Cp4.1LG03g12190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPm52 protein
LocationCp4.1LG03 : 10516592 .. 10518449 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAGTTTAAAATATTTTAAAAATATTATTAAAAATTTAATAATATTTTTTTAAAAATTTTTAAAGTTTATTTTTATTAATTTAATATTTAATAAATGAATAGAAAACCCTAATTACGTCTGTGAAATCTGTCGACTTCCATGGAGGGATAAATACCTGAAATTTAGGGTTTTATTGGTGAAACGAATCCGGAGGTTGAAGACAATGGCGAAGTTCAATGTAGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGCTGAAGATCAAGCAACAACCTACTTATGTATCCAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGCCGAGTATGGTTTCTATAAGCTTTGCGCTTGTTTCTGCGTGTGAATTTCTGCTAATATTGCAATTAAAAGCATCTGTGTTGCGGATTGATTTTTTTTTTTTTTTTTTTTTCCTTCGCTTCGTACTAATTACAGGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGTAATGATTTCATACGCTTATTGGTAAAATGAGGATTATCGGGATGCTTTTGCTAATTTCACATGTGAACTGTTCCTTCAATTGTCAATTTCCTGTGGGGTTTTCCTTCCAATGCAACTTGTTGAAGGAGCTGTAGGAGACCTTTGTTGAATATCTTAAGTTCATTTTCCCCTTGAAGTCACTTTAGGAATTCGGTTGGTTTTAAGCGTCGGCCTGGTCCAATAATTTTACGAATGACCAAATGAACAGAGTAAATTTTGGTTAGATTACTGTCCTCAAATTGCTAGAATCATCTAAACATAGATATTCTACACATGTTGTAAGAAGTGATGTTTGAATTTTGTGAGTTTAAAAGTGGGAATCACTTGATAAATAAACTTGGACCATCTGTTTTAGAGTGATTCTGAAATCATTGAAATCACTATTATCCTGCTCAAAATCACTCTAATCATGCTTTGAATCATAGAAAATCAATTTAATGTTTAATTTTACACTTTTAAACCTGATTTTCGTACCATTAAAATTAATCGAATGATCAAAAACATGTTTTAGAGTGATTTTGAACATAAAAAAGTGATCTTAACCATTTCAAAATTACTCACAAATATGCCATCAAAGTCCCTATGACTTGTAGCTACCTTGGCTTTTTTTCTTGCTTGCTTCCTCAATCAATGAAACTTGTTAAGTAAAGGAGCAGCTGTCAAGTTGGGAAGATACACTTCCAATTGCTTTGTGTCAAAGGGAAAAGGATTGGTTTTGTGGTACCTTGATCTTTCAATCTAAGCCAAGTTGGTGATAGGGTTGTGTTGAAGAAGGCAAATATATTTTACTAGGCACTGCTTTTGGAAAAATATACATACATACATACATATATATGTATATATAATAGGAGGGAACCCAAGCACCAAGCCACGAAAGATTGCTTAGAACTCTTCCAATTGGCACATGGATCATTTAAACTATAGTTGCTGAATGGGATATATAGTTTACACGCAATAGCCACAAAAGACAAGTTATCAAAACAATATCAAAATTCTTCTCGATGTTGTTTATGTTCTGTTATCTGTTTCCCAAGATTCCAAAAGAAATCTCAACTACTTGAGGCCATAGAAAGAATATTTTTCCTTGGTGAACGGTTGATCTGTCATGAAAAAAATGTAAAAGGGCCTTTTTATTAGATGGGATAGCCATGAGAAATAGGGAATCTTCTTTCCCATTTTGCAGTTTGCTTGTGATCTTTTACCATGCTTGATTTACTTACAGGACGTTCCTTCACTTCTCATACTGAAATTTAG

mRNA sequence

TTTAAGTTTAAAATATTTTAAAAATATTATTAAAAATTTAATAATATTTTTTTAAAAATTTTTAAAGTTTATTTTTATTAATTTAATATTTAATAAATGAATAGAAAACCCTAATTACGTCTGTGAAATCTGTCGACTTCCATGGAGGGATAAATACCTGAAATTTAGGGTTTTATTGGTGAAACGAATCCGGAGGTTGAAGACAATGGCGAAGTTCAATGTAGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGCTGAAGATCAAGCAACAACCTACTTATGTATCCAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGCCGAGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGACGTTCCTTCACTTCTCATACTGAAATTTAG

