CsGy3G005980 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G005980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Protein RRP5
Location	Chr3 : 4994066 .. 4996153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCCAAAAACACAATTCGTCGATCGTCATTCGACTACAGTTGGAAGCACAAACTTCTCGCTGTTTTCGTCTTTAGGGTTTTCGTTGTCAATCACCGCAGCTCTTATCTCTCAGCGATGGCGAAGAACAGGAATAAGAAGCGAAGTGGGGCTGTTTCAATGGACGTAACGGAAAATTCCGTTCAAGAGCTCCCTCAAGGTACACTTTAGTTATTTCAAAGGGAATTATACAGAATAGTATCAGATGGACGCATGTTTGTACTTGACGTTCTTGTTCGTTGTTGCTCTTTCAGATATTACTAGGACTCTTCTTTTTTTAATACTTGTTTTCTTTGAGTAGTTTTGAAGTTTAACTAACTTATTTTCCGCTTGAATCTATAGCGATGGACGTGTCTATGTCTTCAGTTCATAAACCAGCTTCTGGCGCTCTCGATTTGTAAGCTTCTATCTGCAAATTTTGGTTTTTTTTGGGACATGGTTTCACGCCAATTCATTCTGCATTTTTTTTTCGTTTTTTCAATTCATGTGATTTTTTTTATCATTGGCTCTGTTGAATTTTTGTGTGCCGAGAGACTTGAGTAGCTGTTTCTCATGAAGAATTCTTAATCCCAATTTTTTTTTTTCATTTTGGACCGGATGAGGCTTCTAAGTTCTCTGACTAGAGAAAATTGAGCATGTATTAATGATCTTACCACAGAATTTGGTGAATAACACCCAGAAAACTTTTAGTCTCATTCTGCTAACTATTCGTATTTAGCCACATTACTATTGATCTTAATATTTTATTTAGTGGGTCACGTATAACATCATATGCTACATCTTTATAGGCACTTGAGGAGAAGTCATTGCTTGTAAATATATAATAGATAAAGAACTTAGAAGATATACTAAGTCTTTTGAGGTACTTCTACTTGGACCCTCGCACCCTCCCTCTTTAGATACCAATCTAATCCTAATTCACTTAGCAAATGCCTACTTTCTCCTTTTCCACTCCCTCCATTTATAACCAAATACCCTCAAGTCTTAACAACTTCCTTAACCAATTGATAATTACTAATATATCCCCTAATGTCCCTAATAACATTCCTGTCAATTTAATTTCCCACAAATGTGTGAAGCATCTGATTCATGCACGCACCCCTCTGATTCGTTTCTAGCCACTTGAACTTATCAGCAAAGACGGCAAATCAATAATTGAAGGAGTGCCAGAGCTTTCCTACCACCGTAGCCCTTGATATTTTATCGTTCCTGCATTAGTAGCATGTAAAATGATACTATTGGTTTCAATTATATTGAAGGCACACGTATATTTAAAGTGGTATGCTCTACAATGTTCAACTTTTAATGCCTTAAGGATTATGATTGAAACCCACCCATGTTTTCCAAACAGTACTAGGATTTTAAGGGCACATTAGTAATTAGCTAGAGTGTTTGTTATACTTCTTGTTAATAAATATACTTCTTTGGGTTTGATTCTCTCTTATCTATATCTTATAGTGTGTTTGGATTGACTTTTTAAGTGTTTATAAACATTTTTTTTTAGACACTTGGAAACAATCCAAACATGCACTTAGTTTTAGCTGGTTTTCTCAATTTGGTTCGTGTTAAAAATTAAAGCTGCCATTTTCCTTGATCTTTACTCGTTGTTGTGACAGAAAGTTGAAAAAGGGAAGGCCAATGAAGCGAACAAAGAATGTTAGGAAGACAAAAGCCATCGCGAAGGCCATTTCTAAGAGCGAGCAATCAATGGAGAAAATTTTGAAAAATCATAGCAAAACTACGAGAATACAATCTGCAAAAACATTGTATGAATGATAGCATCATTTTATAGAAAATTTCCCTTGAAAATTGTAAAATTTATTTATTTTTGTTCTGCTCATAGGTTCTTATTACACTCTCTACCCACTCACCATTTAGTTTTCAATTGTATCAATCTAATCTGGCATTTATTTATTTTAGAGAATGGATTGACATTTTTGTCTATGCTCACTAGCCACTAACAAAATGCTATATTTGCCAATTTGATTGCCATGGATCAATATATATGGAGATATCAGACATTAATTTATTAAATTTTTTATCAAAAAC

