ClCG10G017960 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G017960
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	VQ motif-containing family protein
Location	CG_Chr10 : 32921803 .. 32922129 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

mRNA sequence

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

Coding sequence (CDS)

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

Protein sequence

MMRNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS

Homology

[Close]

BLAST of ClCG10G017960 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-11
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDR-----RSPVIIYLRSPKII 62
          + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVV 78

Query: 63 HVRPEEFKSFVQRLTGNRSSV 79
          H    EF + VQRLTG  S V
Sbjct: 79 HATASEFMNVVQRLTGISSGV 97

[Close]

BLAST of ClCG10G017960 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-08
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIPN-----------RRDRRSPVIIYLRSPKIIH 69
           GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +SS S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of ClCG10G017960 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

[Close]

BLAST of ClCG10G017960 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1


Query: 11  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQR 70
           P PP L VNK S  I K  +   P    +    R PVIIY  +P+IIH  P++F + VQ+
Sbjct: 41  PSPPTLKVNKDSHVIKKPPS---PSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQK 100

Query: 71  LTG 74
           LTG
Sbjct: 101 LTG 100

[Close]

BLAST of ClCG10G017960 vs. TrEMBL
Match: A0A0A0LEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-39
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 3   RNQLQLRGPRPPPLTVNKS-STKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNKS ST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

[Close]

BLAST of ClCG10G017960 vs. TrEMBL
Match: B9SDN3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0422690 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-13
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKS 66
          QL+GPRP PL V+K+S+KI KKS   +P   PN R  RSPVIIYL+SP +IHV PEEF+ 
Sbjct: 9  QLQGPRPAPLMVSKNSSKI-KKSLLPHP---PNHR--RSPVIIYLKSPDVIHVTPEEFRG 68

Query: 67 FVQRLTGNRSSVAVVTSSCSTTELITNHS 96
           VQRLTG +     V++S  ++   ++ S
Sbjct: 69 LVQRLTGKKQEQTTVSASSHSSSSCSSSS 91

[Close]

BLAST of ClCG10G017960 vs. TrEMBL
Match: W9STZ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006437 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-13
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 8   LRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSF 67
           L+GPRP PLT+++SS KI K   +  P           P+++YLRSPKIIHVRPEEF S 
Sbjct: 8   LQGPRPTPLTISRSSAKITKIKQRAPP-----------PIVVYLRSPKIIHVRPEEFMSL 67

Query: 68  VQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACN 105
           VQ+LTGN   ++  +S+    E      GEEF S  N
Sbjct: 68  VQQLTGNHPKIS-ASSATRNIEGQNKFYGEEFTSRVN 92

[Close]

BLAST of ClCG10G017960 vs. TrEMBL
Match: A0A0B2SIY5_GLYSO (Protein MKS1 OS=Glycine soja GN=glysoja_024462 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           R +LQL+GPRP PL +NK S KI K          P++   R P+IIY  SPK+IH  P 
Sbjct: 15  RRELQLQGPRPTPLRINKDSHKIKKPPLAPQQPSHPHQPPPRQPIIIYTVSPKVIHTTPS 74

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS 102
           +F + VQRLTG+ SS +VV  + + T +   ++G   +S
Sbjct: 75  DFMNLVQRLTGSSSSSSVVVPNNNNTHVDPFNNGAGMLS 113

[Close]

BLAST of ClCG10G017960 vs. TrEMBL
Match: A0A0R0KIU2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G239400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           R +LQL+GPRP PL +NK S KI K          P++   R P+IIY  SPK+IH  P 
Sbjct: 34  RRELQLQGPRPTPLRINKDSHKIKKPPLAPQQPSHPHQPPPRQPIIIYTVSPKVIHTTPS 93

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS 102
           +F + VQRLTG+ SS +VV  + + T +   ++G   +S
Sbjct: 94  DFMNLVQRLTGSSSSSSVVVPNNNNTHVDPFNNGAGMLS 132

[Close]