Coding sequence (CDS)

ATGGCGAAGTTCAATGTAGTTCAGAAGCAGAGACGAGCTCATATAGCTCAGAGTAAGAGGGCTGCCCATGGTGATCCCTTAACGAAGAAGCTGAAGATCAAGCAACAACCTACTTATGTATCCAGCAAGCGTAAGCGCAAGTTGATGCAGAAGAAACGCCGAGAAGAGAAGGAAGCTTTACGGATGGGTCTGACGAACATGGAAGATGTTGAAATGGCTGTTGCTGAAGGACGTTCCTTCACTTCTCATACTGAAATTTAG

Protein sequence

MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEALRMGLTNMEDVEMAVAEGRSFTSHTEI
Homology
[Close]
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match: A0A0A0L881_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171810 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+KRKRKLM+KKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 61 RMGLTNMEDVEMAVAEGRSFTSHT 85
          +MGLTNMEDVEMAVAE    T+ T
Sbjct: 61 QMGLTNMEDVEMAVAEELKNTNRT 84

[Close]
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match: M0TER5_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNV+QKQRRA +   KRA HGDP T+KLK++  P  VS KRKRKL +K RRE+KEA+
Sbjct: 1  MAKFNVIQKQRRASVQDRKRAVHGDPNTRKLKLRTPPVSVSGKRKRKLFKKWRREQKEAM 60

Query: 61 RMGLTNMEDVEMAVAEGRS 80
            GL  MEDVEMAVAEG S
Sbjct: 61 EKGLVTMEDVEMAVAEGSS 79

[Close]
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match: B9S204_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324660 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQK+RR  I+Q KRA HGDPLT KLK K+QP  VS KR+RKL++K RRE+KEA+
Sbjct: 1  MAKFNVVQKRRREQISQRKRAVHGDPLTGKLKNKKQPLSVSGKRQRKLLKKWRREQKEAI 60

Query: 61 RMGLTNMEDVEMAVAEG 78
            GL  MEDVEMA AEG
Sbjct: 61 EKGLVTMEDVEMAAAEG 77

[Close]
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match: A0A0B2QIW9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037209 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQK+RRA IA+ KR  HGDPLT KLKIK QP  +S KRKRKL +K RR++K+AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 RMGLTNMEDVEMAVAEG 78
          + GL  MEDV+MAVAEG
Sbjct: 61 QNGLVTMEDVQMAVAEG 77

[Close]
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match: I1N5M8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G000800 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQK+RRA IA+ KR  HGDPLT KLKIK QP  +S KRKRKL +K RR++K+AL
Sbjct: 1  MAKFNVVQKKRRALIAEKKRQLHGDPLTGKLKIKDQPLSLSGKRKRKLFKKWRRDQKDAL 60

Query: 61 RMGLTNMEDVEMAVAEG 78
          + GL  MEDV+MAVAEG
Sbjct: 61 QNGLVTMEDVQMAVAEG 77

[Close]
BLAST of Cp4.1LG03g12190 vs. TAIR10
Match: AT1G08580.1 (AT1G08580.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-13
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAK+N + K++R   A  KRA HGDPLT KLK +     VS KR+RKL++K RRE+K+ +
Sbjct: 1  MAKYNEIAKKKREAKADRKRAIHGDPLTNKLKTRTPVPSVSGKRQRKLLRKWRREQKDMV 60

