CmaCh06G005530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G005530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	VQ motif-containing protein
Location	Cma_Chr06 : 2628780 .. 2629112 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

mRNA sequence

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

Coding sequence (CDS)

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGACGATTTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACTGGAAACGGATCGTCCCTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGGTCATCCTGACGAGGAATGTGTATCGGCCTGCAATTACATTCCGTCGTAG

Protein sequence

MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS

Homology

[Close]

BLAST of CmaCh06G005530 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 11 LRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S  I  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGNGSSL 81
            EF + VQRLTG  S +
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmaCh06G005530 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-07
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 16  PRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmaCh06G005530 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 13 LRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S TI KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmaCh06G005530 vs. TrEMBL
Match: A0A0A0LEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-29
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 2   NSAARNQLPLRLRGPRPPPLTVNKSSTT-IFKKSTTTNLRPIPN---RRDPVIVYLRSPK 61
           ++AARN    +LRGPRPPPLTVNKSS+T I KKST  N  PI N   RR P+I+YLRSPK
Sbjct: 5   SAAARNHS--QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPK 64

Query: 62  IIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           +IHVRPEEFKSFVQRLTGN SS+AVVA+S SATGMI    DEE VS CN IPS
Sbjct: 65  VIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMI---NDEEFVSVCNCIPS 112

[Close]

BLAST of CmaCh06G005530 vs. TrEMBL
Match: A0A059DJ53_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02544 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 5  ARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPV--IVYLRSPKIIHVR 64
          A +  PL L+GPRP P+ VN+SST +  K      R    RR P   IVYLRSPK+IHV+
Sbjct: 8  AADNKPLSLQGPRPEPMAVNRSSTEMIPKQDFVPARTTSCRRQPATKIVYLRSPKVIHVK 67

Query: 65 PEEFKSFVQRLTGNGSS 80
          PEEF   VQ+LTGN SS
Sbjct: 68 PEEFMGLVQQLTGNQSS 84

[Close]

BLAST of CmaCh06G005530 vs. TrEMBL
Match: A0A0B2QR10_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037734 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-10
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH 60
           MNS A ++   +L+GP+P  L +N++ST I KK      +   +   PVIV+L+SPK+IH
Sbjct: 1   MNSQATSRQK-QLQGPKPASLMINRNSTKISKKQ-----KQHLSHHSPVIVHLKSPKVIH 60

Query: 61  VRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEE---CVSACNYIP 110
           VRPEEF S VQ+LT N  S A  A     +  +  +P E+   C+   + +P
Sbjct: 61  VRPEEFMSLVQQLTRNPVSAAFAAPKMDKSSTVVENPIEDFTGCIGHTSNVP 106

[Close]

BLAST of CmaCh06G005530 vs. TrEMBL
Match: I1NAX0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G202300 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 1  MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH 60
          MNS A ++   +L+GP+P  L +N++ST I K+    +         PVIV+L+SPK+IH
Sbjct: 1  MNSQAASRHK-QLQGPKPASLIINRNSTKISKQKQHLS------HHSPVIVHLKSPKVIH 60

Query: 61 VRPEEFKSFVQRLTGNGSSLAVVAAS 87
          VRPEEF S VQ+LTGN  S A VAA+
Sbjct: 61 VRPEEFMSLVQQLTGNPVSAAAVAAN 79

[Close]

BLAST of CmaCh06G005530 vs. TrEMBL
Match: A0A0B2SA13_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002174 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 1  MNSAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIH 60
          MNS A ++   +L+GP+P  L +N++ST I K+    +         PVIV+L+SPK+IH
Sbjct: 1  MNSQAASRHK-QLQGPKPASLIINRNSTKISKQKQHLS------HHSPVIVHLKSPKVIH 60

Query: 61 VRPEEFKSFVQRLTGNGSSLAVVAAS 87
          VRPEEF S VQ+LTGN  S A VAA+
Sbjct: 61 VRPEEFMSLVQQLTGNPVSAAAVAAN 79

[Close]

