata (Rifu)	cgybcmoB402
CsGy3G033410	Lsi03G017850	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G033410	Cp4.1LG08g09380	Cucurbita pepo (Zucchini)	cgybcpeB455
CsGy3G033410	MELO3C009575.2	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G033410	CsaV3_3G038330	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G033410	Cla97C10G200920	Watermelon (97103) v2	cgybwmbB178
CsGy3G033410	Bhi11G002064	Wax gourd	cgybwgoB213
CsGy3G033410	Carg16243	Silver-seed gourd	carcgybB0676

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G033410	Cucurbita maxima (Rimu)	cgybcmaB306
CsGy3G033410	Cucurbita moschata (Rifu)	cgybcmoB279
CsGy3G033410	Cucurbita pepo (Zucchini)	cgybcpeB395
CsGy3G033410	Silver-seed gourd	carcgybB0263