Carg19584 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19584
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine--tRNA ligase
Location	Cucurbita_argyrosperma_scaffold_117 : 10656 .. 12986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGTTGAAGATCAAGCAACAACCTACTTATGTATCTAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGTCGAGTATGGTTTCTATAAGCTTTGCGCTTGTTTCTGCGTGTGAATTTCTGCTAAATATTGCAATTAAAAGCATCTGTGTTGCGGATTGATTGTTCTTTTTTTTCTTTTTTTTTTTCTTCGCTTCGTACTAATTACAGGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATGATTTCATACGCTTATTGGTAAAATGAGGATTATCGGGATGCTTTTGCTAATTTCACATGTGAACTGTTCCTTCAATTGTCAATTTCCTGTGGGGTTTTCCTTCCAATGTAACTTTTTGAAGGAGCTGTAGGAGACCTTTGTTGAATATCTTAAGTTCATTTTCCCCTTGAAGTCACTTCAGGAATTCGGTTGGTTTTAAGCGTCGGCCTGGTCCAATAATTTTACGAATGACCAAATGAACAGAGTAAATTTTGGTTAGATTACTGTCCTCAAATTGCTAGAATCATCTAAACATAGATATTCTACACATGTTGTAAGAAGTGATGTTTGAATTTTGTGAGTTTAAAAGTGGGAATCACTTGATAAATAAACTTGGACCATCTGTTTAACAGTGATTCTGAAATCATTGAAATCACTATTATCCTGCTCAAAATCACTCTAATCATGCTTTGAATCATAGAAAATCAATTTAATGTTTAATTTTACACTTTCATACCTGATTTTCGTACCATTAAAATTAATCGAATGATCAAAAACATGTTTTAGAGTGATTTTGAACATAAAAAAGTGATCTTAACCATTTCAAAATTACTCCCAAATATGCCATCAAAGTCCCTATGACTTGTAGCTACCTTGGCTTTTTTTTTCTTGCTTGCTTCCTCAATCAATGAAACTTGTAAAGTAAAGGAGCAGCTGTCAAGTTGGGACGATATATTTCCAAATGATTTGTGTCAAAGTGAAAAGGATTGGTTTTGTGGTACCTTGATCTTTCAATCTAAGCCAAGTTGGTGATAGGGTTGTGTTGAAGAAGGCAAATATATTTTACTAGGCACTGCTTTTGGAAAAATATACATACATACATATATATGTATATATAATAGGAGGGAACCCAAGCACCAAGCCACGAAAGATTGCTTAGAACTCTTCCAATTGGCACATGGATCATTTAAACTATAGTTGCTGAAGGGGATATATCGTTTACACGCAATAGCCACAAAAGACAAGTTATCAAAACAATATCAAAATTCTTCTCGATGTTGTTTATGTTCTGTTATCTGTTTCCCAAGATTCCAAAAGAAATCTCAACTACTTGAGGCCATAGAAAGAATATTTTTCCTTGGTGAACGGTTGATCTGTCATGAAAAAAATGTAAAAGGGCCTTTTTATTAGATGGGATGGCCATGAGAAATAGGGAATCTTCTTTCCCATTTTGTAGTTTGCTTGTGATCTTTTACTATGCTTGATTTACTTACAGGACGTTCCTTCACTTCTCATACTGAAATTTAGAACTAATAATTGGAAAGGTGATCTATAGTGCAACGTTTTGTTGAGCTAGTAGTCCTTGTGGTCTCTGTATGTGTGTGCACATGTTTGTTCATCGGATCTTTGGATTCAATAATCGTTTCCACCCTTCACATTTTGGACCACTTTTGGCATATTTCCCACATGCTACAAAAGGCTTGTGGTTCTTGTAAAACTGGTTGGGTATCATTTGTCTGATTTATAATGTGCACAATGTTGGTTGGATTCCGATGAACAGGGGATGAATGTATCAGAATTGACAATTGGGTATTTTTATATTTTGTGCAAACATATATCTCAAAGTACTCCGGCCCCCACATTCTTTCTTTACCCACTCTCAATTTGGTACAACTTGATTGAACTAGTCTTCACTTTTTGTGCTCGATTTATTCGCTTCGAATGAGAATTTTCGGTTGCTATGATGCAGAACTTAAAAACACCAATGGGACGTCAACCAAGTTTCGTGTGAAGAAGAGTGTCAGGCTCCGGCAATTGAAGAGCAAAGGCAAGTTTTGTCTATCTACTCTATTTCTCTTCTCTTATTTTGTACTACTTACCAATAAATCTACCAAATATTTGGAATGTATAGGCAAGAAGAATAAAGGGAAAGGTTCTTCCAGTGCAGGCTCTACAGCATCAGGCGATGCTATGGTAGAGTAA

mRNA sequence

ATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGTTGAAGATCAAGCAACAACCTACTTATGTATCTAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGTCGAGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATGATTTCATACGCTTATTGGACGTTCCTTCACTTCTCATACTGAAATTTAGAACTAATAATTGGAAAGGCAAGAAGAATAAAGGGAAAGGTTCTTCCAGTGCAGGCTCTACAGCATCAGGCGATGCTATGGTAGAGTAA

