CsGy3G015580 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G015580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr3 : 11517163 .. 11518435 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATTCAATGTAGTTCAGAAGCAAAGGCGGGCTGCTAAAGCTCAGATAAAGAGAGACGCCCATGGTGATCCTTTGACCAAGAAGCTCAAGATCAAGCAACAACCTACTTATGTATCCAACAAGCGTAAGCGCAAATTGATGAAGAAAAAGCGCAGGGTACGGTTTTCTTTTTTGCTCTCTCTTGTTTCTACTTTATATTTTCAATTCAAAGTATCTCTGTTGCGAATTGATTGTTCTTTTTTTTTTTTTTTTCCGATTATTTTCAGGAAGAGAAGGAAGCTTTACAGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATGAAGCTTTCTTGTGCTTATTGATAAATTATGAAATCGGGATGCTGTTGCTAATTTCATATTTGAACTTGTTTGCTTCAATTGTCAAGTTCCTATGGGGGGTTTCTTCCAATTTTAACTTGTTGGATTGGAGGAGCTGAAGGAGACCTTTGTTGAATGTGTTTCGTTACTGGGTATTTAGTTCATTTCCCTCTCTAAGTCAGTTTAGGAATCAAGCGGGTTTTAAGCGAGGCCATACAAATGACATAATGAATAGAGGCAATTTTGGTTAGATAAGTGTACCCACCTTGCTAGCTTCTTCTAAACATAGATGCTCTACACATATTGTAAGAAGTGCTATTTGAACTTTGTGAGTTTGTTTAATCTGAGAGTGGGATGGGAATCTCTTATCCATAAGAAGGTGGGATGGGAATCATTTGATCGAAGAACTTGGAATGCTCGGGGCATGTAATATAGTGATTTTTAAATTGTTAAAAGCTTGTTCAAAAATTAAAATAGCCTCGAGACATGACCCTAATCATTCAAAATCAAATTCAATTTTGACTGCACAAAAGCCATGTTTAAAAACACATTTTTTGGAGTGATTTCGTACCTGAAAAAAATTATCTTAAACCATTCCAAAATCACTTCGGAGCATGCCTTCAAAGTATCAATAGAATATTTTCTATTGCCTCGGCTTTTCTTTCCTTCCTCAATTCCTCTAGCTAAAGAAATTTTCTAATTAATGGAACAGTTGTAAAAGTTGGAAAGATACATTTTCGAATGGTTTGTGTCAAAGGGAAAAAGTTCGGTTTTGTGGTACCCGAATCTTTTAATGAAATCAGTTTTGGTGACAGGGTTATGGAGAAGAAATCAAACATTTCCCTAAGCACTGTGCTCTTTTTTTGCCCACTAAGTTATTATTTATTATAATAAACTAGGAACTCAGTAG

mRNA sequence

ATGGCGAAATTCAATGTAGTTCAGAAGCAAAGGCGGGCTGCTAAAGCTCAGATAAAGAGAGACGCCCATGGTGATCCTTTGACCAAGAAGCTCAAGATCAAGCAACAACCTACTTATGTATCCAACAAGCGTAAGCGCAAATTGATGAAGAAAAAGCGCAGGGAAGAGAAGGAAGCTTTACAGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGAACTCAGTAG

Coding sequence (CDS)

ATGGCGAAATTCAATGTAGTTCAGAAGCAAAGGCGGGCTGCTAAAGCTCAGATAAAGAGAGACGCCCATGGTGATCCTTTGACCAAGAAGCTCAAGATCAAGCAACAACCTACTTATGTATCCAACAAGCGTAAGCGCAAATTGATGAAGAAAAAGCGCAGGGAAGAGAAGGAAGCTTTACAGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGAACTCAGTAG

Protein sequence

MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEALQMGLTNMEDVEMAVAEGTQ

Homology

[Close]

BLAST of CsGy3G015580 vs. NCBI nr
Match: XP_004147642.1 (PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. NCBI nr
Match: XP_004147643.1 (PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus] >KGN57224.1 hypothetical protein Csa_3G171810 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. NCBI nr
Match: XP_008439032.1 (PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA +AQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. NCBI nr
Match: XP_008439033.1 (PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA +AQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. NCBI nr
Match: XP_023523067.1 (uncharacterized protein LOC111787215, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA KAQ KRDAHGDPLTKKLKIKQQPTYVS  XXXXXXXXXXXXXX AL
Sbjct: 1  MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSXXXXXXXXXXXXXXXXXAL 60