BLAST of ClCG10G017960 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDR-----RSPVIIYLRSPKII 62
          + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVV 78

Query: 63 HVRPEEFKSFVQRLTGNRSSV 79
          H    EF + VQRLTG  S V
Sbjct: 79 HATASEFMNVVQRLTGISSGV 97

[Close]

BLAST of ClCG10G017960 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-10
Identity = 38/90 (42.22%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIPN-----------RRDRRSPVIIYLRSPKIIH 69
           GPRP PL V   S KI KK     P P P             R    PVIIY  SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +S  S+T
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSST 102

[Close]

BLAST of ClCG10G017960 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIPN-----------RRDRRSPVIIYLRSPKIIH 69
           GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +SS S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of ClCG10G017960 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

[Close]

BLAST of ClCG10G017960 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1


Query: 11  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQR 70
           P PP L VNK S  I K  +   P    +    R PVIIY  +P+IIH  P++F + VQ+
Sbjct: 41  PSPPTLKVNKDSHVIKKPPS---PSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQK 100

Query: 71  LTG 74
           LTG
Sbjct: 101 LTG 100

[Close]

BLAST of ClCG10G017960 vs. NCBI nr
Match: gi|659085780|ref|XP_008443599.1| (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-42
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPE
Sbjct: 7   RNQSQLRGPRPPPLTVNKSSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPE 66

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 67  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of ClCG10G017960 vs. NCBI nr
Match: gi|700204114|gb|KGN59247.1| (hypothetical protein Csa_3G785410 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 4.3e-39
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 3   RNQLQLRGPRPPPLTVNKS-STKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNKS ST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

[Close]

BLAST of ClCG10G017960 vs. NCBI nr
Match: gi|731398388|ref|XP_010653237.1| (PREDICTED: protein MKS1-like [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 5  QLQLRGPRPPPLTVNKS---STKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 64
          ++Q++GPRP PLTVN+S   S+++ KK       P+P  R RRSPVI+YLRSP IIHV+P
Sbjct: 6  RVQMQGPRPTPLTVNRSCSTSSEMIKK-------PVPKNR-RRSPVIVYLRSPTIIHVKP 65

Query: 65 EEFKSFVQRLTGNRSSVAVVTSSCSTT 89
          ++F   VQ LTGN+SS  +V S CS++
Sbjct: 66 QDFMRLVQSLTGNKSS--MVPSFCSSS 82

[Close]

BLAST of ClCG10G017960 vs. NCBI nr
Match: gi|223536670|gb|EEF38312.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-13
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKS 66
          QL+GPRP PL V+K+S+KI KKS   +P   PN R  RSPVIIYL+SP +IHV PEEF+ 
Sbjct: 9  QLQGPRPAPLMVSKNSSKI-KKSLLPHP---PNHR--RSPVIIYLKSPDVIHVTPEEFRG 68

Query: 67 FVQRLTGNRSSVAVVTSSCSTTELITNHS 96
           VQRLTG +     V++S  ++   ++ S
Sbjct: 69 LVQRLTGKKQEQTTVSASSHSSSSCSSSS 91

[Close]

BLAST of ClCG10G017960 vs. NCBI nr
Match: gi|703152523|ref|XP_010110444.1| (hypothetical protein L484_006437 [Morus notabilis])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 8   LRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSF 67
           L+GPRP PLT+++SS KI K   +  P           P+++YLRSPKIIHVRPEEF S 
Sbjct: 8   LQGPRPTPLTISRSSAKITKIKQRAPP-----------PIVVYLRSPKIIHVRPEEFMSL 67

Query: 68  VQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACN 105
           VQ+LTGN   ++  +S+    E      GEEF S  N
Sbjct: 68  VQQLTGNHPKIS-ASSATRNIEGQNKFYGEEFTSRVN 92

The following BLAST results are available for this feature:

BLAST of ClCG10G017960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	2.9e-11	48.15	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
NSRB_ARATH	6.7e-08	40.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]
VQ8_ARATH	3.3e-07	42.17	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]
VQ20_ARATH	3.7e-06	44.44	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]