Query: 61 RMGLTNMEDVEMAVAEGRS 80
            GL  MEDVEMA A+  S
Sbjct: 61 EKGLVTMEDVEMASAQAAS 79

[Close]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match: gi|449459818|ref|XP_004147643.1| (PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+KRKRKLM+KKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 61 RMGLTNMEDVEMAVAEGRSFTSHT 85
          +MGLTNMEDVEMAVAE    T+ T
Sbjct: 61 QMGLTNMEDVEMAVAEELKNTNRT 84

[Close]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match: gi|659077099|ref|XP_008439032.1| (PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-26
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+KRKRKLM+KKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 61 RMGLTNMEDVEMAVAEGRSFTSHT 85
          +MGLTNMEDVEMAVAE    T+ T
Sbjct: 61 QMGLTNMEDVEMAVAEELKNTNRT 84

[Close]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match: gi|449459816|ref|XP_004147642.1| (PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+KRKRKLM+KKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAAKAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 61 RMGLTNMEDVEMAVAEGR 79
          +MGLTNMEDVEMAVAE +
Sbjct: 61 QMGLTNMEDVEMAVAEAK 78

[Close]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match: gi|659077101|ref|XP_008439033.1| (PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQKQRRA  AQ KR AHGDPLTKKLKIKQQPTYVS+KRKRKLM+KKRREEKEAL
Sbjct: 1  MAKFNVVQKQRRAVRAQIKRDAHGDPLTKKLKIKQQPTYVSNKRKRKLMKKKRREEKEAL 60

Query: 61 RMGLTNMEDVEMAVAEGR 79
          +MGLTNMEDVEMAVAE +
Sbjct: 61 QMGLTNMEDVEMAVAEAK 78

[Close]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match: gi|1000964576|ref|XP_002520023.2| (PREDICTED: uncharacterized protein LOC8280229 [Ricinus communis])

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-18
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 1  MAKFNVVQKQRRAHIAQSKRAAHGDPLTKKLKIKQQPTYVSSKRKRKLMQKKRREEKEAL 60
          MAKFNVVQK+RR  I+Q KRA HGDPLT KLK K+QP  VS KR+RKL++K RRE+KEA+
Sbjct: 1  MAKFNVVQKRRREQISQRKRAVHGDPLTGKLKNKKQPLSVSGKRQRKLLKKWRREQKEAI 60

Query: 61 RMGLTNMEDVEMAVAEGRSFTSHT 85
            GL  MEDVEMA AEG   +  T
Sbjct: 61 EKGLVTMEDVEMAAAEGEGTSKDT 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g12190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L881_CUCSA3.0e-2684.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171810 PE=4 SV=1[more]
M0TER5_MUSAM1.1e-1767.09Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
B9S204_RICCO1.1e-1770.13Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324660 PE=4 SV=1[more]
A0A0B2QIW9_GLYSO1.5e-1770.13Uncharacterized protein OS=Glycine soja GN=glysoja_037209 PE=4 SV=1[more]
I1N5M8_SOYBN1.5e-1770.13Uncharacterized protein OS=Glycine max GN=GLYMA_19G000800 PE=4 SV=1[more]
BLAST of Cp4.1LG03g12190 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08580.11.5e-1353.16 unknown protein[more]
BLAST of Cp4.1LG03g12190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459818|ref|XP_004147643.1|4.3e-2684.52PREDICTED: uncharacterized protein LOC101207928 isoform X2 [Cucumis sativus][more]
gi|659077099|ref|XP_008439032.1|5.6e-2684.52PREDICTED: uncharacterized protein LOC103483941 isoform X1 [Cucumis melo][more]
gi|449459816|ref|XP_004147642.1|7.4e-2688.46PREDICTED: uncharacterized protein LOC101207928 isoform X1 [Cucumis sativus][more]
gi|659077101|ref|XP_008439033.1|9.6e-2688.46PREDICTED: uncharacterized protein LOC103483941 isoform X2 [Cucumis melo][more]
gi|1000964576|ref|XP_002520023.2|7.4e-1865.48PREDICTED: uncharacterized protein LOC8280229 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12190.1Cp4.1LG03g12190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36709FAMILY NOT NAMEDcoord: 1..82
score: 9.3