Query: 61 QMGLTNMEDVEMAVAEG 78
          QMGLTNMEDVEMAVAEG
Sbjct: 61 QMGLTNMEDVEMAVAEG 77

[Close]

BLAST of CsGy3G015580 vs. TAIR10
Match: AT1G08580.1 (unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAK+N + K++R AKA  KR  HGDPLT KLK +     VS K              + +
Sbjct: 1  MAKYNEIAKKKREAKADRKRAIHGDPLTNKLKTRTPVPSVSGKRQRKLLRKWRREQKDMV 60

Query: 61 QMGLTNMEDVEMAVAE 77
          + GL  MEDVEMA A+
Sbjct: 61 EKGLVTMEDVEMASAQ 76

[Close]

BLAST of CsGy3G015580 vs. TrEMBL
Match: tr|A0A0A0L881|A0A0A0L881_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171810 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.9e-23
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. TrEMBL
Match: tr|A0A1S3AXD1|A0A1S3AXD1_CUCME (uncharacterized protein LOC103483941 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483941 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA +AQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. TrEMBL
Match: tr|A0A1S3AXT9|A0A1S3AXT9_CUCME (uncharacterized protein LOC103483941 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483941 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA +AQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 QMGLTNMEDVEMAVAE 77
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CsGy3G015580 vs. TrEMBL
Match: tr|I1N5M8|I1N5M8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G000800 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S K              +AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 QMGLTNMEDVEMAVAEG 78
          Q GL  MEDV+MAVAEG
Sbjct: 61 QNGLVTMEDVQMAVAEG 77

[Close]

BLAST of CsGy3G015580 vs. TrEMBL
Match: tr|I1K1P8|I1K1P8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500554 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S K              +AL
Sbjct: 1  MAKFNVVQKRRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 QMGLTNMEDVEMAVAEG 78
          Q GL  MEDV+MAVAEG
Sbjct: 61 QNGLVTMEDVQMAVAEG 77

The following BLAST results are available for this feature:

BLAST of CsGy3G015580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147642.1	1.0e-22	100.00	PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus]	[more]
XP_004147643.1	1.0e-22	100.00	PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus] >KG...	[more]
XP_008439032.1	6.8e-22	97.37	PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo]	[more]
XP_008439033.1	6.8e-22	97.37	PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo]	[more]
XP_023523067.1	6.3e-20	93.51	uncharacterized protein LOC111787215, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G015580 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08580.1	2.7e-09	43.42	unknown protein	[more]

BLAST of CsGy3G015580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G015580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L881\|A0A0A0L881_CUCSA	6.9e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171810 PE=4 SV=1	[more]
tr\|A0A1S3AXD1\|A0A1S3AXD1_CUCME	4.5e-22	97.37	uncharacterized protein LOC103483941 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AXT9\|A0A1S3AXT9_CUCME	4.5e-22	97.37	uncharacterized protein LOC103483941 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|I1N5M8\|I1N5M8_SOYBN	3.2e-12	58.44	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G000800 PE=4 SV=1	[more]
tr\|I1K1P8\|I1K1P8_SOYBN	3.2e-12	58.44	Uncharacterized protein OS=Glycine max OX=3847 GN=100500554 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G015580.1	CsGy3G015580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..30
None	No IPR available	PANTHER	PTHR36709	FAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G015580	Cla021847	Watermelon (97103) v1	cgybwmB217
CsGy3G015580	Csa3G171810	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G015580	MELO3C006770	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G015580	ClCG05G007020	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G015580	CSPI03G15530	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G015580	CmaCh06G015980	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G015580	CmoCh06G015930	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G015580	CmoCh14G015810	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G015580	Lsi05G013700	Bottle gourd (USVL1VR-Ls)	cgyblsiB197
CsGy3G015580	Cp4.1LG08g05520	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G015580	Cp4.1LG03g12190	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G015580	MELO3C006770.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G015580	CsaV3_3G015710	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G015580	Cla97C05G088700	Watermelon (97103) v2	cgybwmbB196
CsGy3G015580	Bhi01G000840	Wax gourd	cgybwgoB257
CsGy3G015580	Carg19584	Silver-seed gourd	carcgybB0294
CsGy3G015580	Carg15517	Silver-seed gourd	carcgybB0691

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G015580	Cucurbita maxima (Rimu)	cgybcmaB318