CmoCh06G015930 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pm52 protein
Location	Cmo_Chr06 : 11166213 .. 11166633 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAGTGGTGAAACGAATCCGGAAGTTGAAGACGATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATAAAGCTCAGACGAAGAGGGACGCCCATGGTGATCCCTTGACGAAGAAGCTAAAGATCAAGCAACAGCCTACTTATGTTTCCAGTAAGCGTAAGCGCAAGTTGATGAAGAAAAAACGCAGAGTATGGATTCTATGTGCCTGCGTTTGTTTTGTGCTATGTATTTCAATTGAAAGTATCTGTGATGCGGATTGATTGTTCGCTTTTTGTTCGATTCTTGTTCGATTCTTGCTAATTGCAGGAAGAGAAGGAAGCTTTACAGATGGGGCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATTCTTTCATATGCTATTGCTATTTTCGTATTTGA

mRNA sequence

GTTTCAGTGGTGAAACGAATCCGGAAGTTGAAGACGATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATAAAGCTCAGACGAAGAGGGACGCCCATGGTGATCCCTTGACGAAGAAGCTAAAGATCAAGCAACAGCCTACTTATGTTTCCAGTAAGCGTAAGCGCAAGTTGATGAAGAAAAAACGCAGAGAAGAGAAGGAAGCTTTACAGATGGGGCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATTCTTTCATATGCTATTGCTATTTTCGTATTTGA

Coding sequence (CDS)

GTTTCAGTGGTGAAACGAATCCGGAAGTTGAAGACGATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATAAAGCTCAGACGAAGAGGGACGCCCATGGTGATCCCTTGACGAAGAAGCTAAAGATCAAGCAACAGCCTACTTATGTTTCCAGTAAGCGTAAGCGCAAGTTGATGAAGAAAAAACGCAGAGAAGAGAAGGAAGCTTTACAGATGGGGCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATTCTTTCATATGCTATTGCTATTTTCGTATTTGA

Homology

[Close]

BLAST of CmoCh06G015930 vs. TrEMBL
Match: A0A0A0L881_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171810 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQKQRRA KAQ KRDAHGDPLTKKLKIKQQPTYVS+KRKRKLMKKKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 73 QMGLTNMEDVEMAVAE 89
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CmoCh06G015930 vs. TrEMBL
Match: I1N5M8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G000800 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S KRKRKL KK RR++K+AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          Q GL  MEDV+MAVAEG++
Sbjct: 61 QNGLVTMEDVQMAVAEGDT 79

[Close]

BLAST of CmoCh06G015930 vs. TrEMBL
Match: A0A0B2R183_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022199 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S KRKRKL KK RR++K+AL
Sbjct: 1  MAKFNVVQKRRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          Q GL  MEDV+MAVAEG++
Sbjct: 61 QNGLVTMEDVQMAVAEGDT 79

[Close]

BLAST of CmoCh06G015930 vs. TrEMBL
Match: I1K1P8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G000800 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S KRKRKL KK RR++K+AL
Sbjct: 1  MAKFNVVQKRRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          Q GL  MEDV+MAVAEG++
Sbjct: 61 QNGLVTMEDVQMAVAEGDT 79

[Close]

BLAST of CmoCh06G015930 vs. TrEMBL
Match: A0A0B2QIW9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037209 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S KRKRKL KK RR++K+AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          Q GL  MEDV+MAVAEG++
Sbjct: 61 QNGLVTMEDVQMAVAEGDT 79

[Close]

BLAST of CmoCh06G015930 vs. TAIR10
Match: AT1G08580.1 (AT1G08580.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 8.0e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAK+N + K++R  KA  KR  HGDPLT KLK +     VS KR+RKL++K RRE+K+ +
Sbjct: 1  MAKYNEIAKKKREAKADRKRAIHGDPLTNKLKTRTPVPSVSGKRQRKLLRKWRREQKDMV 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          + GL  MEDVEMA A+  S
Sbjct: 61 EKGLVTMEDVEMASAQAAS 79

[Close]

