Cla97C10G200920 (gene) Watermelon (97103) v2

NameCla97C10G200920
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein MKS1-like
LocationCla97Chr10 : 30982060 .. 30982386 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

mRNA sequence

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

Coding sequence (CDS)

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

Protein sequence

MMRNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS
BLAST of Cla97C10G200920 vs. NCBI nr
Match: KGN59247.1 (hypothetical protein Csa_3G785410 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 4.6e-37
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0

Query: 3   RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

BLAST of Cla97C10G200920 vs. NCBI nr
Match: XP_008443599.1 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 64/106 (60.38%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFK                                 PE
Sbjct: 7   RNQSQLRGPRPPPLTVNKSSTNIFK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXPE 66

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 67  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

BLAST of Cla97C10G200920 vs. NCBI nr
Match: OMO95035.1 (VQ motif-containing protein [Corchorus capsularis])

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEF 66
          +L+GPRP PL V+ +S+KI KKS+  + L  P  NR     PV+IYLRSPKIIHVRPEEF
Sbjct: 9  ELQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKIIHVRPEEF 68

Query: 67 KSFVQRLTGNRSSVAVVTS 84
           S VQRLTG  S+ A  +S
Sbjct: 69 MSLVQRLTGKDSTTATTSS 87

BLAST of Cla97C10G200920 vs. NCBI nr
Match: OMO68664.1 (VQ motif-containing protein [Corchorus olitorius])

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRR--SPVIIYLRSPKIIHVRPEEF 66
          +L+GPRP PL V+ +S+KI KKS+  +     N R +    PV+IYLRSPKIIHVRPEEF
Sbjct: 9  ELQGPRPTPLKVSNTSSKIIKKSSTTSHQAPKNIRSKNIIDPVVIYLRSPKIIHVRPEEF 68

Query: 67 KSFVQRLTGNRSSVAVVT 83
           S VQRLTG  S+ A  T
Sbjct: 69 MSLVQRLTGKDSTTATTT 86

BLAST of Cla97C10G200920 vs. NCBI nr
Match: XP_018851271.1 (PREDICTED: protein MKS1-like [Juglans regia])

HSP 1 Score: 80.1 bits (196), Expect = 5.1e-12
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKS 66
          QL GPRP PLTV+KSS KI K        P P+R+  RSPVI YL+SPK+IHVRPEEF  
Sbjct: 17 QLHGPRPAPLTVSKSSIKIRK--------PFPSRKS-RSPVITYLQSPKVIHVRPEEFMC 76

Query: 67 FVQRLTGNR--SSVAVVTSSCSTTELI 92
           VQRLTGN+  S  A  + S S+T  +
Sbjct: 77 TVQRLTGNQAPSDAAASSHSYSSTSCV 94

BLAST of Cla97C10G200920 vs. TrEMBL
Match: tr|A0A0A0LEW5|A0A0A0LEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-37
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0

Query: 3   RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

BLAST of Cla97C10G200920 vs. TrEMBL
Match: tr|A0A1S3B975|A0A1S3B975_CUCME (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 64/106 (60.38%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFK                                 PE
Sbjct: 7   RNQSQLRGPRPPPLTVNKSSTNIFK-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXPE 66

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 67  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

BLAST of Cla97C10G200920 vs. TrEMBL
Match: tr|A0A2N9GB07|A0A2N9GB07_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-15
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 0

Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
          +  LQL+GPRP PLTVNKSSTKI K+       P+PN R R SPVIIYL+SPK+IHVRPE
Sbjct: 7  KKYLQLQGPRPAPLTVNKSSTKIKKQ-------PLPN-RTRSSPVIIYLQSPKVIHVRPE 66

Query: 63 EFKSFVQRLTGNRSSVAVVTSSCS 87
          EF   VQ+LTGN++   V   S S
Sbjct: 67 EFMGIVQQLTGNQAPSRVAADSSS 82

BLAST of Cla97C10G200920 vs. TrEMBL
Match: tr|A0A1R3JJT0|A0A1R3JJT0_COCAP (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEF 66
          +L+GPRP PL V+ +S+KI KKS+  + L  P  NR     PV+IYLRSPKIIHVRPEEF
Sbjct: 9  ELQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKIIHVRPEEF 68

Query: 67 KSFVQRLTGNRSSVAVVTS 84
           S VQRLTG  S+ A  +S
Sbjct: 69 MSLVQRLTGKDSTTATTSS 87

BLAST of Cla97C10G200920 vs. TrEMBL
Match: tr|A0A1R3HED5|A0A1R3HED5_9ROSI (VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRR--SPVIIYLRSPKIIHVRPEEF 66
          +L+GPRP PL V+ +S+KI KKS+  +     N R +    PV+IYLRSPKIIHVRPEEF
Sbjct: 9  ELQGPRPTPLKVSNTSSKIIKKSSTTSHQAPKNIRSKNIIDPVVIYLRSPKIIHVRPEEF 68