BLAST of ClCG10G017960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEW5_CUCSA	3.0e-39	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785410 PE=4 SV=1	[more]
B9SDN3_RICCO	6.3e-13	51.69	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0422690 PE=4 SV=1	[more]
W9STZ0_9ROSA	8.2e-13	46.39	Uncharacterized protein OS=Morus notabilis GN=L484_006437 PE=4 SV=1	[more]
A0A0B2SIY5_GLYSO	3.1e-12	42.42	Protein MKS1 OS=Glycine soja GN=glysoja_024462 PE=4 SV=1	[more]
A0A0R0KIU2_SOYBN	3.1e-12	42.42	Uncharacterized protein OS=Glycine max GN=GLYMA_04G239400 PE=4 SV=1	[more]

BLAST of ClCG10G017960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	1.6e-12	48.15	MAP kinase substrate 1	[more]
AT1G21326.1	9.9e-10	42.22	VQ motif-containing protein	[more]
AT1G21320.1	3.7e-09	40.00	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	1.9e-08	42.17	VQ motif-containing protein	[more]
AT3G18360.1	2.1e-07	44.44	VQ motif-containing protein	[more]

BLAST of ClCG10G017960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085780\|ref\|XP_008443599.1\|	5.4e-42	83.96	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
gi\|700204114\|gb\|KGN59247.1\|	4.3e-39	81.31	hypothetical protein Csa_3G785410 [Cucumis sativus]	[more]
gi\|731398388\|ref\|XP_010653237.1\|	4.0e-13	52.87	PREDICTED: protein MKS1-like [Vitis vinifera]	[more]
gi\|223536670\|gb\|EEF38312.1\|	9.0e-13	51.69	conserved hypothetical protein [Ricinus communis]	[more]
gi\|703152523\|ref\|XP_010110444.1\|	1.2e-12	46.39	hypothetical protein L484_006437 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G017960.1	ClCG10G017960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 53..76 score: 7.
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 7..99 score: 9.7
None	No IPR available	PANTHER	PTHR33143:SF8	SUBFAMILY NOT NAMED	coord: 7..99 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G017960	Csa3G785410	Cucumber (Chinese Long) v2	cuwcgB194
ClCG10G017960	MELO3C009575	Melon (DHL92) v3.5.1	mewcgB315
ClCG10G017960	Cla017590	Watermelon (97103) v1	wcgwmB051
ClCG10G017960	Cla97C10G200920	Watermelon (97103) v2	wcgwmbB038
ClCG10G017960	Bhi11G002064	Wax gourd	wcgwgoB096
ClCG10G017960	CSPI03G35970	Wild cucumber (PI 183967)	cpiwcgB195
ClCG10G017960	Cucsa.242220	Cucumber (Gy14) v1	cgywcgB426
ClCG10G017960	CmaCh06G005530	Cucurbita maxima (Rimu)	cmawcgB726
ClCG10G017960	CmoCh06G005570	Cucurbita moschata (Rifu)	cmowcgB729
ClCG10G017960	Lsi03G017850	Bottle gourd (USVL1VR-Ls)	lsiwcgB219
ClCG10G017960	Cp4.1LG08g09380	Cucurbita pepo (Zucchini)	cpewcgB765
ClCG10G017960	CsGy3G033410	Cucumber (Gy14) v2	cgybwcgB179
ClCG10G017960	MELO3C009575.2	Melon (DHL92) v3.6.1	medwcgB309
ClCG10G017960	Carg16243	Silver-seed gourd	carwcgB0656
ClCG10G017960	CsaV3_3G038330	Cucumber (Chinese Long) v3	cucwcgB199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G017960	Cucurbita maxima (Rimu)	cmawcgB222
ClCG10G017960	Cucurbita moschata (Rifu)	cmowcgB207
ClCG10G017960	Cucurbita pepo (Zucchini)	cpewcgB546
ClCG10G017960	Silver-seed gourd	carwcgB0240