BLAST of CmoCh06G015930 vs. NCBI nr
Match: gi|449459818|ref|XP_004147643.1| (PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQKQRRA KAQ KRDAHGDPLTKKLKIKQQPTYVS+KRKRKLMKKKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 73 QMGLTNMEDVEMAVAE 89
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CmoCh06G015930 vs. NCBI nr
Match: gi|449459816|ref|XP_004147642.1| (PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQKQRRA KAQ KRDAHGDPLTKKLKIKQQPTYVS+KRKRKLMKKKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 73 QMGLTNMEDVEMAVAE 89
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CmoCh06G015930 vs. NCBI nr
Match: gi|659077099|ref|XP_008439032.1| (PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQKQRRA +AQ KRDAHGDPLTKKLKIKQQPTYVS+KRKRKLMKKKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 73 QMGLTNMEDVEMAVAE 89
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CmoCh06G015930 vs. NCBI nr
Match: gi|659077101|ref|XP_008439033.1| (PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQKQRRA +AQ KRDAHGDPLTKKLKIKQQPTYVS+KRKRKLMKKKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 73 QMGLTNMEDVEMAVAE 89
          QMGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of CmoCh06G015930 vs. NCBI nr
Match: gi|571453111|ref|XP_006579370.1| (PREDICTED: uncharacterized protein LOC100500554 isoform X1 [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 13 MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSSKRKRKLMKKKRREEKEAL 72
          MAKFNVVQK+RRA  A+ KR  HGDPLT KLKIK QP  +S KRKRKL KK RR++K+AL
Sbjct: 1  MAKFNVVQKRRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 73 QMGLTNMEDVEMAVAEGNS 92
          Q GL  MEDV+MAVAEG++
Sbjct: 61 QNGLVTMEDVQMAVAEGDT 79

The following BLAST results are available for this feature:

BLAST of CmoCh06G015930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G015930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L881_CUCSA	2.2e-28	96.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171810 PE=4 SV=1	[more]
I1N5M8_SOYBN	1.0e-17	69.62	Uncharacterized protein OS=Glycine max GN=GLYMA_19G000800 PE=4 SV=1	[more]
A0A0B2R183_GLYSO	1.0e-17	69.62	Uncharacterized protein OS=Glycine soja GN=glysoja_022199 PE=4 SV=1	[more]
I1K1P8_SOYBN	1.0e-17	69.62	Uncharacterized protein OS=Glycine max GN=GLYMA_05G000800 PE=4 SV=1	[more]
A0A0B2QIW9_GLYSO	1.0e-17	69.62	Uncharacterized protein OS=Glycine soja GN=glysoja_037209 PE=4 SV=1	[more]

BLAST of CmoCh06G015930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08580.1	8.0e-14	53.16	unknown protein	[more]

BLAST of CmoCh06G015930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459818\|ref\|XP_004147643.1\|	3.1e-28	96.05	PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus]	[more]
gi\|449459816\|ref\|XP_004147642.1\|	3.1e-28	96.05	PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus]	[more]
gi\|659077099\|ref\|XP_008439032.1\|	9.1e-28	94.74	PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo]	[more]
gi\|659077101\|ref\|XP_008439033.1\|	9.1e-28	94.74	PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo]	[more]
gi\|571453111\|ref\|XP_006579370.1\|	1.5e-17	69.62	PREDICTED: uncharacterized protein LOC100500554 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015930.1	CmoCh06G015930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36709	FAMILY NOT NAMED	coord: 13..89 score: 1.7
None	No IPR available	PANTHER	PTHR36709:SF1	SUBFAMILY NOT NAMED	coord: 13..89 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015930	Cucsa.252020	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015930	CmaCh06G015980	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015930	Cla021847	Watermelon (97103) v1	cmowmB793
CmoCh06G015930	Csa3G171810	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015930	MELO3C006770	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015930	ClCG05G007020	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015930	CSPI03G15530	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015930	Lsi05G013700	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015930	Cp4.1LG03g12190	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015930	Cp4.1LG08g05520	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015930	MELO3C006770.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015930	CsaV3_3G015710	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015930	Cla97C05G088700	Watermelon (97103) v2	cmowmbB833
CmoCh06G015930	Bhi01G000840	Wax gourd	cmowgoB1005
CmoCh06G015930	CsGy3G015580	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015930	Carg15517	Silver-seed gourd	carcmoB0947
CmoCh06G015930	Carg19584	Silver-seed gourd	carcmoB0390

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G015930	CmoCh14G015810	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015930	Cucurbita maxima (Rimu)	cmacmoB271