mRNA sequence

CAGCCCAAAAACACAATTCGTCGATCGTCATTCGACTACAGTTGGAAGCACAAACTTCTCGCTGTTTTCGTCTTTAGGGTTTTCGTTGTCAATCACCGCAGCTCTTATCTCTCAGCGATGGCGAAGAACAGGAATAAGAAGCGAAGTGGGGCTGTTTCAATGGACGTAACGGAAAATTCCGTTCAAGAGCTCCCTCAAGCGATGGACGTGTCTATGTCTTCAGTTCATAAACCAGCTTCTGGCGCTCTCGATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGAACAAAGAATGTTAGGAAGACAAAAGCCATCGCGAAGGCCATTTCTAAGAGCGAGCAATCAATGGAGAAAATTTTGAAAAATCATAGCAAAACTACGAGAATACAATCTGCAAAAACATTGTATGAATGATAGCATCATTTTATAGAAAATTTCCCTTGAAAATTGTAAAATTTATTTATTTTTGTTCTGCTCATAGGTTCTTATTACACTCTCTACCCACTCACCATTTAGTTTTCAATTGTATCAATCTAATCTGGCATTTATTTATTTTAGAGAATGGATTGACATTTTTGTCTATGCTCACTAGCCACTAACAAAATGCTATATTTGCCAATTTGATTGCCATGGATCAATATATATGGAGATATCAGACATTAATTTATTAAATTTTTTATCAAAAAC

Coding sequence (CDS)

CAGCCCAAAAACACAATTCGTCGATCGTCATTCGACTACAGTTGGAAGCACAAACTTCTCGCTGTTTTCGTCTTTAGGGTTTTCGTTGTCAATCACCGCAGCTCTTATCTCTCAGCGATGGCGAAGAACAGGAATAAGAAGCGAAGTGGGGCTGTTTCAATGGACGTAACGGAAAATTCCGTTCAAGAGCTCCCTCAAGCGATGGACGTGTCTATGTCTTCAGTTCATAAACCAGCTTCTGGCGCTCTCGATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGAACAAAGAATGTTAGGAAGACAAAAGCCATCGCGAAGGCCATTTCTAAGAGCGAGCAATCAATGGAGAAAATTTTGAAAAATCATAGCAAAACTACGAGAATACAATCTGCAAAAACATTGTATGAATGA

Protein sequence

QPKNTIRRSSFDYSWKHKLLAVFVFRVFVVNHRSSYLSAMAKNRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE

Homology

[Close]

BLAST of CsGy3G005980 vs. NCBI nr
Match: XP_004149295.1 (PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 40  MAKNRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNV 99
           MAKNRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNV
Sbjct: 1   MAKNRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNV 60

Query: 100 RKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           RKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE
Sbjct: 61  RKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 98

[Close]

BLAST of CsGy3G005980 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 9.9e-37
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 40  MAKNRN-KKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKN 99
           MAKNRN KKR GAVSMDVTENSV ELPQAMDVS S+VHKPASGALDLKLKKGRPMKR+KN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 100 VRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           VRKTKAIAKAISKSEQSMEKILKN SKTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of CsGy3G005980 vs. NCBI nr
Match: XP_023538255.1 (uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 3.6e-31
Identity = 84/101 (83.17%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 40  MAKNRNKKR--SGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKK-GRPMKRT 99
           MAKNRNKK+  SGA+SMD+TENSV ELPQAMDVS S+VHKPASGAL+LKLKK GR MKR+
Sbjct: 1   MAKNRNKKKKGSGAISMDITENSVHELPQAMDVSESAVHKPASGALNLKLKKGGRLMKRS 60