Query: 67 KSFVQRLTGNRSSVAVVT 83
           S VQRLTG  S+ A  T
Sbjct: 69 MSLVQRLTGKDSTTATTT 86

BLAST of Cla97C10G200920 vs. Swiss-Prot
Match: sp|Q8LGD5|MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKN----NPLPIPNRRDRRSPVIIYLRSPKIIH 62
          + QLQ+ GPRP PL+V+K S KI KK  K+                 PV+IY  SPK++H
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI-KKPPKHPAXXXXXXXXXXXXXXXPVVIYAVSPKVVH 78

Query: 63 VRPEEFKSFVQRLTGNRSSV 79
              EF + VQRLTG  S V
Sbjct: 79 ATASEFMNVVQRLTGISSGV 97

BLAST of Cla97C10G200920 vs. Swiss-Prot
Match: sp|Q9CA36|VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.3e-06
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

BLAST of Cla97C10G200920 vs. TAIR10
Match: AT3G18690.1 (MAP kinase substrate 1)

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-08
Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKN----NPLPIPNRRDRRSPVIIYLRSPKIIH 62
          + QLQ+ GPRP PL+V+K S KI KK  K+                 PV+IY  SPK++H
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI-KKPPKHPAXXXXXXXXXXXXXXXPVVIYAVSPKVVH 78

Query: 63 VRPEEFKSFVQRLTGNRSSV 79
              EF + VQRLTG  S V
Sbjct: 79 ATASEFMNVVQRLTGISSGV 97

BLAST of Cla97C10G200920 vs. TAIR10
Match: AT1G68450.1 (VQ motif-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

BLAST of Cla97C10G200920 vs. TAIR10
Match: AT1G21326.1 (VQ motif-containing protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-06
Identity = 34/82 (41.46%), Postives = 37/82 (45.12%), Query Frame = 0

Query: 10 GPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRR---------------SPVIIYLRSP 69
          GPRP PL V   S KI KK     PL  P+                     PVIIY  SP
Sbjct: 13 GPRPIPLKVRGDSHKIIKKP----PLAPPHXXXXXXXXXXXXXXXXXXXPGPVIIYTVSP 72

Query: 70 KIIHVRPEEFKSFVQRLTGNRS 77
          +IIH  P  F + VQRLTG  S
Sbjct: 73 RIIHTHPNNFMTLVQRLTGKTS 90

BLAST of Cla97C10G200920 vs. TAIR10
Match: AT3G18360.1 (VQ motif-containing protein)

HSP 1 Score: 43.5 bits (101), Expect = 9.6e-05
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 16  LTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG 74
           L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+LTG
Sbjct: 46  LKVNKDSHVIKKPP---SPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

BLAST of Cla97C10G200920 vs. TAIR10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 30/79 (37.97%), Postives = 35/79 (44.30%), Query Frame = 0

Query: 10 GPRPPPLTVNKSSTKIFKKSTKNNPLPIPN---------------RRDRRSPVIIYLRSP 69
          GP+P PL V   S KI KK     PL  P+                     PV IY  +P
Sbjct: 13 GPKPTPLKVRGDSHKIIKKP----PLAPPHXXXXXXXXXXXXXXXXXXXXXPVNIYTVTP 72

Query: 70 KIIHVRPEEFKSFVQRLTG 74
          +IIH  P  F + VQRLTG
Sbjct: 73 RIIHTHPNNFMTLVQRLTG 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN59247.14.6e-3781.31hypothetical protein Csa_3G785410 [Cucumis sativus][more]
XP_008443599.12.1e-2160.38PREDICTED: protein MKS1-like [Cucumis melo][more]
OMO95035.13.5e-1358.23VQ motif-containing protein [Corchorus capsularis][more]
OMO68664.13.0e-1256.41VQ motif-containing protein [Corchorus olitorius][more]
XP_018851271.15.1e-1256.32PREDICTED: protein MKS1-like [Juglans regia][more]
Match NameE-valueIdentityDescription
tr|A0A0A0LEW5|A0A0A0LEW5_CUCSA3.0e-3781.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1[more]
tr|A0A1S3B975|A0A1S3B975_CUCME1.4e-2160.38protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1[more]
tr|A0A2N9GB07|A0A2N9GB07_FAGSY2.5e-1560.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1[more]
tr|A0A1R3JJT0|A0A1R3JJT0_COCAP2.3e-1358.23VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 P... [more]
tr|A0A1R3HED5|A0A1R3HED5_9ROSI2.0e-1256.41VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 ... [more]
Match NameE-valueIdentityDescription
sp|Q8LGD5|MKS1_ARATH1.3e-0643.75Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2[more]
sp|Q9CA36|VQ8_ARATH6.3e-0642.17VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Match NameE-valueIdentityDescription
AT3G18690.17.1e-0843.75MAP kinase substrate 1[more]
AT1G68450.13.5e-0742.17VQ motif-containing protein[more]
AT1G21326.13.9e-0641.46VQ motif-containing protein[more]
AT3G18360.19.6e-0543.10VQ motif-containing protein[more]
AT1G21320.12.1e-0437.97nucleotide binding;nucleic acid binding[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G200920.1Cla97C10G200920.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 53..76
e-value: 7.6E-8
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR33143FAMILY NOT NAMEDcoord: 5..96
NoneNo IPR availablePANTHERPTHR33143:SF26F16F4.1 PROTEINcoord: 5..96