BLAST of CmaCh06G005530 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 11 LRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S  I  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGNGSSL 81
            EF + VQRLTG  S +
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmaCh06G005530 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-08
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 16  PRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmaCh06G005530 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 13 LRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S TI KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmaCh06G005530 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 33/90 (36.67%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 15  GPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GPRP PL V   S  I KK       P P                  PVI+Y  SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 75  VRPEEFKSFVQRLTGNGSSLAVVAASFSAT 91
             P  F + VQRLTG  +S +  ++S+S++
Sbjct: 73  THPNNFMTLVQRLTGK-TSTSTTSSSYSSS 101

[Close]

BLAST of CmaCh06G005530 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 31/90 (34.44%), Postives = 40/90 (44.44%), Query Frame = 1


Query: 15  GPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GP+P PL V   S  I KK       P P                  PV +Y  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 75  VRPEEFKSFVQRLTGNGSSLAVVAASFSAT 91
             P  F + VQRLTG  S+    ++S S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of CmaCh06G005530 vs. NCBI nr
Match: gi|659085780|ref|XP_008443599.1| (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTT-NLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 4   TAARNQS--QLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 63

Query: 63  RPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           RPEEFKSFVQRLTGN SS+AVVA+S SA+GMI  H  EE  SACN IPS
Sbjct: 64  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CmaCh06G005530 vs. NCBI nr
Match: gi|700204114|gb|KGN59247.1| (hypothetical protein Csa_3G785410 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 4.1e-29
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 2   NSAARNQLPLRLRGPRPPPLTVNKSSTT-IFKKSTTTNLRPIPN---RRDPVIVYLRSPK 61
           ++AARN    +LRGPRPPPLTVNKSS+T I KKST  N  PI N   RR P+I+YLRSPK
Sbjct: 5   SAAARNHS--QLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPK 64

Query: 62  IIHVRPEEFKSFVQRLTGNGSSLAVVAASFSATGMIAGHPDEECVSACNYIPS 111
           +IHVRPEEFKSFVQRLTGN SS+AVVA+S SATGMI    DEE VS CN IPS
Sbjct: 65  VIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMI---NDEEFVSVCNCIPS 112

[Close]

BLAST of CmaCh06G005530 vs. NCBI nr
Match: gi|629125980|gb|KCW90405.1| (hypothetical protein EUGRSUZ_A02544 [Eucalyptus grandis])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 5  ARNQLPLRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPNRRDPV--IVYLRSPKIIHVR 64
          A +  PL L+GPRP P+ VN+SST +  K      R    RR P   IVYLRSPK+IHV+
Sbjct: 8  AADNKPLSLQGPRPEPMAVNRSSTEMIPKQDFVPARTTSCRRQPATKIVYLRSPKVIHVK 67

Query: 65 PEEFKSFVQRLTGNGSS 80
          PEEF   VQ+LTGN SS
Sbjct: 68 PEEFMGLVQQLTGNQSS 84

[Close]

BLAST of CmaCh06G005530 vs. NCBI nr
Match: gi|743884474|ref|XP_010909697.1| (PREDICTED: uncharacterized protein LOC105035726 [Elaeis guineensis])

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 13 LRGPRPPPLTVNKSSTTIFKKSTTTNLR-PIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          ++GPRPPPL V K S  I K ++ T+ + P  +RRDPVIVY+ +PK+IH RP++F S VQ
Sbjct: 8  IQGPRPPPLKVGKDSRKIKKPTSLTSSQLPPSSRRDPVIVYIHTPKVIHTRPQDFMSLVQ 67

Query: 73 RLTGNGSS 80
          RLTG  S+
Sbjct: 68 RLTGKSSA 75

[Close]

BLAST of CmaCh06G005530 vs. NCBI nr
Match: gi|731398388|ref|XP_010653237.1| (PREDICTED: protein MKS1-like [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 11 LRLRGPRPPPLTVNKSSTTIFKKSTTTNLRPIPN--RRDPVIVYLRSPKIIHVRPEEFKS 70
          ++++GPRP PLTVN+S +T    S+    +P+P   RR PVIVYLRSP IIHV+P++F  
Sbjct: 7  VQMQGPRPTPLTVNRSCST----SSEMIKKPVPKNRRRSPVIVYLRSPTIIHVKPQDFMR 66

Query: 71 FVQRLTGNGSSLAVVAASFSATGMIA 95
           VQ LTGN SS+     S S++ + A
Sbjct: 67 LVQSLTGNKSSMVPSFCSSSSSCVTA 88

The following BLAST results are available for this feature:

BLAST of CmaCh06G005530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	2.6e-07	42.31	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
VQ20_ARATH	9.8e-07	43.33	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]
VQ8_ARATH	1.7e-06	46.88	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]

BLAST of CmaCh06G005530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEW5_CUCSA	2.8e-29	70.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785410 PE=4 SV=1	[more]
A0A059DJ53_EUCGR	1.2e-11	54.55	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02544 PE=4 SV=1	[more]
A0A0B2QR10_GLYSO	5.0e-10	39.29	Uncharacterized protein OS=Glycine soja GN=glysoja_037734 PE=4 SV=1	[more]
I1NAX0_SOYBN	6.6e-10	48.84	Uncharacterized protein OS=Glycine max GN=GLYMA_19G202300 PE=4 SV=1	[more]
A0A0B2SA13_GLYSO	6.6e-10	48.84	Uncharacterized protein OS=Glycine soja GN=glysoja_002174 PE=4 SV=1	[more]

BLAST of CmaCh06G005530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	1.5e-08	42.31	MAP kinase substrate 1	[more]
AT3G18360.1	5.5e-08	43.33	VQ motif-containing protein	[more]
AT1G68450.1	9.4e-08	46.88	VQ motif-containing protein	[more]
AT1G21326.1	1.8e-06	36.67	VQ motif-containing protein	[more]
AT1G21320.1	8.8e-06	34.44	nucleotide binding;nucleic acid binding	[more]

BLAST of CmaCh06G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085780\|ref\|XP_008443599.1\|	1.5e-31	74.31	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
gi\|700204114\|gb\|KGN59247.1\|	4.1e-29	70.80	hypothetical protein Csa_3G785410 [Cucumis sativus]	[more]
gi\|629125980\|gb\|KCW90405.1\|	1.7e-11	54.55	hypothetical protein EUGRSUZ_A02544 [Eucalyptus grandis]	[more]
gi\|743884474\|ref\|XP_010909697.1\|	6.6e-11	54.41	PREDICTED: uncharacterized protein LOC105035726 [Elaeis guineensis]	[more]
gi\|731398388\|ref\|XP_010653237.1\|	3.3e-10	48.84	PREDICTED: protein MKS1-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G005530.1	CmaCh06G005530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 55..78 score: 9.
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 1..100 score: 4.6
None	No IPR available	PANTHER	PTHR33143:SF8	SUBFAMILY NOT NAMED	coord: 1..100 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G005530	Cucsa.242220	Cucumber (Gy14) v1	cgycmaB0681
CmaCh06G005530	Cla017590	Watermelon (97103) v1	cmawmB788
CmaCh06G005530	Csa3G785410	Cucumber (Chinese Long) v2	cmacuB816
CmaCh06G005530	MELO3C009575	Melon (DHL92) v3.5.1	cmameB755
CmaCh06G005530	ClCG10G017960	Watermelon (Charleston Gray)	cmawcgB726
CmaCh06G005530	CSPI03G35970	Wild cucumber (PI 183967)	cmacpiB828
CmaCh06G005530	CmoCh06G005570	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G005530	Lsi03G017850	Bottle gourd (USVL1VR-Ls)	cmalsiB754
CmaCh06G005530	Cp4.1LG08g09380	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G005530	MELO3C009575.2	Melon (DHL92) v3.6.1	cmamedB855
CmaCh06G005530	CsaV3_3G038330	Cucumber (Chinese Long) v3	cmacucB0966
CmaCh06G005530	Cla97C10G200920	Watermelon (97103) v2	cmawmbB844
CmaCh06G005530	Bhi11G002064	Wax gourd	cmawgoB0978
CmaCh06G005530	CsGy3G033410	Cucumber (Gy14) v2	cgybcmaB428
CmaCh06G005530	Carg16243	Silver-seed gourd	carcmaB0957

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G005530	Cucurbita pepo (Zucchini)	cmacpeB830
CmaCh06G005530	Silver-seed gourd	carcmaB0350
CmaCh06G005530	Cucurbita maxima (Rimu)	cmacmaB278
CmaCh06G005530	Cucurbita moschata (Rifu)	cmacmoB792