Query: 100 KNVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           KNVRKTKA+AKAISKSEQS EKILKN  KTTRI SAKTLYE
Sbjct: 61  KNVRKTKAMAKAISKSEQSAEKILKNQGKTTRIHSAKTLYE 101

[Close]

BLAST of CsGy3G005980 vs. NCBI nr
Match: KGN56208.1 (hypothetical protein Csa_3G099690 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-26
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 68  MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT 127
           MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT
Sbjct: 1   MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT 60

Query: 128 RIQSAKTLYE 138
           RIQSAKTLYE
Sbjct: 61  RIQSAKTLYE 70

[Close]

BLAST of CsGy3G005980 vs. NCBI nr
Match: XP_022142748.1 (uncharacterized protein LOC111012789 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 54  MDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSE 113
           MD+TEN+V +LPQAMDVS S VHKP SG L+LKL+KGRPMKR++NVRKTKA+AKAI KSE
Sbjct: 1   MDLTENTVVDLPQAMDVSESGVHKPVSGGLNLKLRKGRPMKRSQNVRKTKAMAKAICKSE 60

Query: 114 QSMEKILKNHSKTTRIQSAKTL 136
           QS EKI+KN SKTTRIQSAKTL
Sbjct: 61  QSAEKIMKNQSKTTRIQSAKTL 82

[Close]

BLAST of CsGy3G005980 vs. TrEMBL
Match: tr|A0A1S3BUB2|A0A1S3BUB2_CUCME (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.5e-37
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 40  MAKNRN-KKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKN 99
           MAKNRN KKR GAVSMDVTENSV ELPQAMDVS S+VHKPASGALDLKLKKGRPMKR+KN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 100 VRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           VRKTKAIAKAISKSEQSMEKILKN SKTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of CsGy3G005980 vs. TrEMBL
Match: tr|A0A0A0L355|A0A0A0L355_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099690 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 68  MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT 127
           MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT
Sbjct: 1   MDVSMSSVHKPASGALDLKLKKGRPMKRTKNVRKTKAIAKAISKSEQSMEKILKNHSKTT 60

Query: 128 RIQSAKTLYE 138
           RIQSAKTLYE
Sbjct: 61  RIQSAKTLYE 70

[Close]

BLAST of CsGy3G005980 vs. TrEMBL
Match: tr|A0A2P5B725|A0A2P5B725_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_265580 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.5e-22
Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 40  MAKNRNKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLKKGRPMKRTKNV 99
           MAKNRNKK+  + +MD+TEN V +LPQAMD S +    P +GA  +K+KKGRPMKR+KNV
Sbjct: 1   MAKNRNKKKRDSSAMDITENFVSDLPQAMDTSETGARNPDAGAPSMKVKKGRPMKRSKNV 60

Query: 100 RKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           RK K+IAKAISKSE++++K+LK+ +K +R QSAK LYE
Sbjct: 61  RKMKSIAKAISKSEKAVQKVLKHENKKSRTQSAKLLYE 98

[Close]

BLAST of CsGy3G005980 vs. TrEMBL
Match: tr|A0A0L9ULU8|A0A0L9ULU8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g128100 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 40  MAKNR-NKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLK-KGRPMKRTK 99
           MAKNR NKKR+G VSMD T+ SV E PQAMD S S V    SGA ++K+K KGRPMKR+K
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 100 NVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           NVRK KAIAKA+S +E+S+EK+ KN +K +R++SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

[Close]

BLAST of CsGy3G005980 vs. TrEMBL
Match: tr|A0A0S3SI95|A0A0S3SI95_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G123700 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 40  MAKNR-NKKRSGAVSMDVTENSVQELPQAMDVSMSSVHKPASGALDLKLK-KGRPMKRTK 99
           MAKNR NKKR+G VSMD T+ SV E PQAMD S S V    SGA ++K+K KGRPMKR+K
Sbjct: 1   MAKNRNNKKRNGVVSMDTTDASVSEQPQAMDTSESRVQNAVSGATNMKMKQKGRPMKRSK 60