Coding sequence (CDS)

ATGGCGAAGTTCAATGTGGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGTTGAAGATCAAGCAACAACCTACTTATGTATCTAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGTCGAGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATGATTTCATACGCTTATTGGACGTTCCTTCACTTCTCATACTGAAATTTAGAACTAATAATTGGAAAGGCAAGAAGAATAAAGGGAAAGGTTCTTCCAGTGCAGGCTCTACAGCATCAGGCGATGCTATGGTAGAGTAA

Protein sequence

MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEALRMGLTNMEDVEMAVAEGNDFIRLLDVPSLLILKFRTNNWKGKKNKGKGSSSAGSTASGDAMVE

Homology

[Close]

BLAST of Carg19584 vs. NCBI nr
Match: XP_022955682.1 (uncharacterized protein LOC111457610 [Cucurbita moschata] >XP_022955683.1 uncharacterized protein LOC111457610 [Cucurbita moschata])

HSP 1 Score: 113.6 bits (283), Expect = 4.7e-22
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAE 77
          RMGLTNMEDVEMAVAE
Sbjct: 61 RMGLTNMEDVEMAVAE 76

[Close]

BLAST of Carg19584 vs. NCBI nr
Match: XP_023528213.1 (uncharacterized protein LOC111791195 [Cucurbita pepo subsp. pepo] >XP_023528214.1 uncharacterized protein LOC111791195 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 4.7e-22
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAE 77
          RMGLTNMEDVEMAVAE
Sbjct: 61 RMGLTNMEDVEMAVAE 76

[Close]

BLAST of Carg19584 vs. NCBI nr
Match: XP_022979985.1 (uncharacterized protein LOC111479514 [Cucurbita maxima] >XP_022979986.1 uncharacterized protein LOC111479514 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAHIAQSKR AHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAHIAQSKRNAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAE 77
          RMGLTNMEDVEMAVAE
Sbjct: 61 RMGLTNMEDVEMAVAE 76

[Close]

BLAST of Carg19584 vs. NCBI nr
Match: XP_023523067.1 (uncharacterized protein LOC111787215, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRAH AQ+KR AHGDPLTKKLKIKQQPTYVS XXXXXXXXXXXXXXX AL
Sbjct: 1  MAKFNVVQKQRRAHKAQTKRDAHGDPLTKKLKIKQQPTYVSXXXXXXXXXXXXXXXXXAL 60

Query: 61 RMGLTNMEDVEMAVAEG 78
          +MGLTNMEDVEMAVAEG
Sbjct: 61 QMGLTNMEDVEMAVAEG 77

[Close]

BLAST of Carg19584 vs. NCBI nr
Match: XP_004147642.1 (PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+ XXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAEGNDFIRLLD 86
          +MGLTNMEDVEMAVAE  D  ++L+
Sbjct: 61 QMGLTNMEDVEMAVAEAKDSPQILE 85

[Close]

BLAST of Carg19584 vs. TAIR10
Match: AT1G08580.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-08
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAK+N + K++R   A  KRA HGDPLT KLK +     VS                + +
Sbjct: 1  MAKYNEIAKKKREAKADRKRAIHGDPLTNKLKTRTPVPSVSGKRQRKLLRKWRREQKDMV 60

Query: 61 RMGLTNMEDVEMAVAE 77
            GL  MEDVEMA A+
Sbjct: 61 EKGLVTMEDVEMASAQ 76

[Close]

BLAST of Carg19584 vs. TrEMBL
Match: tr|A0A1S3AXT9|A0A1S3AXT9_CUCME (uncharacterized protein LOC103483941 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483941 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+ XXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAEGNDFIRLLD 86
          +MGLTNMEDVEMAVAE  D  ++L+
Sbjct: 61 QMGLTNMEDVEMAVAEAKDSPQILE 85

[Close]

BLAST of Carg19584 vs. TrEMBL
Match: tr|A0A0A0L881|A0A0A0L881_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171810 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+ XXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAE 77
          +MGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of Carg19584 vs. TrEMBL
Match: tr|A0A1S3AXD1|A0A1S3AXD1_CUCME (uncharacterized protein LOC103483941 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483941 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.1e-18
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+ XXXXXXXXXXXXXXEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKXXXXXXXXXXXXXXEAL 60

Query: 61 RMGLTNMEDVEMAVAE 77
          +MGLTNMEDVEMAVAE
Sbjct: 61 QMGLTNMEDVEMAVAE 76

[Close]

BLAST of Carg19584 vs. TrEMBL
Match: tr|I1N5M8|I1N5M8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G000800 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQK+RRA IA+ KR  HGDPLT KLKIK QP  +S                +AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 RMGLTNMEDVEMAVAEGN 79
          + GL  MEDV+MAVAEG+
Sbjct: 61 QNGLVTMEDVQMAVAEGD 78

[Close]

BLAST of Carg19584 vs. TrEMBL
Match: tr|I1K1P8|I1K1P8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500554 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSXXXXXXXXXXXXXXXEAL 60
          MAKFNVVQK+RRA IA+ KR  HGDPLT KLKIK QP  +S                +AL
Sbjct: 1  MAKFNVVQKRRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 RMGLTNMEDVEMAVAEGN 79
          + GL  MEDV+MAVAEG+
Sbjct: 61 QNGLVTMEDVQMAVAEGD 78

The following BLAST results are available for this feature:

BLAST of Carg19584 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955682.1	4.7e-22	100.00	uncharacterized protein LOC111457610 [Cucurbita moschata] >XP_022955683.1 unchar...	[more]
XP_023528213.1	4.7e-22	100.00	uncharacterized protein LOC111791195 [Cucurbita pepo subsp. pepo] >XP_023528214....	[more]
XP_022979985.1	2.3e-21	98.68	uncharacterized protein LOC111479514 [Cucurbita maxima] >XP_022979986.1 uncharac...	[more]
XP_023523067.1	2.9e-19	92.21	uncharacterized protein LOC111787215, partial [Cucurbita pepo subsp. pepo]	[more]
XP_004147642.1	3.7e-19	83.53	PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus]	[more]

BLAST of Carg19584 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08580.1	8.1e-08	40.79	unknown protein	[more]

BLAST of Carg19584 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19584 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXT9\|A0A1S3AXT9_CUCME	3.2e-19	83.53	uncharacterized protein LOC103483941 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L881\|A0A0A0L881_CUCSA	4.7e-18	90.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171810 PE=4 SV=1	[more]
tr\|A0A1S3AXD1\|A0A1S3AXD1_CUCME	6.1e-18	90.79	uncharacterized protein LOC103483941 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|I1N5M8\|I1N5M8_SOYBN	2.9e-12	56.41	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G000800 PE=4 SV=1	[more]
tr\|I1K1P8\|I1K1P8_SOYBN	2.9e-12	56.41	Uncharacterized protein OS=Glycine max OX=3847 GN=100500554 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19584-RA	Carg19584-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123
None	No IPR available	PANTHER	PTHR36709	FAMILY NOT NAMED	coord: 1..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19584	Cla021847	Watermelon (97103) v1	carwmB0269
Carg19584	Csa3G171810	Cucumber (Chinese Long) v2	carcuB0306
Carg19584	MELO3C006770	Melon (DHL92) v3.5.1	carmeB0280
Carg19584	ClCG05G007020	Watermelon (Charleston Gray)	carwcgB0271
Carg19584	CSPI03G15530	Wild cucumber (PI 183967)	carcpiB0310
Carg19584	Cucsa.252020	Cucumber (Gy14) v1	carcgyB0329
Carg19584	CmaCh06G015980	Cucurbita maxima (Rimu)	carcmaB0393
Carg19584	CmoCh14G015810	Cucurbita moschata (Rifu)	carcmoB0388
Carg19584	CmoCh06G015930	Cucurbita moschata (Rifu)	carcmoB0390
Carg19584	Lsi05G013700	Bottle gourd (USVL1VR-Ls)	carlsiB253
Carg19584	Cp4.1LG08g05520	Cucurbita pepo (Zucchini)	carcpeB0396
Carg19584	Cp4.1LG03g12190	Cucurbita pepo (Zucchini)	carcpeB0395
Carg19584	CsGy3G015580	Cucumber (Gy14) v2	carcgybB0294
Carg19584	MELO3C006770.2	Melon (DHL92) v3.6.1	carmedB0292
Carg19584	CsaV3_3G015710	Cucumber (Chinese Long) v3	carcucB0309
Carg19584	Cla97C05G088700	Watermelon (97103) v2	carwmbB0287
Carg19584	Bhi01G000840	Wax gourd	carwgoB0365

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19584	Cucurbita maxima (Rimu)	carcmaB0391