Query: 100 NVRKTKAIAKAISKSEQSMEKILKNHSKTTRIQSAKTLYE 138
           NVRK KAIAKA+S +E+S+EK+ KN +K +R++SAK+LYE
Sbjct: 61  NVRKMKAIAKAVSSNEKSIEKVSKNENKRSRVKSAKSLYE 100

The following BLAST results are available for this feature:

BLAST of CsGy3G005980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149295.1	1.3e-41	100.00	PREDICTED: uncharacterized protein LOC101207037 [Cucumis sativus]	[more]
XP_008452291.1	9.9e-37	92.93	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
XP_023538255.1	3.6e-31	83.17	uncharacterized protein LOC111799087 [Cucurbita pepo subsp. pepo]	[more]
KGN56208.1	2.1e-26	100.00	hypothetical protein Csa_3G099690 [Cucumis sativus]	[more]
XP_022142748.1	5.6e-24	79.27	uncharacterized protein LOC111012789 [Momordica charantia]	[more]

BLAST of CsGy3G005980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G005980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G005980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUB2\|A0A1S3BUB2_CUCME	6.5e-37	92.93	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
tr\|A0A0A0L355\|A0A0A0L355_CUCSA	1.4e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099690 PE=4 SV=1	[more]
tr\|A0A2P5B725\|A0A2P5B725_PARAD	3.5e-22	61.22	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_265580 PE...	[more]
tr\|A0A0L9ULU8\|A0A0L9ULU8_PHAAN	2.3e-21	64.00	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g128100 PE...	[more]
tr\|A0A0S3SI95\|A0A0S3SI95_PHAAN	2.3e-21	64.00	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G005980.1	CsGy3G005980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36385	FAMILY NOT NAMED	coord: 40..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G005980	Csa3G099690	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G005980	MELO3C016554	Melon (DHL92) v3.5.1	cgybmeB211
CsGy3G005980	ClCG10G006500	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G005980	CSPI03G05860	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G005980	CmaCh04G009170	Cucurbita maxima (Rimu)	cgybcmaB416
CsGy3G005980	CmaCh16G008070	Cucurbita maxima (Rimu)	cgybcmaB341
CsGy3G005980	CmoCh04G009850	Cucurbita moschata (Rifu)	cgybcmoB393
CsGy3G005980	Lsi05G006870	Bottle gourd (USVL1VR-Ls)	cgyblsiB183
CsGy3G005980	Cp4.1LG14g00160	Cucurbita pepo (Zucchini)	cgybcpeB328
CsGy3G005980	MELO3C016554.2	Melon (DHL92) v3.6.1	cgybmedB203
CsGy3G005980	CsaV3_3G005960	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G005980	Cla97C10G190450	Watermelon (97103) v2	cgybwmbB174
CsGy3G005980	Carg24075	Silver-seed gourd	carcgybB0233
CsGy3G005980	Carg00035	Silver-seed gourd	carcgybB0659

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G005980	Cucumber (Gy14) v2	cgybcgybB016
CsGy3G005980	Cucurbita moschata (Rifu)	cgybcmoB313
CsGy3G005980	Cucurbita pepo (Zucchini)	cgybcpeB369
CsGy3G005980	Cucumber (Chinese Long) v2	cgybcuB095
CsGy3G005980	Bottle gourd (USVL1VR-Ls)	cgyblsiB163
CsGy3G005980	Melon (DHL92) v3.5.1	cgybmeB156
CsGy3G005980	Watermelon (Charleston Gray)	cgybwcgB200
CsGy3G005980	Watermelon (97103) v1	cgybwmB201
CsGy3G005980	Watermelon (97103) v1	cgybwmB211
CsGy3G005980	Wild cucumber (PI 183967)	cgybcpiB096
CsGy3G005980	Cucumber (Chinese Long) v3	cgybcucB104
CsGy3G005980	Watermelon (97103) v2	cgybwmbB192
CsGy3G005980	Wax gourd	cgybwgoB209